Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF3030

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
106,831	+		GFF3029	0.19	+0.6
106,831	+		GFF3029	0.19	-0.7
106,831	+		GFF3029	0.19	+0.1
106,831	+		GFF3029	0.19	+0.4
106,832	-		GFF3029	0.19	+0.3
106,832	-		GFF3029	0.19	+1.4
106,832	-		GFF3029	0.19	-0.4
106,832	-		GFF3029	0.19	+0.1
106,832	-		GFF3029	0.19	+0.5
106,861	+		GFF3029	0.22	+0.3
106,961	-		GFF3029	0.32	+0.6
107,005	+		GFF3029	0.37	-0.3
107,005	+		GFF3029	0.37	-0.8
107,185	+		GFF3029	0.55	+0.4
107,185	+		GFF3029	0.55	+0.3
107,186	-		GFF3029	0.55	-0.4
107,186	-		GFF3029	0.55	+0.1
107,186	-		GFF3029	0.55	-0.8
107,186	-		GFF3029	0.55	+1.2
107,410	+		GFF3029	0.78	-0.2
107,411	-		GFF3029	0.78	+0.8
107,441	-		GFF3029	0.81	-0.2
107,554	+				-0.1
107,718	-		GFF3030	0.20	+0.2
108,071	+				-0.1
108,072	-				-0.1
108,072	-				+1.3
108,285	+		GFF3031	0.14	-0.4
108,286	-		GFF3031	0.14	+0.1
108,286	-		GFF3031	0.14	+0.6
108,301	-		GFF3031	0.15	-0.6
108,301	-		GFF3031	0.15	+0.3
108,375	+		GFF3031	0.20	-0.7
108,523	-		GFF3031	0.29	-0.5
108,918	+		GFF3031	0.55	-0.5
108,918	+		GFF3031	0.55	-0.5
108,918	+		GFF3031	0.55	+0.3
108,919	-		GFF3031	0.56	-0.4
108,919	-		GFF3031	0.56	-0.6
108,919	-		GFF3031	0.56	-0.7
108,919	-		GFF3031	0.56	+0.1
108,919	-		GFF3031	0.56	-1.4