Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2826 and GFF2827 are separated by 7 nucleotides GFF2827 and GFF2828 are separated by 180 nucleotides GFF2828 and GFF2829 are separated by 18 nucleotides
GFF2826 - Preprotein translocase secY subunit (TC 3.A.5.1.1), at 420,079 to 421,392
GFF2826
GFF2827 - Translation initiation factor 1, at 421,400 to 421,618
GFF2827
GFF2828 - SSU ribosomal protein S13p (S18e), at 421,799 to 422,164
GFF2828
GFF2829 - SSU ribosomal protein S11p (S14e), at 422,183 to 422,587
GFF2829
Position (kb) 421
422 Strain fitness (log2 ratio) -1
0
1 at 421.399 kb on + strand at 421.399 kb on + strand at 421.399 kb on + strand at 421.399 kb on + strand at 421.399 kb on + strand at 421.529 kb on + strand, within GFF2827 at 421.529 kb on + strand, within GFF2827 at 421.529 kb on + strand, within GFF2827 at 421.529 kb on + strand, within GFF2827 at 421.529 kb on + strand, within GFF2827 at 421.529 kb on + strand, within GFF2827 at 421.529 kb on + strand, within GFF2827 at 421.529 kb on + strand, within GFF2827 at 421.529 kb on + strand, within GFF2827 at 421.529 kb on + strand, within GFF2827 at 421.529 kb on + strand, within GFF2827 at 421.563 kb on + strand, within GFF2827 at 421.563 kb on + strand, within GFF2827 at 421.563 kb on + strand, within GFF2827 at 421.646 kb on + strand at 422.610 kb on + strand at 422.610 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1 remove 421,399 + -0.4 421,399 + -0.8 421,399 + -0.1 421,399 + -0.0 421,399 + -0.1 421,529 + GFF2827 0.59 -0.8 421,529 + GFF2827 0.59 -0.2 421,529 + GFF2827 0.59 -0.9 421,529 + GFF2827 0.59 +0.9 421,529 + GFF2827 0.59 -0.3 421,529 + GFF2827 0.59 -0.3 421,529 + GFF2827 0.59 +0.4 421,529 + GFF2827 0.59 +0.0 421,529 + GFF2827 0.59 -0.8 421,529 + GFF2827 0.59 +0.6 421,529 + GFF2827 0.59 +0.3 421,563 + GFF2827 0.74 -0.1 421,563 + GFF2827 0.74 -1.0 421,563 + GFF2827 0.74 -0.6 421,646 + -1.0 422,610 + -0.4 422,610 + +0.2
Or see this region's nucleotide sequence