Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2738 and GFF2739 are separated by 17 nucleotides GFF2739 and GFF2740 are separated by 108 nucleotides GFF2740 and GFF2741 are separated by 48 nucleotides GFF2741 and GFF2742 are separated by 150 nucleotides
GFF2738 - Omega-amino acid--pyruvate aminotransferase (EC 2.6.1.18), at 334,400 to 335,740
GFF2738
GFF2739 - lipoprotein, putative, at 335,758 to 336,564
GFF2739
GFF2740 - Ammonia monooxygenase, at 336,673 to 337,695
GFF2740
GFF2741 - FIG00932573: hypothetical protein, at 337,744 to 338,028
GFF2741
GFF2742 - VgrG protein, at 338,179 to 339,306
GFF2742
Position (kb) 336
337
338 Strain fitness (log2 ratio) -1
0
1
2 at 335.738 kb on + strand at 335.739 kb on - strand at 335.739 kb on - strand at 336.233 kb on + strand, within GFF2739 at 336.234 kb on - strand, within GFF2739 at 336.572 kb on + strand at 336.575 kb on + strand at 336.576 kb on - strand at 336.576 kb on - strand at 336.576 kb on - strand at 336.576 kb on - strand at 336.844 kb on + strand, within GFF2740 at 336.844 kb on + strand, within GFF2740 at 336.844 kb on + strand, within GFF2740 at 336.844 kb on + strand, within GFF2740 at 336.845 kb on - strand, within GFF2740 at 337.009 kb on + strand, within GFF2740 at 337.009 kb on + strand, within GFF2740 at 337.009 kb on + strand, within GFF2740 at 337.010 kb on - strand, within GFF2740 at 337.010 kb on - strand, within GFF2740 at 337.010 kb on - strand, within GFF2740 at 337.782 kb on - strand, within GFF2741 at 337.782 kb on - strand, within GFF2741 at 337.880 kb on + strand, within GFF2741 at 337.880 kb on + strand, within GFF2741 at 337.880 kb on + strand, within GFF2741 at 337.881 kb on - strand, within GFF2741 at 337.881 kb on - strand, within GFF2741 at 338.015 kb on + strand at 338.016 kb on - strand at 338.016 kb on - strand at 338.046 kb on - strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.072 kb on + strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.073 kb on - strand at 338.074 kb on + strand at 338.074 kb on + strand at 338.074 kb on + strand at 338.074 kb on + strand at 338.075 kb on - strand at 338.084 kb on + strand at 338.085 kb on - strand at 338.085 kb on - strand at 338.085 kb on - strand at 338.085 kb on - strand at 338.085 kb on - strand at 338.096 kb on + strand at 338.096 kb on + strand at 338.096 kb on + strand at 338.096 kb on + strand at 338.096 kb on + strand at 338.097 kb on - strand at 338.097 kb on - strand at 338.097 kb on - strand at 338.097 kb on - strand at 338.098 kb on + strand at 338.098 kb on + strand at 338.099 kb on - strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.115 kb on + strand at 338.116 kb on - strand at 338.116 kb on - strand at 338.180 kb on + strand at 338.180 kb on + strand at 338.441 kb on + strand, within GFF2742 at 338.441 kb on + strand, within GFF2742 at 338.441 kb on - strand, within GFF2742 at 338.442 kb on - strand, within GFF2742
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1 remove 335,738 + +0.4 335,739 - -0.5 335,739 - -0.4 336,233 + GFF2739 0.59 +0.6 336,234 - GFF2739 0.59 -0.2 336,572 + +1.2 336,575 + -0.5 336,576 - +0.4 336,576 - -0.5 336,576 - -1.1 336,576 - -0.6 336,844 + GFF2740 0.17 -0.3 336,844 + GFF2740 0.17 -0.4 336,844 + GFF2740 0.17 +0.4 336,844 + GFF2740 0.17 -0.1 336,845 - GFF2740 0.17 +0.4 337,009 + GFF2740 0.33 +0.4 337,009 + GFF2740 0.33 -0.3 337,009 + GFF2740 0.33 +0.0 337,010 - GFF2740 0.33 +0.6 337,010 - GFF2740 0.33 -0.4 337,010 - GFF2740 0.33 +0.3 337,782 - GFF2741 0.13 +0.1 337,782 - GFF2741 0.13 +0.1 337,880 + GFF2741 0.48 -0.5 337,880 + GFF2741 0.48 +0.0 337,880 + GFF2741 0.48 +0.2 337,881 - GFF2741 0.48 +0.1 337,881 - GFF2741 0.48 +0.6 338,015 + -0.2 338,016 - -0.2 338,016 - +1.0 338,046 - +0.0 338,072 + -0.0 338,072 + +0.7 338,072 + -0.3 338,072 + -0.5 338,072 + +0.2 338,072 + +0.1 338,072 + +2.6 338,072 + +0.1 338,072 + -0.7 338,072 + -0.7 338,072 + +0.6 338,072 + -0.0 338,072 + -0.1 338,072 + +0.6 338,072 + -0.0 338,072 + -1.0 338,072 + +0.0 338,072 + +0.6 338,072 + +0.6 338,072 + -0.2 338,073 - -0.4 338,073 - -0.8 338,073 - +0.0 338,073 - -1.0 338,073 - +1.9 338,073 - -0.5 338,073 - -0.1 338,073 - -0.2 338,073 - -0.2 338,073 - +0.1 338,073 - +1.6 338,073 - +0.5 338,073 - -0.8 338,073 - +0.8 338,073 - -0.4 338,073 - +0.6 338,073 - -1.2 338,073 - -0.2 338,073 - +0.0 338,073 - -0.2 338,073 - +0.1 338,074 + +0.2 338,074 + -0.1 338,074 + +0.1 338,074 + -0.1 338,075 - +0.1 338,084 + +0.8 338,085 - -0.7 338,085 - -0.3 338,085 - +0.5 338,085 - -0.4 338,085 - -0.3 338,096 + +0.1 338,096 + +0.2 338,096 + +0.4 338,096 + +0.2 338,096 + +0.2 338,097 - +0.6 338,097 - +0.3 338,097 - -0.8 338,097 - +0.2 338,098 + +1.3 338,098 + +0.2 338,099 - +0.0 338,115 + +0.4 338,115 + +0.6 338,115 + +0.6 338,116 - +0.1 338,116 - -0.1 338,180 + +0.0 338,180 + -1.5 338,441 + GFF2742 0.23 +0.0 338,441 + GFF2742 0.23 -0.5 338,441 - GFF2742 0.23 +0.4 338,442 - GFF2742 0.23 -0.1
Or see this region's nucleotide sequence