Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2483

Experiment: Ying_Others16 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2482 and GFF2483 overlap by 4 nucleotidesGFF2483 and GFF2484 are separated by 181 nucleotides GFF2482 - Iron-regulated protein A precursor, at 64,598 to 65,692 GFF2482 GFF2483 - Probable thiol oxidoreductase with 2 cytochrome c heme-binding sites, at 65,689 to 67,143 GFF2483 GFF2484 - Iron-regulated protein A precursor, at 67,325 to 68,509 GFF2484 Position (kb) 65 66 67 68Strain fitness (log2 ratio) -2 -1 0 1 2at 65.178 kb on + strand, within GFF2482at 65.179 kb on - strand, within GFF2482at 65.551 kb on - strand, within GFF2482at 65.580 kb on + strand, within GFF2482at 65.581 kb on - strand, within GFF2482at 65.581 kb on - strand, within GFF2482at 65.581 kb on - strand, within GFF2482at 65.581 kb on - strand, within GFF2482at 65.583 kb on + strandat 65.584 kb on - strandat 65.584 kb on - strandat 65.666 kb on + strandat 65.667 kb on - strandat 65.667 kb on - strandat 65.692 kb on + strandat 65.693 kb on - strandat 65.966 kb on + strand, within GFF2483at 65.966 kb on + strand, within GFF2483at 65.967 kb on - strand, within GFF2483at 65.967 kb on - strand, within GFF2483at 66.035 kb on + strand, within GFF2483at 66.035 kb on + strand, within GFF2483at 66.035 kb on + strand, within GFF2483at 66.036 kb on - strand, within GFF2483at 66.036 kb on - strand, within GFF2483at 66.146 kb on + strand, within GFF2483at 66.147 kb on - strand, within GFF2483at 66.581 kb on + strand, within GFF2483at 66.582 kb on - strand, within GFF2483at 66.602 kb on + strand, within GFF2483at 66.602 kb on + strand, within GFF2483at 66.603 kb on - strand, within GFF2483at 66.623 kb on + strand, within GFF2483at 66.623 kb on + strand, within GFF2483at 66.966 kb on - strand, within GFF2483at 67.047 kb on - strandat 67.602 kb on + strand, within GFF2484at 67.602 kb on + strand, within GFF2484at 67.602 kb on + strand, within GFF2484at 67.602 kb on + strand, within GFF2484at 67.603 kb on - strand, within GFF2484at 67.603 kb on - strand, within GFF2484at 67.603 kb on - strand, within GFF2484at 67.816 kb on - strand, within GFF2484at 67.816 kb on - strand, within GFF2484at 67.816 kb on - strand, within GFF2484at 67.816 kb on - strand, within GFF2484at 67.935 kb on + strand, within GFF2484at 67.935 kb on + strand, within GFF2484at 67.936 kb on - strand, within GFF2484at 67.936 kb on - strand, within GFF2484at 67.936 kb on - strand, within GFF2484at 67.936 kb on - strand, within GFF2484at 67.936 kb on - strand, within GFF2484at 67.936 kb on - strand, within GFF2484at 68.124 kb on + strand, within GFF2484at 68.124 kb on + strand, within GFF2484at 68.124 kb on + strand, within GFF2484at 68.124 kb on + strand, within GFF2484at 68.124 kb on + strand, within GFF2484at 68.124 kb on + strand, within GFF2484at 68.124 kb on + strand, within GFF2484at 68.133 kb on + strand, within GFF2484at 68.133 kb on + strand, within GFF2484at 68.133 kb on + strand, within GFF2484at 68.134 kb on - strand, within GFF2484at 68.134 kb on - strand, within GFF2484at 68.134 kb on - strand, within GFF2484at 68.134 kb on - strand, within GFF2484at 68.134 kb on - strand, within GFF2484

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1
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65,178 + GFF2482 0.53 -0.4
65,179 - GFF2482 0.53 -1.2
65,551 - GFF2482 0.87 -0.4
65,580 + GFF2482 0.90 +0.2
65,581 - GFF2482 0.90 +0.0
65,581 - GFF2482 0.90 -0.2
65,581 - GFF2482 0.90 -1.8
65,581 - GFF2482 0.90 +0.0
65,583 + -1.0
65,584 - -0.4
65,584 - -0.1
65,666 + +0.1
65,667 - +0.5
65,667 - -0.7
65,692 + +0.1
65,693 - +0.0
65,966 + GFF2483 0.19 -0.4
65,966 + GFF2483 0.19 +0.8
65,967 - GFF2483 0.19 -0.1
65,967 - GFF2483 0.19 -1.4
66,035 + GFF2483 0.24 +1.9
66,035 + GFF2483 0.24 +0.7
66,035 + GFF2483 0.24 +0.1
66,036 - GFF2483 0.24 +0.2
66,036 - GFF2483 0.24 +0.7
66,146 + GFF2483 0.31 +0.6
66,147 - GFF2483 0.31 +0.3
66,581 + GFF2483 0.61 +0.7
66,582 - GFF2483 0.61 +1.3
66,602 + GFF2483 0.63 -1.0
66,602 + GFF2483 0.63 +0.4
66,603 - GFF2483 0.63 -0.3
66,623 + GFF2483 0.64 +0.3
66,623 + GFF2483 0.64 -0.8
66,966 - GFF2483 0.88 -0.0
67,047 - -0.0
67,602 + GFF2484 0.23 -0.4
67,602 + GFF2484 0.23 -0.2
67,602 + GFF2484 0.23 +2.0
67,602 + GFF2484 0.23 -0.2
67,603 - GFF2484 0.23 +0.6
67,603 - GFF2484 0.23 -0.0
67,603 - GFF2484 0.23 -0.1
67,816 - GFF2484 0.41 +1.6
67,816 - GFF2484 0.41 -0.1
67,816 - GFF2484 0.41 -0.7
67,816 - GFF2484 0.41 +0.5
67,935 + GFF2484 0.51 +0.3
67,935 + GFF2484 0.51 -0.4
67,936 - GFF2484 0.52 -0.1
67,936 - GFF2484 0.52 -0.1
67,936 - GFF2484 0.52 -0.4
67,936 - GFF2484 0.52 -0.4
67,936 - GFF2484 0.52 -0.2
67,936 - GFF2484 0.52 -0.3
68,124 + GFF2484 0.67 -0.4
68,124 + GFF2484 0.67 -0.4
68,124 + GFF2484 0.67 -0.1
68,124 + GFF2484 0.67 +0.9
68,124 + GFF2484 0.67 -0.3
68,124 + GFF2484 0.67 -0.3
68,124 + GFF2484 0.67 +0.2
68,133 + GFF2484 0.68 -0.1
68,133 + GFF2484 0.68 +0.3
68,133 + GFF2484 0.68 -0.0
68,134 - GFF2484 0.68 +0.0
68,134 - GFF2484 0.68 +0.2
68,134 - GFF2484 0.68 +0.3
68,134 - GFF2484 0.68 +0.9
68,134 - GFF2484 0.68 -0.0

Or see this region's nucleotide sequence