Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2370

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
9,898	+		GFF2369	0.54	-1.4
9,899	-		GFF2369	0.54	+0.7
9,899	-		GFF2369	0.54	-0.0
9,899	-		GFF2369	0.54	-0.7
9,899	-		GFF2369	0.54	+0.1
10,015	+		GFF2369	0.61	+0.2
10,016	-		GFF2369	0.61	+0.5
10,016	-		GFF2369	0.61	+0.1
10,016	-		GFF2369	0.61	-0.0
10,054	-		GFF2369	0.64	+0.1
10,216	+		GFF2369	0.75	-0.4
10,216	+		GFF2369	0.75	-0.0
10,217	-		GFF2369	0.75	+0.1
10,217	-		GFF2369	0.75	-0.3
10,273	+		GFF2369	0.79	-1.3
10,273	+		GFF2369	0.79	-0.4
10,273	+		GFF2369	0.79	+0.2
10,274	-		GFF2369	0.79	-0.9
10,274	-		GFF2369	0.79	-0.1
10,513	+				+0.2
10,514	-				+0.1
10,893	+		GFF2370	0.25	-0.3
11,007	+		GFF2370	0.41	-0.3
11,229	+		GFF2370	0.72	-0.6
11,230	-		GFF2370	0.72	-1.4
11,230	-		GFF2370	0.72	-0.9
11,275	-		GFF2370	0.79	+0.5
11,326	+		GFF2370	0.86	-0.2
11,326	+		GFF2370	0.86	-0.2
11,327	-		GFF2370	0.86	+0.2
11,327	-		GFF2370	0.86	-0.0
11,327	-		GFF2370	0.86	-0.3
11,327	-		GFF2370	0.86	-0.1
11,502	-				+0.1
11,944	+				-0.1
11,944	+				-0.1
11,944	+				-0.8
11,945	-				+0.1
11,945	-				-0.4
12,169	-		GFF2372	0.18	-0.1
12,300	+		GFF2372	0.30	-1.9
12,300	+		GFF2372	0.30	-0.4
12,300	+		GFF2372	0.30	-0.2
12,300	+		GFF2372	0.30	+0.7
12,301	-		GFF2372	0.30	+0.2
12,301	-		GFF2372	0.30	-0.2
12,301	-		GFF2372	0.30	-1.1