Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF2239

Experiment: Ying_Others16 rep A; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Others16 rep A; time point 1
1,122,978	+		GFF2238	0.14	-0.5
1,122,979	-		GFF2238	0.14	-0.3
1,122,996	+		GFF2238	0.16	+0.8
1,122,996	+		GFF2238	0.16	+0.0
1,122,996	+		GFF2238	0.16	+0.5
1,122,996	+		GFF2238	0.16	+0.0
1,122,996	+		GFF2238	0.16	+0.6
1,122,997	-		GFF2238	0.16	-0.6
1,122,997	-		GFF2238	0.16	-0.3
1,122,997	-		GFF2238	0.16	-1.1
1,123,005	+		GFF2238	0.17	-0.1
1,123,005	+		GFF2238	0.17	-0.6
1,123,005	+		GFF2238	0.17	+0.3
1,123,005	+		GFF2238	0.17	+0.5
1,123,005	+		GFF2238	0.17	-0.1
1,123,006	-		GFF2238	0.17	-0.2
1,123,006	-		GFF2238	0.17	-0.1
1,123,053	+		GFF2238	0.23	+0.2
1,123,054	-		GFF2238	0.23	-0.1
1,123,146	+		GFF2238	0.35	-0.5
1,123,147	-		GFF2238	0.35	-0.2
1,123,320	+		GFF2238	0.57	-0.6
1,123,320	+		GFF2238	0.57	-0.3
1,123,321	-		GFF2238	0.58	-0.9
1,123,321	-		GFF2238	0.58	-0.6
1,123,321	-		GFF2238	0.58	-0.7
1,123,321	-		GFF2238	0.58	+0.5
1,123,470	+		GFF2238	0.77	-0.9
1,123,471	-		GFF2238	0.77	+0.1
1,123,594	-				-0.5
1,123,761	+				+0.7
1,123,783	-				+0.9
1,123,783	-				+0.9
1,123,835	+				+1.6
1,123,835	+				-0.4
1,123,836	-				+1.1
1,123,936	+				+0.1
1,123,936	+				-0.5
1,123,936	+				-0.6
1,123,936	+				+0.3
1,123,936	+				+0.1
1,123,968	+				+0.6
1,124,224	+		GFF2239	0.47	+0.4
1,124,224	+		GFF2239	0.47	-0.7
1,124,225	-		GFF2239	0.47	+0.1
1,124,338	+		GFF2239	0.68	+0.3
1,124,338	+		GFF2239	0.68	-0.2
1,124,339	-		GFF2239	0.68	+0.1
1,125,096	+		GFF2240	0.70	+0.3
1,125,097	-		GFF2240	0.70	+0.5
1,125,097	-		GFF2240	0.70	+0.3
1,125,358	+				-0.7
1,125,359	-				+0.8
1,125,359	-				-0.2
1,125,359	-				-0.3
1,125,359	-				+0.6