Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2038 and GFF2039 are separated by 21 nucleotides GFF2039 and GFF2040 are separated by 27 nucleotides GFF2040 and GFF2041 overlap by 4 nucleotides GFF2041 and GFF2042 are separated by 172 nucleotides GFF2042 and GFF2043 overlap by 28 nucleotides
GFF2038 - Gamma-glutamyl-GABA hydrolase (EC 3.5.1.94), at 919,690 to 920,499
GFF2038
GFF2039 - hypothetical protein, at 920,521 to 920,685
GFF2039
GFF2040 - Transcriptional regulator, GntR family domain / Aspartate aminotransferase (EC 2.6.1.1), at 920,713 to 922,212
GFF2040
GFF2041 - hypothetical protein, at 922,209 to 922,700
GFF2041
GFF2042 - hypothetical protein, at 922,873 to 922,992
GFF2042
GFF2043 - Glycine/D-amino acid oxidase (deaminating) in putrescine utilization cluster, at 922,965 to 924,266
GFF2043
Position (kb) 920
921
922
923 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 919.794 kb on - strand, within GFF2038 at 920.033 kb on + strand, within GFF2038 at 920.403 kb on - strand, within GFF2038 at 920.403 kb on - strand, within GFF2038 at 920.403 kb on - strand, within GFF2038 at 920.571 kb on + strand, within GFF2039 at 920.571 kb on + strand, within GFF2039 at 920.571 kb on + strand, within GFF2039 at 920.572 kb on - strand, within GFF2039 at 920.572 kb on - strand, within GFF2039 at 920.572 kb on - strand, within GFF2039 at 920.712 kb on + strand at 920.712 kb on + strand at 920.712 kb on + strand at 920.712 kb on + strand at 920.712 kb on + strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.713 kb on - strand at 920.788 kb on + strand at 920.929 kb on + strand, within GFF2040 at 920.930 kb on - strand, within GFF2040 at 920.930 kb on - strand, within GFF2040 at 921.190 kb on + strand, within GFF2040 at 921.208 kb on + strand, within GFF2040 at 921.208 kb on + strand, within GFF2040 at 921.209 kb on - strand, within GFF2040 at 921.257 kb on - strand, within GFF2040 at 921.257 kb on - strand, within GFF2040 at 921.391 kb on + strand, within GFF2040 at 921.392 kb on - strand, within GFF2040 at 921.508 kb on + strand, within GFF2040 at 921.508 kb on + strand, within GFF2040 at 921.509 kb on - strand, within GFF2040 at 921.509 kb on - strand, within GFF2040 at 921.619 kb on + strand, within GFF2040 at 921.619 kb on + strand, within GFF2040 at 921.620 kb on - strand, within GFF2040 at 921.620 kb on - strand, within GFF2040 at 921.620 kb on - strand, within GFF2040 at 921.632 kb on - strand, within GFF2040 at 921.632 kb on - strand, within GFF2040 at 921.695 kb on - strand, within GFF2040 at 921.722 kb on - strand, within GFF2040 at 921.790 kb on + strand, within GFF2040 at 921.791 kb on - strand, within GFF2040 at 921.791 kb on - strand, within GFF2040 at 921.791 kb on - strand, within GFF2040 at 921.791 kb on - strand, within GFF2040 at 921.791 kb on - strand, within GFF2040 at 921.892 kb on + strand, within GFF2040 at 921.893 kb on - strand, within GFF2040 at 921.894 kb on - strand, within GFF2040 at 922.084 kb on + strand at 922.085 kb on - strand at 922.351 kb on - strand, within GFF2041 at 922.537 kb on - strand, within GFF2041 at 922.698 kb on + strand at 922.698 kb on + strand at 922.699 kb on - strand at 922.699 kb on - strand at 922.699 kb on - strand at 922.966 kb on + strand at 922.966 kb on + strand at 922.966 kb on + strand at 922.966 kb on + strand at 923.065 kb on + strand at 923.065 kb on + strand at 923.065 kb on + strand at 923.066 kb on - strand at 923.066 kb on - strand at 923.066 kb on - strand at 923.066 kb on - strand at 923.066 kb on - strand at 923.164 kb on + strand, within GFF2043 at 923.165 kb on - strand, within GFF2043 at 923.167 kb on + strand, within GFF2043 at 923.167 kb on + strand, within GFF2043 at 923.167 kb on + strand, within GFF2043 at 923.167 kb on + strand, within GFF2043 at 923.167 kb on + strand, within GFF2043 at 923.167 kb on + strand, within GFF2043 at 923.168 kb on - strand, within GFF2043 at 923.168 kb on - strand, within GFF2043 at 923.168 kb on - strand, within GFF2043 at 923.168 kb on - strand, within GFF2043
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1 remove 919,794 - GFF2038 0.13 -1.1 920,033 + GFF2038 0.42 -0.3 920,403 - GFF2038 0.88 -0.2 920,403 - GFF2038 0.88 -0.5 920,403 - GFF2038 0.88 -0.8 920,571 + GFF2039 0.30 -0.2 920,571 + GFF2039 0.30 +0.9 920,571 + GFF2039 0.30 +0.4 920,572 - GFF2039 0.31 +0.1 920,572 - GFF2039 0.31 +0.2 920,572 - GFF2039 0.31 +0.0 920,712 + -0.1 920,712 + -0.7 920,712 + -0.6 920,712 + +0.7 920,712 + -1.5 920,713 - -1.2 920,713 - +1.9 920,713 - -0.8 920,713 - -0.4 920,713 - +0.5 920,713 - +0.4 920,713 - -0.3 920,713 - -0.6 920,713 - -0.4 920,713 - -0.9 920,713 - -0.2 920,713 - -0.3 920,713 - -0.8 920,713 - -1.2 920,788 + -2.4 920,929 + GFF2040 0.14 -0.7 920,930 - GFF2040 0.14 +0.1 920,930 - GFF2040 0.14 -0.7 921,190 + GFF2040 0.32 -1.3 921,208 + GFF2040 0.33 -2.1 921,208 + GFF2040 0.33 -1.5 921,209 - GFF2040 0.33 -1.7 921,257 - GFF2040 0.36 -1.6 921,257 - GFF2040 0.36 -1.3 921,391 + GFF2040 0.45 -0.2 921,392 - GFF2040 0.45 -1.7 921,508 + GFF2040 0.53 -1.4 921,508 + GFF2040 0.53 -0.6 921,509 - GFF2040 0.53 -1.2 921,509 - GFF2040 0.53 -0.1 921,619 + GFF2040 0.60 -1.8 921,619 + GFF2040 0.60 -1.6 921,620 - GFF2040 0.60 -3.2 921,620 - GFF2040 0.60 -1.8 921,620 - GFF2040 0.60 -1.5 921,632 - GFF2040 0.61 -1.3 921,632 - GFF2040 0.61 -1.6 921,695 - GFF2040 0.65 -0.3 921,722 - GFF2040 0.67 -1.9 921,790 + GFF2040 0.72 -1.3 921,791 - GFF2040 0.72 -2.2 921,791 - GFF2040 0.72 -1.9 921,791 - GFF2040 0.72 -1.3 921,791 - GFF2040 0.72 -0.2 921,791 - GFF2040 0.72 -1.3 921,892 + GFF2040 0.79 -3.7 921,893 - GFF2040 0.79 -1.0 921,894 - GFF2040 0.79 -1.9 922,084 + -2.1 922,085 - -1.0 922,351 - GFF2041 0.29 -0.5 922,537 - GFF2041 0.67 +0.2 922,698 + -0.6 922,698 + -1.1 922,699 - +0.2 922,699 - -0.2 922,699 - +0.3 922,966 + +1.1 922,966 + +0.5 922,966 + -0.1 922,966 + -0.2 923,065 + -3.8 923,065 + -3.2 923,065 + -5.1 923,066 - -1.2 923,066 - -3.3 923,066 - -2.6 923,066 - -1.5 923,066 - -3.0 923,164 + GFF2043 0.15 -4.0 923,165 - GFF2043 0.15 -1.8 923,167 + GFF2043 0.16 -0.5 923,167 + GFF2043 0.16 -0.9 923,167 + GFF2043 0.16 -0.9 923,167 + GFF2043 0.16 -3.1 923,167 + GFF2043 0.16 -1.4 923,167 + GFF2043 0.16 -0.7 923,168 - GFF2043 0.16 -2.7 923,168 - GFF2043 0.16 -2.3 923,168 - GFF2043 0.16 -3.9 923,168 - GFF2043 0.16 -4.7
Or see this region's nucleotide sequence