Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF146 and GFF147 are separated by 1 nucleotides GFF147 and GFF148 are separated by 250 nucleotides GFF148 and GFF149 are separated by 45 nucleotides GFF149 and GFF150 are separated by 23 nucleotides GFF150 and GFF151 are separated by 715 nucleotides
GFF146 - Flagellar motor protein, at 163,067 to 163,729
GFF146
GFF147 - FIG01210206: hypothetical protein, at 163,731 to 164,264
GFF147
GFF148 - hypothetical protein, at 164,515 to 164,652
GFF148
GFF149 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 164,698 to 165,960
GFF149
GFF150 - hypothetical protein, at 165,984 to 166,142
GFF150
GFF151 - Short-chain dehydrogenase/reductase SDR, at 166,858 to 167,691
GFF151
Position (kb) 164
165
166 Strain fitness (log2 ratio) -1
0
1 at 163.764 kb on + strand at 163.764 kb on + strand at 163.765 kb on - strand at 164.154 kb on + strand, within GFF147 at 164.155 kb on - strand, within GFF147 at 165.169 kb on + strand, within GFF149 at 165.169 kb on + strand, within GFF149 at 165.206 kb on - strand, within GFF149 at 165.673 kb on + strand, within GFF149 at 165.674 kb on - strand, within GFF149 at 165.674 kb on - strand, within GFF149 at 165.674 kb on - strand, within GFF149 at 165.865 kb on + strand at 165.866 kb on - strand at 165.866 kb on - strand at 165.866 kb on - strand at 165.961 kb on + strand at 165.962 kb on - strand at 165.962 kb on - strand at 165.962 kb on - strand at 166.024 kb on + strand, within GFF150 at 166.111 kb on + strand, within GFF150 at 166.111 kb on + strand, within GFF150 at 166.495 kb on + strand at 166.496 kb on - strand at 166.496 kb on - strand at 166.881 kb on - strand at 166.884 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1 remove 163,764 + +0.7 163,764 + +0.2 163,765 - +0.5 164,154 + GFF147 0.79 -0.1 164,155 - GFF147 0.79 -0.1 165,169 + GFF149 0.37 -0.2 165,169 + GFF149 0.37 +1.5 165,206 - GFF149 0.40 +0.5 165,673 + GFF149 0.77 +0.9 165,674 - GFF149 0.77 -0.1 165,674 - GFF149 0.77 +0.7 165,674 - GFF149 0.77 +0.6 165,865 + +0.3 165,866 - +0.5 165,866 - -0.1 165,866 - -0.9 165,961 + -0.8 165,962 - -0.2 165,962 - -0.5 165,962 - +0.1 166,024 + GFF150 0.25 -0.2 166,111 + GFF150 0.80 +0.2 166,111 + GFF150 0.80 -0.3 166,495 + -0.1 166,496 - -0.1 166,496 - +0.1 166,881 - +0.6 166,884 - -0.1
Or see this region's nucleotide sequence