Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF1203

Experiment: Ying_Others16 rep A; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1202 and GFF1203 are separated by 34 nucleotidesGFF1203 and GFF1204 are separated by 146 nucleotides GFF1202 - Benzoyl-CoA oxygenase component B, at 62,663 to 64,090 GFF1202 GFF1203 - Benzoyl-CoA-dihydrodiol lyase (EC 4.1.2.44), at 64,125 to 65,792 GFF1203 GFF1204 - Regulatory protein of benzoate catabolism, at 65,939 to 66,886 GFF1204 Position (kb) 64 65 66Strain fitness (log2 ratio) -2 -1 0 1at 63.153 kb on + strand, within GFF1202at 63.153 kb on + strand, within GFF1202at 63.154 kb on - strand, within GFF1202at 63.154 kb on - strand, within GFF1202at 63.154 kb on - strand, within GFF1202at 63.154 kb on - strand, within GFF1202at 63.211 kb on - strand, within GFF1202at 63.462 kb on + strand, within GFF1202at 63.462 kb on + strand, within GFF1202at 63.463 kb on - strand, within GFF1202at 63.463 kb on - strand, within GFF1202at 63.609 kb on + strand, within GFF1202at 63.609 kb on + strand, within GFF1202at 63.610 kb on - strand, within GFF1202at 63.672 kb on + strand, within GFF1202at 63.672 kb on + strand, within GFF1202at 63.672 kb on + strand, within GFF1202at 63.672 kb on + strand, within GFF1202at 63.672 kb on + strand, within GFF1202at 63.673 kb on - strand, within GFF1202at 63.673 kb on - strand, within GFF1202at 63.673 kb on - strand, within GFF1202at 63.673 kb on - strand, within GFF1202at 63.673 kb on - strand, within GFF1202at 63.673 kb on - strand, within GFF1202at 63.939 kb on + strand, within GFF1202at 64.074 kb on + strandat 64.075 kb on - strandat 64.075 kb on - strandat 64.168 kb on + strandat 64.169 kb on - strandat 64.169 kb on - strandat 64.169 kb on - strandat 64.169 kb on - strandat 64.169 kb on - strandat 64.588 kb on + strand, within GFF1203at 64.588 kb on + strand, within GFF1203at 64.588 kb on + strand, within GFF1203at 64.588 kb on + strand, within GFF1203at 64.589 kb on - strand, within GFF1203at 64.589 kb on - strand, within GFF1203at 64.589 kb on - strand, within GFF1203at 64.996 kb on + strand, within GFF1203at 64.996 kb on + strand, within GFF1203at 64.996 kb on + strand, within GFF1203at 64.996 kb on + strand, within GFF1203at 64.996 kb on + strand, within GFF1203at 64.996 kb on + strand, within GFF1203at 64.996 kb on + strand, within GFF1203at 64.997 kb on - strand, within GFF1203at 64.997 kb on - strand, within GFF1203at 64.997 kb on - strand, within GFF1203at 65.002 kb on + strand, within GFF1203at 65.002 kb on + strand, within GFF1203at 65.003 kb on - strand, within GFF1203at 65.003 kb on - strand, within GFF1203at 65.003 kb on - strand, within GFF1203at 65.003 kb on - strand, within GFF1203at 65.417 kb on - strand, within GFF1203at 65.417 kb on - strand, within GFF1203at 65.417 kb on - strand, within GFF1203at 65.632 kb on + strandat 65.633 kb on - strandat 65.633 kb on - strandat 65.633 kb on - strandat 65.633 kb on - strandat 65.633 kb on - strandat 65.633 kb on - strandat 65.633 kb on - strandat 65.633 kb on - strandat 65.633 kb on - strandat 65.633 kb on - strandat 65.654 kb on - strandat 65.737 kb on + strandat 65.737 kb on - strandat 65.738 kb on - strandat 65.759 kb on - strandat 66.015 kb on + strandat 66.015 kb on + strandat 66.015 kb on + strandat 66.015 kb on + strandat 66.016 kb on - strandat 66.016 kb on - strandat 66.016 kb on - strandat 66.051 kb on + strand, within GFF1204at 66.051 kb on + strand, within GFF1204at 66.051 kb on + strand, within GFF1204at 66.052 kb on - strand, within GFF1204at 66.052 kb on - strand, within GFF1204at 66.052 kb on - strand, within GFF1204at 66.052 kb on - strand, within GFF1204at 66.052 kb on - strand, within GFF1204at 66.052 kb on - strand, within GFF1204at 66.052 kb on - strand, within GFF1204at 66.264 kb on + strand, within GFF1204at 66.300 kb on + strand, within GFF1204at 66.325 kb on - strand, within GFF1204at 66.335 kb on + strand, within GFF1204at 66.696 kb on + strand, within GFF1204

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1
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63,153 + GFF1202 0.34 -0.0
63,153 + GFF1202 0.34 +0.3
63,154 - GFF1202 0.34 -0.2
63,154 - GFF1202 0.34 +0.5
63,154 - GFF1202 0.34 +0.0
63,154 - GFF1202 0.34 -2.0
63,211 - GFF1202 0.38 -0.9
63,462 + GFF1202 0.56 -0.1
63,462 + GFF1202 0.56 +0.4
63,463 - GFF1202 0.56 +0.6
63,463 - GFF1202 0.56 +0.1
63,609 + GFF1202 0.66 -0.1
63,609 + GFF1202 0.66 -0.7
63,610 - GFF1202 0.66 +1.2
63,672 + GFF1202 0.71 +0.5
63,672 + GFF1202 0.71 -0.4
63,672 + GFF1202 0.71 -0.2
63,672 + GFF1202 0.71 -1.4
63,672 + GFF1202 0.71 -0.2
63,673 - GFF1202 0.71 -0.4
63,673 - GFF1202 0.71 +0.1
63,673 - GFF1202 0.71 +0.5
63,673 - GFF1202 0.71 +0.4
63,673 - GFF1202 0.71 +0.3
63,673 - GFF1202 0.71 +1.4
63,939 + GFF1202 0.89 -0.5
64,074 + -0.1
64,075 - +0.3
64,075 - +0.3
64,168 + -0.2
64,169 - +0.4
64,169 - +0.0
64,169 - -0.6
64,169 - +0.1
64,169 - +0.4
64,588 + GFF1203 0.28 -0.4
64,588 + GFF1203 0.28 +0.3
64,588 + GFF1203 0.28 +0.0
64,588 + GFF1203 0.28 -0.3
64,589 - GFF1203 0.28 -0.4
64,589 - GFF1203 0.28 +0.0
64,589 - GFF1203 0.28 -1.4
64,996 + GFF1203 0.52 +0.6
64,996 + GFF1203 0.52 +0.2
64,996 + GFF1203 0.52 -0.1
64,996 + GFF1203 0.52 -0.3
64,996 + GFF1203 0.52 -0.1
64,996 + GFF1203 0.52 -0.5
64,996 + GFF1203 0.52 -0.7
64,997 - GFF1203 0.52 -0.2
64,997 - GFF1203 0.52 -0.1
64,997 - GFF1203 0.52 +0.6
65,002 + GFF1203 0.53 -0.3
65,002 + GFF1203 0.53 +0.1
65,003 - GFF1203 0.53 -0.1
65,003 - GFF1203 0.53 -0.1
65,003 - GFF1203 0.53 +1.2
65,003 - GFF1203 0.53 -0.1
65,417 - GFF1203 0.77 +1.1
65,417 - GFF1203 0.77 +0.4
65,417 - GFF1203 0.77 +0.2
65,632 + -0.4
65,633 - +1.1
65,633 - -0.4
65,633 - -0.4
65,633 - -1.8
65,633 - -0.1
65,633 - -0.6
65,633 - +0.4
65,633 - +0.8
65,633 - -0.0
65,633 - +0.9
65,654 - -0.1
65,737 + +0.1
65,737 - -0.2
65,738 - +0.6
65,759 - +0.6
66,015 + -0.2
66,015 + -0.8
66,015 + +0.3
66,015 + +0.3
66,016 - +0.0
66,016 - -0.6
66,016 - -1.7
66,051 + GFF1204 0.12 +0.4
66,051 + GFF1204 0.12 +0.2
66,051 + GFF1204 0.12 -0.3
66,052 - GFF1204 0.12 -1.0
66,052 - GFF1204 0.12 -2.3
66,052 - GFF1204 0.12 -0.5
66,052 - GFF1204 0.12 +0.5
66,052 - GFF1204 0.12 -0.9
66,052 - GFF1204 0.12 +0.6
66,052 - GFF1204 0.12 +0.5
66,264 + GFF1204 0.34 -1.5
66,300 + GFF1204 0.38 -2.2
66,325 - GFF1204 0.41 -1.0
66,335 + GFF1204 0.42 -0.7
66,696 + GFF1204 0.80 -0.4

Or see this region's nucleotide sequence