Experiment: Ying_Others16 rep A; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1043 and GFF1044 overlap by 4 nucleotides GFF1044 and GFF1045 are separated by 19 nucleotides GFF1045 and GFF1046 overlap by 11 nucleotides
GFF1043 - Cytochrome oxidase biogenesis protein Sco1/SenC/PrrC, putative copper metallochaperone, at 782,176 to 782,859
GFF1043
GFF1044 - Copper-containing nitrite reductase (EC 1.7.2.1), at 782,856 to 783,473
GFF1044
GFF1045 - Cytochrome c oxidase subunit CcoO (EC 1.9.3.1), at 783,493 to 784,083
GFF1045
GFF1046 - Cytochrome c oxidase subunit CcoN (EC 1.9.3.1), at 784,073 to 785,716
GFF1046
Position (kb) 783
784
785 Strain fitness (log2 ratio) -2
-1
0
1 at 782.624 kb on + strand, within GFF1043 at 783.052 kb on + strand, within GFF1044 at 783.052 kb on + strand, within GFF1044 at 783.052 kb on + strand, within GFF1044 at 783.097 kb on - strand, within GFF1044 at 783.097 kb on - strand, within GFF1044 at 783.214 kb on + strand, within GFF1044 at 783.214 kb on + strand, within GFF1044 at 783.340 kb on + strand, within GFF1044 at 783.341 kb on - strand, within GFF1044 at 783.341 kb on - strand, within GFF1044 at 783.341 kb on - strand, within GFF1044 at 783.548 kb on + strand at 783.548 kb on + strand at 783.549 kb on - strand at 783.549 kb on - strand at 783.549 kb on - strand at 783.549 kb on - strand at 783.668 kb on + strand, within GFF1045 at 783.702 kb on - strand, within GFF1045 at 783.702 kb on - strand, within GFF1045 at 783.717 kb on - strand, within GFF1045 at 783.815 kb on + strand, within GFF1045 at 783.816 kb on - strand, within GFF1045 at 783.816 kb on - strand, within GFF1045 at 783.816 kb on - strand, within GFF1045 at 783.821 kb on + strand, within GFF1045 at 783.822 kb on - strand, within GFF1045 at 783.822 kb on - strand, within GFF1045 at 783.822 kb on - strand, within GFF1045 at 783.926 kb on + strand, within GFF1045 at 783.926 kb on + strand, within GFF1045 at 783.926 kb on + strand, within GFF1045 at 783.926 kb on + strand, within GFF1045 at 783.927 kb on - strand, within GFF1045 at 784.005 kb on - strand, within GFF1045 at 784.005 kb on - strand, within GFF1045 at 784.321 kb on - strand, within GFF1046 at 784.321 kb on - strand, within GFF1046 at 784.324 kb on + strand, within GFF1046 at 784.413 kb on + strand, within GFF1046 at 784.449 kb on + strand, within GFF1046 at 784.449 kb on + strand, within GFF1046 at 784.458 kb on - strand, within GFF1046 at 784.551 kb on + strand, within GFF1046 at 784.552 kb on - strand, within GFF1046 at 784.594 kb on - strand, within GFF1046 at 784.791 kb on + strand, within GFF1046 at 784.791 kb on + strand, within GFF1046 at 784.792 kb on - strand, within GFF1046 at 784.830 kb on + strand, within GFF1046 at 784.833 kb on + strand, within GFF1046 at 784.833 kb on + strand, within GFF1046 at 784.834 kb on - strand, within GFF1046 at 784.887 kb on + strand, within GFF1046 at 784.920 kb on - strand, within GFF1046 at 785.001 kb on + strand, within GFF1046 at 785.001 kb on + strand, within GFF1046 at 785.001 kb on + strand, within GFF1046 at 785.002 kb on - strand, within GFF1046 at 785.002 kb on - strand, within GFF1046 at 785.035 kb on - strand, within GFF1046
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Others16 rep A; time point 1 remove 782,624 + GFF1043 0.65 -0.3 783,052 + GFF1044 0.32 +0.4 783,052 + GFF1044 0.32 -0.1 783,052 + GFF1044 0.32 +0.9 783,097 - GFF1044 0.39 -1.8 783,097 - GFF1044 0.39 -0.2 783,214 + GFF1044 0.58 -0.6 783,214 + GFF1044 0.58 -0.5 783,340 + GFF1044 0.78 -0.4 783,341 - GFF1044 0.78 +0.4 783,341 - GFF1044 0.78 -0.1 783,341 - GFF1044 0.78 +0.6 783,548 + +0.4 783,548 + +0.2 783,549 - +0.6 783,549 - -0.2 783,549 - -1.7 783,549 - +0.4 783,668 + GFF1045 0.30 +0.3 783,702 - GFF1045 0.35 -0.4 783,702 - GFF1045 0.35 -0.8 783,717 - GFF1045 0.38 +0.0 783,815 + GFF1045 0.54 -0.4 783,816 - GFF1045 0.55 +0.5 783,816 - GFF1045 0.55 +0.0 783,816 - GFF1045 0.55 -0.1 783,821 + GFF1045 0.55 +1.0 783,822 - GFF1045 0.56 -0.5 783,822 - GFF1045 0.56 -0.7 783,822 - GFF1045 0.56 +0.1 783,926 + GFF1045 0.73 -0.5 783,926 + GFF1045 0.73 +0.0 783,926 + GFF1045 0.73 -0.1 783,926 + GFF1045 0.73 -0.1 783,927 - GFF1045 0.73 -0.7 784,005 - GFF1045 0.87 -0.4 784,005 - GFF1045 0.87 +0.2 784,321 - GFF1046 0.15 -0.0 784,321 - GFF1046 0.15 +0.3 784,324 + GFF1046 0.15 +0.1 784,413 + GFF1046 0.21 -0.4 784,449 + GFF1046 0.23 -0.4 784,449 + GFF1046 0.23 -1.2 784,458 - GFF1046 0.23 +0.5 784,551 + GFF1046 0.29 -0.4 784,552 - GFF1046 0.29 -0.2 784,594 - GFF1046 0.32 -0.5 784,791 + GFF1046 0.44 -2.1 784,791 + GFF1046 0.44 -0.3 784,792 - GFF1046 0.44 -0.6 784,830 + GFF1046 0.46 -0.8 784,833 + GFF1046 0.46 +0.7 784,833 + GFF1046 0.46 -0.6 784,834 - GFF1046 0.46 -0.4 784,887 + GFF1046 0.50 +0.3 784,920 - GFF1046 0.52 -0.6 785,001 + GFF1046 0.56 -0.7 785,001 + GFF1046 0.56 -0.1 785,001 + GFF1046 0.56 +0.2 785,002 - GFF1046 0.57 -0.7 785,002 - GFF1046 0.57 -1.1 785,035 - GFF1046 0.59 -0.4
Or see this region's nucleotide sequence