Strain Fitness in Escherichia fergusonii Becca around EFB2_01141

Experiment: BHIS_CaCl2 no phage control with 14 member community

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with 14 member community
1,196,425	+		EFB2_01139	0.78	-0.4
1,196,425	+		EFB2_01139	0.78	-0.3
1,196,425	+		EFB2_01139	0.78	-0.8
1,196,425	+		EFB2_01139	0.78	-0.5
1,196,425	+		EFB2_01139	0.78	+0.4
1,196,426	-		EFB2_01139	0.78	-1.4
1,196,426	-		EFB2_01139	0.78	+0.2
1,196,426	-		EFB2_01139	0.78	+0.3
1,196,426	-		EFB2_01139	0.78	+0.9
1,196,426	-		EFB2_01139	0.78	+0.1
1,196,426	-		EFB2_01139	0.78	-0.4
1,196,426	-		EFB2_01139	0.78	+1.0
1,196,426	-		EFB2_01139	0.78	-0.8
1,196,426	-		EFB2_01139	0.78	-2.1
1,196,436	-		EFB2_01139	0.79	+1.0
1,196,436	-		EFB2_01139	0.79	+0.5
1,196,476	+		EFB2_01139	0.84	-0.9
1,196,477	-		EFB2_01139	0.84	-0.1
1,196,499	-		EFB2_01139	0.86	+0.5
1,196,499	-		EFB2_01139	0.86	+1.8
1,196,513	+		EFB2_01139	0.88	+2.1
1,196,526	-		EFB2_01139	0.89	+1.3
1,196,538	+				+0.6
1,196,538	+				-1.4
1,196,538	+				-0.1
1,196,539	-				+1.3
1,196,539	-				-0.3
1,196,539	-				-2.0
1,196,539	-				-0.0
1,196,539	-				-0.9
1,196,539	-				+0.5
1,196,555	+				-1.5
1,196,556	-				-1.1
1,196,556	-				+1.0
1,196,570	-				+0.2
1,196,599	+				-0.3
1,196,620	+				-0.6
1,196,620	+				-1.4
1,196,621	-				-0.5
1,196,645	+				+1.8
1,196,646	-				+0.9
1,196,646	-				+0.4
1,196,664	+				+1.4
1,196,664	+				+1.7
1,196,664	+				+1.3
1,196,678	+				-1.8
1,196,682	+				-0.6
1,196,682	+				-0.3
1,196,682	+				-0.6
1,196,683	-				-1.4
1,196,725	+		EFB2_01140	0.15	-1.6
1,196,725	+		EFB2_01140	0.15	-0.8
1,196,726	-		EFB2_01140	0.15	-0.4
1,196,749	-		EFB2_01140	0.19	+0.7
1,196,777	+		EFB2_01140	0.24	+0.6
1,196,777	+		EFB2_01140	0.24	-3.2
1,196,777	+		EFB2_01140	0.24	+0.5
1,196,778	-		EFB2_01140	0.24	+1.0
1,196,778	-		EFB2_01140	0.24	+0.7
1,196,778	-		EFB2_01140	0.24	-1.2
1,196,779	+		EFB2_01140	0.24	+0.7
1,196,779	+		EFB2_01140	0.24	+0.7
1,196,779	+		EFB2_01140	0.24	+0.6
1,196,779	+		EFB2_01140	0.24	+0.8
1,196,780	-		EFB2_01140	0.24	+1.1
1,196,780	-		EFB2_01140	0.24	-0.2
1,196,795	+		EFB2_01140	0.27	-0.4
1,196,798	+		EFB2_01140	0.27	-1.6
1,196,798	+		EFB2_01140	0.27	-0.1
1,196,799	-		EFB2_01140	0.27	+0.9
1,196,799	-		EFB2_01140	0.27	-0.5
1,196,800	+		EFB2_01140	0.28	-1.0
1,196,800	+		EFB2_01140	0.28	-0.2
1,196,801	-		EFB2_01140	0.28	-0.2
1,196,801	-		EFB2_01140	0.28	+3.3
1,196,801	-		EFB2_01140	0.28	+0.1
1,196,801	-		EFB2_01140	0.28	+1.1
1,196,801	-		EFB2_01140	0.28	-0.1
1,196,880	+		EFB2_01140	0.41	-0.4
1,196,881	-		EFB2_01140	0.41	+0.3
1,196,900	+		EFB2_01140	0.44	-2.8
1,196,900	+		EFB2_01140	0.44	-2.5
1,196,903	+		EFB2_01140	0.45	+1.3
1,196,903	+		EFB2_01140	0.45	-1.3
1,196,904	-		EFB2_01140	0.45	-0.1
1,196,904	-		EFB2_01140	0.45	-0.7
1,196,911	-		EFB2_01140	0.46	-0.3
1,196,961	+		EFB2_01140	0.54	-0.6
1,196,999	+		EFB2_01140	0.61	-0.9
1,197,011	+		EFB2_01140	0.63	-1.4
1,197,020	+		EFB2_01140	0.64	+0.3
1,197,020	+		EFB2_01140	0.64	+0.1
1,197,020	+		EFB2_01140	0.64	+0.8
1,197,020	+		EFB2_01140	0.64	+0.3
1,197,020	+		EFB2_01140	0.64	+0.4
1,197,020	+		EFB2_01140	0.64	-1.2
1,197,020	+		EFB2_01140	0.64	-0.0
1,197,020	+		EFB2_01140	0.64	+1.3
1,197,021	-		EFB2_01140	0.64	-0.1
1,197,021	-		EFB2_01140	0.64	-1.4
1,197,021	-		EFB2_01140	0.64	-1.3
1,197,021	-		EFB2_01140	0.64	-0.7
1,197,021	-		EFB2_01140	0.64	+0.9
1,197,021	-		EFB2_01140	0.64	-0.8
1,197,021	-		EFB2_01140	0.64	-1.5
1,197,021	-		EFB2_01140	0.64	+0.7
1,197,033	+		EFB2_01140	0.66	-2.1
1,197,034	-		EFB2_01140	0.66	+2.0
1,197,042	+		EFB2_01140	0.68	-1.1
1,197,042	+		EFB2_01140	0.68	-0.4
1,197,042	+		EFB2_01140	0.68	-0.9
1,197,042	+		EFB2_01140	0.68	-0.8
1,197,042	+		EFB2_01140	0.68	+0.7
1,197,042	+		EFB2_01140	0.68	+0.2
1,197,042	+		EFB2_01140	0.68	+1.7
1,197,042	+		EFB2_01140	0.68	-0.1
1,197,042	+		EFB2_01140	0.68	-0.6
1,197,043	-		EFB2_01140	0.68	-0.6
1,197,043	-		EFB2_01140	0.68	+1.8
1,197,043	-		EFB2_01140	0.68	+0.3
1,197,043	-		EFB2_01140	0.68	+1.7
1,197,043	-		EFB2_01140	0.68	-0.3
1,197,043	-		EFB2_01140	0.68	+0.2
1,197,043	-		EFB2_01140	0.68	-1.2
1,197,043	-		EFB2_01140	0.68	+0.9
1,197,045	+		EFB2_01140	0.68	-0.1
1,197,045	+		EFB2_01140	0.68	-2.6
1,197,046	-		EFB2_01140	0.68	+0.5
1,197,046	-		EFB2_01140	0.68	+0.0
1,197,067	+		EFB2_01140	0.72	+1.4
1,197,074	+		EFB2_01140	0.73	+1.1
1,197,074	+		EFB2_01140	0.73	+0.3
1,197,075	-		EFB2_01140	0.73	-1.5
1,197,075	-		EFB2_01140	0.73	+0.3
1,197,075	-		EFB2_01140	0.73	+0.6
1,197,077	+		EFB2_01140	0.73	-2.8
1,197,077	+		EFB2_01140	0.73	+1.0
1,197,078	-		EFB2_01140	0.74	-0.1
1,197,093	-		EFB2_01140	0.76	-2.1
1,197,098	+		EFB2_01140	0.77	-0.1
1,197,098	+		EFB2_01140	0.77	-3.5
1,197,098	+		EFB2_01140	0.77	-0.7
1,197,119	-		EFB2_01140	0.80	+0.1
1,197,126	+		EFB2_01140	0.82	-0.4
1,197,127	-		EFB2_01140	0.82	-0.7
1,197,164	-		EFB2_01140	0.88	+1.8
1,197,164	-		EFB2_01140	0.88	-0.8
1,197,225	+				-0.3
1,197,270	+				+2.4
1,197,270	+				-0.1
1,197,271	-				+0.5
1,197,274	-				+0.3
1,197,274	-				+0.4
1,197,295	-				-0.6
1,197,342	+				+0.7
1,197,343	-				+1.3
1,197,343	-				+0.5
1,197,345	+				+2.3
1,197,376	+				+0.4
1,197,377	-				+0.4
1,197,387	+				-0.7
1,197,408	+				+0.8
1,197,408	+				-2.0
1,197,408	+				-0.9
1,197,408	+				-0.7
1,197,408	+				-1.7
1,197,408	+				+1.1
1,197,408	+				+1.0
1,197,408	+				-0.7
1,197,409	-				+0.5
1,197,409	-				-0.6
1,197,409	-				-1.3
1,197,424	-				+0.2
1,197,457	+				+1.1
1,197,457	+				-1.8
1,197,457	+				+0.5
1,197,457	+				-0.1
1,197,457	+				-1.0
1,197,457	+				-0.1
1,197,457	+				-0.7
1,197,458	-				-0.8
1,197,458	-				-1.2
1,197,458	-				+0.1
1,197,458	-				+1.2
1,197,458	-				+1.1
1,197,491	+		EFB2_01141	0.12	+0.1
1,197,492	-		EFB2_01141	0.12	-0.1
1,197,603	+		EFB2_01141	0.29	+0.9
1,197,603	+		EFB2_01141	0.29	+1.6
1,197,603	+		EFB2_01141	0.29	-1.7
1,197,603	+		EFB2_01141	0.29	+0.9
1,197,603	+		EFB2_01141	0.29	+0.2
1,197,603	+		EFB2_01141	0.29	+1.2
1,197,603	+		EFB2_01141	0.29	-0.3
1,197,603	+		EFB2_01141	0.29	+1.4
1,197,603	+		EFB2_01141	0.29	+0.7
1,197,603	+		EFB2_01141	0.29	-0.1
1,197,603	+		EFB2_01141	0.29	-1.8
1,197,603	+		EFB2_01141	0.29	+0.2
1,197,604	-		EFB2_01141	0.29	+0.5
1,197,604	-		EFB2_01141	0.29	+0.9
1,197,604	-		EFB2_01141	0.29	-0.7
1,197,604	-		EFB2_01141	0.29	+1.0
1,197,604	-		EFB2_01141	0.29	+0.4
1,197,604	-		EFB2_01141	0.29	-2.2
1,197,604	-		EFB2_01141	0.29	+0.4
1,197,604	-		EFB2_01141	0.29	+0.2
1,197,658	+		EFB2_01141	0.37	+1.1
1,197,658	+		EFB2_01141	0.37	+0.2
1,197,658	+		EFB2_01141	0.37	+1.3
1,197,747	+		EFB2_01141	0.50	+0.4
1,197,747	+		EFB2_01141	0.50	-0.4
1,197,747	+		EFB2_01141	0.50	+0.7
1,197,747	+		EFB2_01141	0.50	-0.3
1,197,747	+		EFB2_01141	0.50	-0.6
1,197,748	-		EFB2_01141	0.50	-0.1
1,197,748	-		EFB2_01141	0.50	-0.1
1,197,748	-		EFB2_01141	0.50	+1.0
1,197,771	+		EFB2_01141	0.54	-0.7
1,197,771	+		EFB2_01141	0.54	+0.0
1,197,771	+		EFB2_01141	0.54	+1.1
1,197,772	-		EFB2_01141	0.54	+0.8
1,197,772	-		EFB2_01141	0.54	-2.3
1,197,772	-		EFB2_01141	0.54	+0.7
1,197,772	-		EFB2_01141	0.54	-1.3
1,197,782	+		EFB2_01141	0.56	-0.1
1,197,782	+		EFB2_01141	0.56	+2.0
1,197,782	+		EFB2_01141	0.56	+0.5
1,197,782	+		EFB2_01141	0.56	+1.8
1,197,783	-		EFB2_01141	0.56	+0.8
1,197,783	-		EFB2_01141	0.56	+0.1
1,197,799	-		EFB2_01141	0.58	-0.3
1,197,812	+		EFB2_01141	0.60	+1.3
1,197,813	-		EFB2_01141	0.60	+2.6
1,197,824	+		EFB2_01141	0.62	+1.4
1,197,824	+		EFB2_01141	0.62	+0.5
1,197,824	+		EFB2_01141	0.62	-1.0
1,197,825	-		EFB2_01141	0.62	-1.3
1,197,825	-		EFB2_01141	0.62	-2.0
1,197,825	-		EFB2_01141	0.62	-0.4
1,197,828	+		EFB2_01141	0.62	-0.3
1,197,829	-		EFB2_01141	0.62	-1.9
1,197,829	-		EFB2_01141	0.62	+2.0
1,197,829	-		EFB2_01141	0.62	+0.7
1,197,841	+		EFB2_01141	0.64	+0.4
1,197,841	+		EFB2_01141	0.64	-0.1
1,197,842	-		EFB2_01141	0.64	+0.4
1,197,893	+		EFB2_01141	0.72	-0.9
1,197,893	+		EFB2_01141	0.72	-0.3
1,197,902	+		EFB2_01141	0.73	+0.1
1,197,902	+		EFB2_01141	0.73	-3.2
1,197,902	+		EFB2_01141	0.73	-0.8
1,197,902	+		EFB2_01141	0.73	-0.6
1,197,902	+		EFB2_01141	0.73	-0.4
1,197,902	+		EFB2_01141	0.73	-0.1
1,197,902	+		EFB2_01141	0.73	-1.2
1,197,902	+		EFB2_01141	0.73	+1.4
1,197,902	+		EFB2_01141	0.73	+0.1
1,197,902	+		EFB2_01141	0.73	+0.6
1,197,902	+		EFB2_01141	0.73	+0.8
1,197,903	-		EFB2_01141	0.74	+3.3
1,197,903	-		EFB2_01141	0.74	+1.1
1,197,903	-		EFB2_01141	0.74	+1.1
1,197,903	-		EFB2_01141	0.74	-0.2
1,197,903	-		EFB2_01141	0.74	+0.2
1,197,903	-		EFB2_01141	0.74	-2.4
1,197,903	-		EFB2_01141	0.74	-1.7
1,197,951	+		EFB2_01141	0.81	-0.8
1,197,951	+		EFB2_01141	0.81	-0.2
1,197,999	+		EFB2_01141	0.88	+0.5
1,198,007	+		EFB2_01141	0.89	-0.1
1,198,007	+		EFB2_01141	0.89	+0.8
1,198,007	+		EFB2_01141	0.89	+1.1
1,198,007	+		EFB2_01141	0.89	+0.0
1,198,007	+		EFB2_01141	0.89	-0.2
1,198,007	+		EFB2_01141	0.89	-0.6
1,198,007	+		EFB2_01141	0.89	-0.3
1,198,007	+		EFB2_01141	0.89	+0.0
1,198,007	+		EFB2_01141	0.89	+1.3
1,198,007	+		EFB2_01141	0.89	+0.7
1,198,008	-		EFB2_01141	0.89	-1.7
1,198,008	-		EFB2_01141	0.89	+0.3
1,198,008	-		EFB2_01141	0.89	+0.9
1,198,008	-		EFB2_01141	0.89	+0.7
1,198,008	-		EFB2_01141	0.89	+4.0
1,198,011	+		EFB2_01141	0.90	-0.3
1,198,011	+		EFB2_01141	0.90	-1.6
1,198,011	+		EFB2_01141	0.90	-0.3
1,198,011	+		EFB2_01141	0.90	-0.2
1,198,011	+		EFB2_01141	0.90	+1.2
1,198,012	-		EFB2_01141	0.90	+0.2
1,198,012	-		EFB2_01141	0.90	-1.5
1,198,012	-		EFB2_01141	0.90	+0.8
1,198,012	-		EFB2_01141	0.90	+0.1
1,198,012	-		EFB2_01141	0.90	+0.7
1,198,018	-				-1.5
1,198,059	+				-0.7
1,198,059	+				-0.5
1,198,059	+				-2.0
1,198,059	+				+0.7
1,198,060	-				+0.5
1,198,060	-				-2.8
1,198,060	-				-0.9
1,198,060	-				-1.9
1,198,060	-				-0.8
1,198,060	-				+1.0
1,198,060	-				+2.3
1,198,060	-				-0.7
1,198,060	-				-0.9
1,198,060	-				-1.7
1,198,060	-				+0.4
1,198,060	-				-0.7
1,198,060	-				-0.8
1,198,083	-				-3.0
1,198,090	+				+1.1
1,198,091	-				+0.9
1,198,091	-				+0.0
1,198,091	-				-0.2
1,198,091	-				-1.2
1,198,091	-				+2.0
1,198,092	+				-0.7
1,198,092	+				-0.4
1,198,092	+				-0.6
1,198,092	+				-0.1
1,198,092	+				+1.9
1,198,092	+				+0.4
1,198,093	-				+0.7
1,198,093	-				-1.7
1,198,093	-				+1.8
1,198,093	-				+0.1
1,198,099	+				-0.2
1,198,101	+				+0.4
1,198,101	+				-0.6
1,198,102	-				-1.7
1,198,102	-				-2.0
1,198,102	-				-1.9
1,198,102	-				+0.3
1,198,102	-				-1.9
1,198,102	-				+0.5
1,198,129	-				+1.5
1,198,136	+				-1.3
1,198,136	+				-0.5
1,198,136	+				+0.7
1,198,137	-				-1.8
1,198,137	-				-0.3
1,198,137	-				-0.9
1,198,137	-				+0.0
1,198,137	-				+1.1
1,198,139	-				+0.3
1,198,191	+				+0.3
1,198,192	-				-0.2
1,198,219	-				+0.8
1,198,242	-				+0.5
1,198,260	-				+1.6
1,198,260	-				+0.6
1,198,331	-				-0.1
1,198,353	+				-0.9
1,198,358	+				+0.2
1,198,358	+				-0.3
1,198,359	-				+1.3
1,198,359	-				-2.2
1,198,359	-				-0.4
1,198,359	-				+0.9
1,198,367	+				+1.4
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