Strain Fitness in Escherichia fergusonii Becca around EFB2_01122

Experiment: BHIS_CaCl2 no phage control with 14 member community

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS_CaCl2 no phage control with 14 member community
1,172,259	-		EFB2_01121	0.69	-1.4
1,172,291	+		EFB2_01121	0.72	+0.4
1,172,292	-		EFB2_01121	0.72	+1.9
1,172,292	-		EFB2_01121	0.72	-0.8
1,172,292	-		EFB2_01121	0.72	+1.1
1,172,292	-		EFB2_01121	0.72	-0.4
1,172,292	-		EFB2_01121	0.72	+0.5
1,172,292	-		EFB2_01121	0.72	-0.6
1,172,292	-		EFB2_01121	0.72	+0.2
1,172,309	+		EFB2_01121	0.73	-1.3
1,172,309	+		EFB2_01121	0.73	+0.2
1,172,310	-		EFB2_01121	0.73	+0.5
1,172,310	-		EFB2_01121	0.73	-0.3
1,172,310	-		EFB2_01121	0.73	-1.8
1,172,310	-		EFB2_01121	0.73	-0.1
1,172,310	-		EFB2_01121	0.73	+0.4
1,172,311	+		EFB2_01121	0.73	-0.3
1,172,311	+		EFB2_01121	0.73	+3.1
1,172,312	-		EFB2_01121	0.73	+0.3
1,172,312	-		EFB2_01121	0.73	+1.2
1,172,312	-		EFB2_01121	0.73	+0.1
1,172,312	-		EFB2_01121	0.73	-0.4
1,172,312	-		EFB2_01121	0.73	-0.7
1,172,329	+		EFB2_01121	0.74	-1.1
1,172,330	-		EFB2_01121	0.75	-0.7
1,172,330	-		EFB2_01121	0.75	-2.1
1,172,330	-		EFB2_01121	0.75	+0.3
1,172,334	-		EFB2_01121	0.75	+0.1
1,172,334	-		EFB2_01121	0.75	+0.8
1,172,334	-		EFB2_01121	0.75	+1.0
1,172,334	-		EFB2_01121	0.75	-1.0
1,172,344	+		EFB2_01121	0.76	+0.4
1,172,344	+		EFB2_01121	0.76	-0.2
1,172,344	+		EFB2_01121	0.76	-0.1
1,172,344	+		EFB2_01121	0.76	-1.8
1,172,344	+		EFB2_01121	0.76	-0.6
1,172,345	-		EFB2_01121	0.76	-0.2
1,172,345	-		EFB2_01121	0.76	-0.0
1,172,345	-		EFB2_01121	0.76	+0.7
1,172,345	-		EFB2_01121	0.76	-1.4
1,172,345	-		EFB2_01121	0.76	+0.2
1,172,345	-		EFB2_01121	0.76	-1.0
1,172,345	-		EFB2_01121	0.76	-1.9
1,172,345	-		EFB2_01121	0.76	+0.7
1,172,345	-		EFB2_01121	0.76	-0.9
1,172,345	-		EFB2_01121	0.76	+1.3
1,172,354	+		EFB2_01121	0.76	+0.8
1,172,355	-		EFB2_01121	0.77	+0.5
1,172,363	+		EFB2_01121	0.77	+0.1
1,172,364	-		EFB2_01121	0.77	+0.4
1,172,375	+		EFB2_01121	0.78	+0.7
1,172,375	+		EFB2_01121	0.78	-2.3
1,172,376	-		EFB2_01121	0.78	-0.1
1,172,391	+		EFB2_01121	0.79	+1.5
1,172,391	+		EFB2_01121	0.79	-0.8
1,172,391	+		EFB2_01121	0.79	-2.1
1,172,392	-		EFB2_01121	0.79	-1.2
1,172,392	-		EFB2_01121	0.79	-0.9
1,172,392	-		EFB2_01121	0.79	+0.4
1,172,392	-		EFB2_01121	0.79	+0.3
1,172,392	-		EFB2_01121	0.79	-0.6
1,172,392	-		EFB2_01121	0.79	-0.4
1,172,392	-		EFB2_01121	0.79	+1.3
1,172,424	-		EFB2_01121	0.82	+1.3
1,172,434	-		EFB2_01121	0.83	-0.4
1,172,612	+				+0.9
1,172,612	+				+1.1
1,172,659	+				+0.9
1,172,659	+				+0.4
1,172,659	+				-1.7
1,172,659	+				+0.3
1,172,659	+				+1.3
1,172,659	+				-0.7
1,172,660	-				-0.8
1,172,660	-				-0.9
1,172,660	-				-0.4
1,172,660	-				-0.9
1,172,660	-				-0.2
1,172,660	-				-0.3
1,172,660	-				+0.4
1,172,660	-				-1.8
1,172,682	+				+1.6
1,172,682	+				-1.4
1,172,683	-				-0.1
1,172,683	-				-0.8
1,172,726	+				-1.0
1,172,757	+				-2.6
1,172,757	+				-1.7
1,172,757	+				-3.4
1,172,758	-				+1.3
1,172,758	-				+0.3
1,172,758	-				-0.1
1,172,773	+				-0.0
1,172,774	-				-0.1
1,172,774	-				-0.6
1,172,776	+				+0.5
1,172,777	-				-0.1
1,172,777	-				+0.1
1,172,795	+				-1.7
1,172,795	+				-0.7
1,172,796	-				+1.3
1,172,806	+				+1.3
1,172,806	+				-0.0
1,172,806	+				-0.6
1,172,806	+				-0.6
1,172,806	+				+0.0
1,172,806	+				+0.5
1,172,806	+				-0.2
1,172,807	-				+0.3
1,172,807	-				+1.7
1,172,807	-				-0.5
1,172,807	-				-0.6
1,172,807	-				-1.2
1,172,807	-				+0.7
1,172,807	-				+0.2
1,172,807	-				+1.4
1,172,807	-				-1.1
1,172,807	-				+0.2
1,172,807	-				+0.0
1,172,807	-				+0.1
1,172,810	+				+1.8
1,172,810	+				+2.0
1,172,810	+				+0.4
1,172,810	+				-2.0
1,172,810	+				+2.3
1,172,810	+				-1.4
1,172,810	+				-1.1
1,172,810	+				-2.0
1,172,810	+				+0.8
1,172,810	+				-2.1
1,172,811	-				+1.0
1,172,811	-				+1.3
1,172,811	-				-0.8
1,172,811	-				-1.0
1,172,811	-				-1.2
1,172,811	-				-0.9
1,172,811	-				+0.5
1,172,811	-				-0.3
1,172,811	-				-1.8
1,172,811	-				-2.9
1,172,811	-				+0.3
1,172,811	-				-2.1
1,172,811	-				+0.3
1,172,815	-				-2.3
1,172,815	-				-1.4
1,172,815	-				+0.6
1,172,815	-				+1.4
1,172,815	-				-0.1
1,172,815	-				-0.1
1,172,815	-				-3.5
1,172,815	-				-3.7
1,172,837	-				-1.2
1,172,841	+				+0.7
1,172,842	-				+0.4
1,172,842	-				-0.1
1,172,846	+				+0.7
1,172,846	+				-0.1
1,172,847	-				+0.1
1,172,857	+				-1.1
1,172,857	+				-1.4
1,172,862	-				-0.9
1,172,862	-				+0.0
1,172,862	-				-1.0
1,172,875	+				-0.5
1,172,876	-				-0.6
1,172,876	-				+0.5
1,172,882	+				+0.3
1,172,882	+				-2.5
1,172,893	+				+0.3
1,172,893	+				+0.1
1,172,914	+				-0.4
1,172,915	-				-0.3
1,172,915	-				+1.0
1,172,915	-				+0.7
1,172,919	-				+0.3
1,172,958	+				-0.1
1,172,958	+				+0.5
1,172,958	+				-1.5
1,172,958	+				-0.1
1,172,959	-				-1.1
1,172,959	-				-0.2
1,172,959	-				+0.1
1,172,959	-				+1.1
1,172,959	-				-1.7
1,172,959	-				-0.4
1,172,959	-				+0.2
1,172,959	-				+0.9
1,172,959	-				-0.3
1,172,960	+				-1.0
1,172,960	+				+0.5
1,172,960	+				+2.0
1,172,960	+				+0.4
1,172,960	+				-1.4
1,172,960	+				+2.3
1,172,960	+				-0.9
1,172,960	+				+0.5
1,172,960	+				+0.0
1,172,960	+				-1.3
1,172,960	+				+0.3
1,172,960	+				-2.0
1,172,960	+				+1.1
1,172,960	+				+0.8
1,172,960	+				+0.4
1,172,960	+				-0.2
1,172,961	-				-1.3
1,172,961	-				-0.2
1,172,961	-				-1.1
1,172,961	-				-0.7
1,172,961	-				+0.9
1,172,961	-				+0.5
1,172,961	-				+2.0
1,172,961	-				-1.3
1,172,961	-				-0.3
1,172,961	-				-1.4
1,172,961	-				-0.1
1,172,961	-				-0.8
1,172,961	-				-0.3
1,172,961	-				+0.2
1,172,964	+				+0.1
1,172,964	+				+3.3
1,172,964	+				-2.0
1,172,964	+				+2.3
1,172,964	+				+0.5
1,172,964	+				-0.3
1,172,964	+				-0.3
1,172,964	+				-0.0
1,172,964	+				+0.8
1,172,964	+				-3.0
1,172,965	-				-0.5
1,172,965	-				+0.6
1,172,965	-				-1.2
1,172,965	-				-0.2
1,172,992	+				-2.2
1,172,992	+				+0.6
1,173,040	+				+0.9
1,173,040	+				+0.5
1,173,073	-				+1.2
1,173,073	-				-2.0
1,173,086	+				+0.0
1,173,087	-				-2.3
1,173,090	-				-2.4
1,173,101	+				+1.8
1,173,102	-				-1.7
1,173,134	+				+0.7
1,173,134	+				-2.6
1,173,134	+				-0.3
1,173,134	+				+1.0
1,173,134	+				+2.3
1,173,134	+				+0.2
1,173,135	-				+0.5
1,173,135	-				-1.7
1,173,135	-				-0.9
1,173,135	-				-0.1
1,173,135	-				+1.1
1,173,135	-				+0.3
1,173,136	+				-0.2
1,173,136	+				+1.8
1,173,137	-				-1.4
1,173,137	-				-0.7
1,173,137	-				+0.7
1,173,137	-				+0.0
1,173,137	-				-0.5
1,173,160	+				+0.4
1,173,160	+				-0.7
1,173,160	+				-0.6
1,173,160	+				-1.2
1,173,160	+				+0.8
1,173,160	+				-1.3
1,173,160	+				+0.5
1,173,160	+				-0.1
1,173,161	-				+1.7
1,173,161	-				+0.5
1,173,161	-				+0.2
1,173,161	-				-0.1
1,173,161	-				+0.0
1,173,161	-				-0.3
1,173,161	-				-0.1
1,173,161	-				-3.0
1,173,161	-				+0.5
1,173,215	+				+1.7
1,173,215	+				-2.7
1,173,215	+				+1.5
1,173,215	+				-0.3
1,173,215	+				-0.4
1,173,215	+				-1.7
1,173,215	+				+1.5
1,173,215	+				-0.0
1,173,215	+				-0.3
1,173,215	+				-0.2
1,173,215	+				-1.2
1,173,215	+				+1.0
1,173,215	+				-1.5
1,173,215	+				+1.5
1,173,215	+				-0.4
1,173,215	+				+0.5
1,173,215	+				-0.7
1,173,215	+				+3.1
1,173,216	-				+1.1
1,173,216	-				-0.3
1,173,216	-				+0.4
1,173,216	-				-0.6
1,173,216	-				-1.6
1,173,216	-				+0.1
1,173,216	-				+0.6
1,173,216	-				-0.6
1,173,216	-				-1.2
1,173,216	-				-1.0
1,173,216	-				-0.4
1,173,216	-				+0.3
1,173,216	-				+0.2
1,173,216	-				+2.0
1,173,230	+				+0.1
1,173,242	+				+0.1
1,173,242	+				-0.8
1,173,242	+				-1.3
1,173,242	+				-0.9
1,173,242	+				-0.9
1,173,242	+				+1.4
1,173,243	-				+0.6
1,173,243	-				-0.7
1,173,243	-				-0.7
1,173,243	-				+0.2
1,173,243	-				-2.7
1,173,243	-				+0.1
1,173,243	-				+1.3
1,173,243	-				-1.9
1,173,243	-				-1.3
1,173,243	-				+0.5
1,173,264	+				-1.2
1,173,264	+				-1.4
1,173,264	+				+0.0
1,173,289	+				+0.6
1,173,289	+				-2.8
1,173,289	+				-1.2
1,173,289	+				-3.5
1,173,290	-				-0.1
1,173,303	+				-2.1
1,173,303	+				+0.7
1,173,303	+				-0.1
1,173,303	+				+0.9
1,173,304	-				+1.6
1,173,304	-				+1.8
1,173,304	-				+0.4
1,173,312	+				+0.8
1,173,312	+				+0.4
1,173,312	+				-0.4
1,173,313	-				+0.6
1,173,313	-				-0.0
1,173,313	-				-0.3
1,173,313	-				-0.4
1,173,338	+				-1.6
1,173,339	-				+0.6
1,173,367	-		EFB2_01122	0.11	-1.2
1,173,379	+		EFB2_01122	0.12	+0.4
1,173,379	+		EFB2_01122	0.12	+1.6
1,173,379	+		EFB2_01122	0.12	+0.2
1,173,379	+		EFB2_01122	0.12	-0.3
1,173,380	-		EFB2_01122	0.12	-1.4
1,173,380	-		EFB2_01122	0.12	-0.5
1,173,380	-		EFB2_01122	0.12	+0.5
1,173,380	-		EFB2_01122	0.12	-0.1
1,173,380	-		EFB2_01122	0.12	-1.6
1,173,380	-		EFB2_01122	0.12	+0.7
1,173,380	-		EFB2_01122	0.12	-2.1
1,173,466	-		EFB2_01122	0.18	+1.2
1,173,471	+		EFB2_01122	0.19	+1.3
1,173,471	+		EFB2_01122	0.19	-2.1
1,173,471	+		EFB2_01122	0.19	+0.3
1,173,472	-		EFB2_01122	0.19	-0.8
1,173,472	-		EFB2_01122	0.19	-1.5
1,173,472	-		EFB2_01122	0.19	+0.4
1,173,531	+		EFB2_01122	0.23	-0.2
1,173,531	+		EFB2_01122	0.23	-0.5
1,173,531	+		EFB2_01122	0.23	-0.1
1,173,531	+		EFB2_01122	0.23	-0.1
1,173,532	-		EFB2_01122	0.23	+1.0
1,173,532	-		EFB2_01122	0.23	-0.9
1,173,532	-		EFB2_01122	0.23	+0.5
1,173,532	-		EFB2_01122	0.23	-2.5
1,173,532	-		EFB2_01122	0.23	-0.6
1,173,532	-		EFB2_01122	0.23	-0.1
1,173,532	-		EFB2_01122	0.23	-0.9
1,173,540	-		EFB2_01122	0.24	-2.8
1,173,663	+		EFB2_01122	0.33	-0.6
1,173,663	+		EFB2_01122	0.33	+0.0
1,173,663	+		EFB2_01122	0.33	+0.9
1,173,663	+		EFB2_01122	0.33	+0.1
1,173,663	+		EFB2_01122	0.33	+0.0
1,173,663	+		EFB2_01122	0.33	+1.0
1,173,663	+		EFB2_01122	0.33	+0.3
1,173,663	+		EFB2_01122	0.33	+0.2
1,173,663	+		EFB2_01122	0.33	+0.5
1,173,664	-		EFB2_01122	0.33	+0.1
1,173,664	-		EFB2_01122	0.33	-0.7
1,173,664	-		EFB2_01122	0.33	-2.7
1,173,664	-		EFB2_01122	0.33	-0.3
1,173,664	-		EFB2_01122	0.33	-0.7
1,173,664	-		EFB2_01122	0.33	-0.1
1,173,664	-		EFB2_01122	0.33	-1.7
1,173,664	-		EFB2_01122	0.33	-1.1
1,173,664	-		EFB2_01122	0.33	+0.7
1,173,664	-		EFB2_01122	0.33	-0.9
1,173,664	-		EFB2_01122	0.33	+0.1
1,173,685	+		EFB2_01122	0.35	+0.2
1,173,686	-		EFB2_01122	0.35	+2.9
1,173,695	+		EFB2_01122	0.35	+0.4
1,173,696	-		EFB2_01122	0.35	-0.1
1,173,696	-		EFB2_01122	0.35	-0.0
1,173,733	+		EFB2_01122	0.38	-0.3
1,173,734	-		EFB2_01122	0.38	-2.7
1,173,734	-		EFB2_01122	0.38	-1.5
1,173,734	-		EFB2_01122	0.38	-1.2
1,173,779	+		EFB2_01122	0.41	-2.3
1,173,779	+		EFB2_01122	0.41	-2.2
1,173,779	+		EFB2_01122	0.41	+1.0
1,173,779	+		EFB2_01122	0.41	+0.7
1,173,819	+		EFB2_01122	0.44	+1.0
1,173,819	+		EFB2_01122	0.44	-0.3
1,173,819	+		EFB2_01122	0.44	+0.2
1,173,819	+		EFB2_01122	0.44	-1.3
1,173,819	+		EFB2_01122	0.44	-1.1
1,173,819	+		EFB2_01122	0.44	-0.1
1,173,819	+		EFB2_01122	0.44	+0.9
1,173,820	-		EFB2_01122	0.44	-0.5
1,173,820	-		EFB2_01122	0.44	-1.8
1,173,820	-		EFB2_01122	0.44	+1.8
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1,175,238	+		EFB2_01123	0.65	-1.0
1,175,252	+		EFB2_01123	0.66	-0.9
1,175,252	+		EFB2_01123	0.66	-1.9
1,175,253	-		EFB2_01123	0.66	-0.3
1,175,253	-		EFB2_01123	0.66	+0.1
1,175,253	-		EFB2_01123	0.66	-1.4
1,175,253	-		EFB2_01123	0.66	+0.6
1,175,253	-		EFB2_01123	0.66	-0.2
1,175,253	-		EFB2_01123	0.66	-0.5
1,175,259	+		EFB2_01123	0.67	+0.7
1,175,259	+		EFB2_01123	0.67	+0.0
1,175,259	+		EFB2_01123	0.67	+1.6
1,175,259	+		EFB2_01123	0.67	+2.2
1,175,260	-		EFB2_01123	0.67	-0.9
1,175,260	-		EFB2_01123	0.67	-1.0
1,175,260	-		EFB2_01123	0.67	-1.4
1,175,260	-		EFB2_01123	0.67	+0.3
1,175,260	-		EFB2_01123	0.67	-1.0
1,175,260	-		EFB2_01123	0.67	-0.3
1,175,284	+		EFB2_01123	0.70	+0.3
1,175,285	-		EFB2_01123	0.70	-2.1
1,175,285	-		EFB2_01123	0.70	+1.3
1,175,285	-		EFB2_01123	0.70	+0.5
1,175,285	-		EFB2_01123	0.70	+0.1
1,175,285	-		EFB2_01123	0.70	-1.0
1,175,294	+		EFB2_01123	0.71	+1.0
1,175,294	+		EFB2_01123	0.71	-2.1
1,175,294	+		EFB2_01123	0.71	-0.5
1,175,294	+		EFB2_01123	0.71	-1.1
1,175,294	+		EFB2_01123	0.71	-0.2
1,175,294	+		EFB2_01123	0.71	-0.9
1,175,294	+		EFB2_01123	0.71	-1.8
1,175,294	+		EFB2_01123	0.71	+1.1
1,175,294	+		EFB2_01123	0.71	+0.2
1,175,294	+		EFB2_01123	0.71	+1.0
1,175,295	-		EFB2_01123	0.71	-0.6
1,175,295	-		EFB2_01123	0.71	-0.9
1,175,360	+		EFB2_01123	0.79	+1.5
1,175,360	+		EFB2_01123	0.79	+0.1
1,175,360	+		EFB2_01123	0.79	-0.4
1,175,360	+		EFB2_01123	0.79	-2.4
1,175,360	+		EFB2_01123	0.79	+0.1
1,175,361	-		EFB2_01123	0.79	+0.8
1,175,361	-		EFB2_01123	0.79	-0.7
1,175,361	-		EFB2_01123	0.79	+1.5
1,175,361	-		EFB2_01123	0.79	+1.2
1,175,374	-		EFB2_01123	0.81	+0.2
1,175,465	+				-0.9
1,175,465	+				+0.2
1,175,466	-				+0.7
1,175,466	-				+1.6
1,175,466	-				-0.3
1,175,466	-				-1.9
1,175,466	-				-1.4
1,175,469	+				+1.4
1,175,469	+				-3.3
1,175,528	+				-2.3
1,175,528	+				-1.3
1,175,529	-				-0.6
1,175,552	-				-0.6
1,175,560	+				+0.8
1,175,565	+				+0.1
1,175,565	+				-1.3
1,175,565	+				+1.2
1,175,565	+				+0.2
1,175,566	-				+0.2
1,175,566	-				-1.3
1,175,566	-				-0.3
1,175,566	-				+1.4
1,175,566	-				+0.4
1,175,566	-				-2.4
1,175,566	-				-1.6
1,175,578	+				-1.6
1,175,578	+				+0.1
1,175,578	+				-0.9
1,175,578	+				-0.6
1,175,578	+				-2.4
1,175,578	+				+0.6
1,175,578	+				-0.1
1,175,578	+				-0.1
1,175,578	+				-1.6
1,175,578	+				-1.2