Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_05175

Experiment: Inulin from chicory 2.5 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_05173 and BACOVA_05174 are separated by 315 nucleotidesBACOVA_05174 and BACOVA_05175 overlap by 4 nucleotidesBACOVA_05175 and BACOVA_05176 are separated by 12 nucleotides BACOVA_05173: BACOVA_05173 - ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein, at 659,848 to 661,812 _05173 BACOVA_05174: BACOVA_05174 - RNA polymerase sigma-70 factor, at 662,128 to 662,703 _05174 BACOVA_05175: BACOVA_05175 - hypothetical protein, at 662,700 to 662,825 _05175 BACOVA_05176: BACOVA_05176 - sigma factor regulatory protein, FecR/PupR family, at 662,838 to 663,860 _05176 Position (kb) 662 663Strain fitness (log2 ratio) -2 -1 0 1 2at 661.810 kb on + strandat 661.839 kb on + strandat 661.840 kb on - strandat 661.843 kb on + strandat 661.844 kb on - strandat 661.844 kb on - strandat 661.851 kb on + strandat 661.852 kb on - strandat 661.852 kb on - strandat 661.859 kb on + strandat 661.870 kb on - strandat 661.887 kb on - strandat 661.953 kb on + strandat 661.955 kb on + strandat 661.955 kb on + strandat 661.997 kb on + strandat 662.040 kb on + strandat 662.040 kb on + strandat 662.056 kb on - strandat 662.067 kb on + strandat 662.071 kb on + strandat 662.089 kb on + strandat 662.089 kb on + strandat 662.096 kb on + strandat 662.097 kb on - strandat 662.100 kb on - strandat 662.111 kb on + strandat 662.112 kb on - strandat 662.147 kb on - strandat 662.152 kb on + strandat 662.162 kb on + strandat 662.162 kb on + strandat 662.182 kb on + strandat 662.182 kb on + strandat 662.182 kb on + strandat 662.230 kb on + strand, within BACOVA_05174at 662.256 kb on + strand, within BACOVA_05174at 662.258 kb on + strand, within BACOVA_05174at 662.259 kb on - strand, within BACOVA_05174at 662.360 kb on + strand, within BACOVA_05174at 662.378 kb on - strand, within BACOVA_05174at 662.434 kb on - strand, within BACOVA_05174at 662.463 kb on - strand, within BACOVA_05174at 662.488 kb on - strand, within BACOVA_05174at 662.488 kb on - strand, within BACOVA_05174at 662.610 kb on - strand, within BACOVA_05174at 662.665 kb on + strandat 662.669 kb on - strandat 662.706 kb on - strandat 662.708 kb on + strandat 662.716 kb on + strand, within BACOVA_05175at 662.730 kb on + strand, within BACOVA_05175at 662.730 kb on + strand, within BACOVA_05175at 662.811 kb on + strand, within BACOVA_05175at 662.817 kb on - strandat 662.817 kb on - strandat 662.817 kb on - strandat 662.817 kb on - strandat 662.838 kb on - strandat 662.844 kb on - strandat 662.974 kb on + strand, within BACOVA_05176at 662.974 kb on + strand, within BACOVA_05176at 662.975 kb on - strand, within BACOVA_05176at 662.986 kb on - strand, within BACOVA_05176at 663.000 kb on - strand, within BACOVA_05176at 663.000 kb on - strand, within BACOVA_05176at 663.068 kb on + strand, within BACOVA_05176at 663.155 kb on - strand, within BACOVA_05176at 663.286 kb on - strand, within BACOVA_05176at 663.339 kb on + strand, within BACOVA_05176at 663.376 kb on + strand, within BACOVA_05176at 663.376 kb on + strand, within BACOVA_05176at 663.377 kb on - strand, within BACOVA_05176at 663.377 kb on - strand, within BACOVA_05176at 663.383 kb on + strand, within BACOVA_05176at 663.383 kb on + strand, within BACOVA_05176at 663.439 kb on + strand, within BACOVA_05176at 663.484 kb on + strand, within BACOVA_05176at 663.552 kb on + strand, within BACOVA_05176at 663.552 kb on + strand, within BACOVA_05176at 663.552 kb on + strand, within BACOVA_05176at 663.553 kb on - strand, within BACOVA_05176at 663.558 kb on - strand, within BACOVA_05176at 663.559 kb on + strand, within BACOVA_05176at 663.559 kb on + strand, within BACOVA_05176at 663.560 kb on - strand, within BACOVA_05176at 663.560 kb on - strand, within BACOVA_05176at 663.570 kb on - strand, within BACOVA_05176at 663.583 kb on - strand, within BACOVA_05176at 663.583 kb on - strand, within BACOVA_05176at 663.683 kb on + strand, within BACOVA_05176at 663.683 kb on + strand, within BACOVA_05176at 663.683 kb on + strand, within BACOVA_05176at 663.684 kb on - strand, within BACOVA_05176at 663.698 kb on + strand, within BACOVA_05176at 663.764 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Inulin from chicory 2.5 mg/mL (C)
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661,810 + +0.1
661,839 + +0.0
661,840 - -0.1
661,843 + +0.0
661,844 - -1.6
661,844 - -0.9
661,851 + -0.2
661,852 - -1.2
661,852 - +1.1
661,859 + -0.6
661,870 - -2.1
661,887 - -2.1
661,953 + -0.2
661,955 + +0.3
661,955 + +1.2
661,997 + -0.8
662,040 + -0.6
662,040 + +1.5
662,056 - +0.5
662,067 + -0.2
662,071 + -0.9
662,089 + +1.1
662,089 + -1.0
662,096 + +0.1
662,097 - -0.1
662,100 - -1.3
662,111 + +0.4
662,112 - +0.4
662,147 - -0.3
662,152 + +0.6
662,162 + +0.1
662,162 + -0.3
662,182 + -0.3
662,182 + -0.4
662,182 + +1.5
662,230 + BACOVA_05174 0.18 -0.1
662,256 + BACOVA_05174 0.22 -0.2
662,258 + BACOVA_05174 0.23 -0.3
662,259 - BACOVA_05174 0.23 -0.4
662,360 + BACOVA_05174 0.40 -0.7
662,378 - BACOVA_05174 0.43 +0.8
662,434 - BACOVA_05174 0.53 +0.6
662,463 - BACOVA_05174 0.58 -0.1
662,488 - BACOVA_05174 0.62 +1.0
662,488 - BACOVA_05174 0.62 -0.2
662,610 - BACOVA_05174 0.84 +0.4
662,665 + +1.3
662,669 - -0.1
662,706 - -1.0
662,708 + +0.3
662,716 + BACOVA_05175 0.13 +0.1
662,730 + BACOVA_05175 0.24 +0.0
662,730 + BACOVA_05175 0.24 -2.3
662,811 + BACOVA_05175 0.88 -0.1
662,817 - -0.4
662,817 - -0.6
662,817 - -1.6
662,817 - -0.5
662,838 - +0.6
662,844 - -0.8
662,974 + BACOVA_05176 0.13 -0.2
662,974 + BACOVA_05176 0.13 -0.7
662,975 - BACOVA_05176 0.13 +0.3
662,986 - BACOVA_05176 0.14 +1.1
663,000 - BACOVA_05176 0.16 -0.2
663,000 - BACOVA_05176 0.16 +0.6
663,068 + BACOVA_05176 0.22 -1.1
663,155 - BACOVA_05176 0.31 +0.1
663,286 - BACOVA_05176 0.44 -0.8
663,339 + BACOVA_05176 0.49 +0.5
663,376 + BACOVA_05176 0.53 -0.2
663,376 + BACOVA_05176 0.53 +1.1
663,377 - BACOVA_05176 0.53 +0.1
663,377 - BACOVA_05176 0.53 -0.1
663,383 + BACOVA_05176 0.53 +0.6
663,383 + BACOVA_05176 0.53 -0.6
663,439 + BACOVA_05176 0.59 -0.7
663,484 + BACOVA_05176 0.63 -2.6
663,552 + BACOVA_05176 0.70 -1.0
663,552 + BACOVA_05176 0.70 +0.8
663,552 + BACOVA_05176 0.70 -0.8
663,553 - BACOVA_05176 0.70 +0.5
663,558 - BACOVA_05176 0.70 +0.6
663,559 + BACOVA_05176 0.70 -0.5
663,559 + BACOVA_05176 0.70 -0.4
663,560 - BACOVA_05176 0.71 +0.1
663,560 - BACOVA_05176 0.71 +0.3
663,570 - BACOVA_05176 0.72 +2.0
663,583 - BACOVA_05176 0.73 -0.7
663,583 - BACOVA_05176 0.73 -0.1
663,683 + BACOVA_05176 0.83 -1.0
663,683 + BACOVA_05176 0.83 -0.4
663,683 + BACOVA_05176 0.83 -0.6
663,684 - BACOVA_05176 0.83 +0.4
663,698 + BACOVA_05176 0.84 +0.3
663,764 + -0.6

Or see this region's nucleotide sequence