Experiment: Inulin from chicory 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_04438 and BACOVA_04439 are separated by 193 nucleotides BACOVA_04439 and BACOVA_04440 are separated by 218 nucleotides BACOVA_04440 and BACOVA_04441 are separated by 29 nucleotides BACOVA_04441 and BACOVA_04442 are separated by 122 nucleotides BACOVA_04442 and BACOVA_04443 overlap by 17 nucleotides
BACOVA_04438: BACOVA_04438 - hypothetical protein, at 354,241 to 355,455
_04438
BACOVA_04439: BACOVA_04439 - hypothetical protein, at 355,649 to 356,056
_04439
BACOVA_04440: BACOVA_04440 - hypothetical protein, at 356,275 to 356,379
_04440
BACOVA_04441: BACOVA_04441 - hypothetical protein, at 356,409 to 356,522
_04441
BACOVA_04442: BACOVA_04442 - hypothetical protein, at 356,645 to 356,806
_04442
BACOVA_04443: BACOVA_04443 - hypothetical protein, at 356,790 to 357,221
_04443
Position (kb) 355
356
357 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 354.651 kb on + strand, within BACOVA_04438 at 354.663 kb on + strand, within BACOVA_04438 at 354.664 kb on - strand, within BACOVA_04438 at 354.689 kb on + strand, within BACOVA_04438 at 354.690 kb on - strand, within BACOVA_04438 at 354.693 kb on + strand, within BACOVA_04438 at 354.694 kb on - strand, within BACOVA_04438 at 354.694 kb on - strand, within BACOVA_04438 at 354.695 kb on + strand, within BACOVA_04438 at 354.696 kb on - strand, within BACOVA_04438 at 354.696 kb on - strand, within BACOVA_04438 at 354.696 kb on - strand, within BACOVA_04438 at 354.696 kb on - strand, within BACOVA_04438 at 354.709 kb on - strand, within BACOVA_04438 at 354.738 kb on - strand, within BACOVA_04438 at 354.738 kb on - strand, within BACOVA_04438 at 354.765 kb on + strand, within BACOVA_04438 at 354.772 kb on + strand, within BACOVA_04438 at 354.773 kb on - strand, within BACOVA_04438 at 354.773 kb on - strand, within BACOVA_04438 at 354.774 kb on + strand, within BACOVA_04438 at 354.775 kb on - strand, within BACOVA_04438 at 354.866 kb on + strand, within BACOVA_04438 at 354.867 kb on - strand, within BACOVA_04438 at 354.885 kb on + strand, within BACOVA_04438 at 354.886 kb on - strand, within BACOVA_04438 at 354.887 kb on + strand, within BACOVA_04438 at 354.915 kb on + strand, within BACOVA_04438 at 354.915 kb on + strand, within BACOVA_04438 at 354.916 kb on - strand, within BACOVA_04438 at 354.919 kb on + strand, within BACOVA_04438 at 354.919 kb on + strand, within BACOVA_04438 at 354.919 kb on + strand, within BACOVA_04438 at 354.947 kb on + strand, within BACOVA_04438 at 354.947 kb on + strand, within BACOVA_04438 at 355.014 kb on - strand, within BACOVA_04438 at 355.014 kb on - strand, within BACOVA_04438 at 355.053 kb on - strand, within BACOVA_04438 at 355.092 kb on + strand, within BACOVA_04438 at 355.115 kb on + strand, within BACOVA_04438 at 355.115 kb on + strand, within BACOVA_04438 at 355.116 kb on - strand, within BACOVA_04438 at 355.120 kb on - strand, within BACOVA_04438 at 355.197 kb on + strand, within BACOVA_04438 at 355.200 kb on - strand, within BACOVA_04438 at 355.200 kb on - strand, within BACOVA_04438 at 355.200 kb on - strand, within BACOVA_04438 at 355.203 kb on - strand, within BACOVA_04438 at 355.236 kb on - strand, within BACOVA_04438 at 355.236 kb on - strand, within BACOVA_04438 at 355.236 kb on - strand, within BACOVA_04438 at 355.241 kb on + strand, within BACOVA_04438 at 355.241 kb on + strand, within BACOVA_04438 at 355.241 kb on + strand, within BACOVA_04438 at 355.242 kb on - strand, within BACOVA_04438 at 355.303 kb on - strand, within BACOVA_04438 at 355.435 kb on - strand at 355.436 kb on + strand at 355.436 kb on + strand at 355.436 kb on + strand at 355.613 kb on + strand at 355.694 kb on - strand, within BACOVA_04439 at 355.723 kb on + strand, within BACOVA_04439 at 355.874 kb on + strand, within BACOVA_04439 at 355.874 kb on + strand, within BACOVA_04439 at 355.874 kb on + strand, within BACOVA_04439 at 355.874 kb on + strand, within BACOVA_04439 at 355.874 kb on + strand, within BACOVA_04439 at 355.874 kb on + strand, within BACOVA_04439 at 355.874 kb on + strand, within BACOVA_04439 at 355.875 kb on - strand, within BACOVA_04439 at 355.875 kb on - strand, within BACOVA_04439 at 355.875 kb on - strand, within BACOVA_04439 at 355.875 kb on - strand, within BACOVA_04439 at 355.875 kb on - strand, within BACOVA_04439 at 355.890 kb on - strand, within BACOVA_04439 at 355.937 kb on + strand, within BACOVA_04439 at 355.937 kb on + strand, within BACOVA_04439 at 355.938 kb on - strand, within BACOVA_04439 at 355.938 kb on - strand, within BACOVA_04439 at 355.978 kb on - strand, within BACOVA_04439 at 355.981 kb on + strand, within BACOVA_04439 at 355.981 kb on + strand, within BACOVA_04439 at 355.981 kb on + strand, within BACOVA_04439 at 355.981 kb on + strand, within BACOVA_04439 at 356.020 kb on + strand at 356.020 kb on + strand at 356.081 kb on + strand at 356.082 kb on - strand at 356.182 kb on - strand at 356.185 kb on + strand at 356.196 kb on + strand at 356.197 kb on - strand at 356.199 kb on + strand at 356.231 kb on - strand at 356.264 kb on - strand at 356.276 kb on + strand at 356.284 kb on - strand at 356.284 kb on - strand at 356.284 kb on - strand at 356.298 kb on + strand, within BACOVA_04440 at 356.304 kb on - strand, within BACOVA_04440 at 356.304 kb on - strand, within BACOVA_04440 at 356.336 kb on - strand, within BACOVA_04440 at 356.354 kb on - strand, within BACOVA_04440 at 356.425 kb on + strand, within BACOVA_04441 at 356.434 kb on + strand, within BACOVA_04441 at 356.434 kb on + strand, within BACOVA_04441 at 356.435 kb on - strand, within BACOVA_04441 at 356.484 kb on + strand, within BACOVA_04441 at 356.484 kb on + strand, within BACOVA_04441 at 356.485 kb on - strand, within BACOVA_04441 at 356.507 kb on - strand, within BACOVA_04441 at 356.507 kb on - strand, within BACOVA_04441 at 356.513 kb on - strand at 356.530 kb on - strand at 356.540 kb on + strand at 356.541 kb on - strand at 356.542 kb on + strand at 356.544 kb on + strand at 356.545 kb on - strand at 356.546 kb on + strand at 356.575 kb on - strand at 356.580 kb on + strand at 356.581 kb on - strand at 356.601 kb on - strand at 356.614 kb on - strand at 356.623 kb on + strand at 356.649 kb on - strand at 356.707 kb on + strand, within BACOVA_04442 at 356.744 kb on + strand, within BACOVA_04442 at 356.744 kb on + strand, within BACOVA_04442 at 356.745 kb on - strand, within BACOVA_04442 at 356.750 kb on - strand, within BACOVA_04442 at 356.750 kb on - strand, within BACOVA_04442 at 356.750 kb on - strand, within BACOVA_04442 at 356.750 kb on - strand, within BACOVA_04442 at 356.753 kb on + strand, within BACOVA_04442 at 356.789 kb on + strand, within BACOVA_04442 at 356.830 kb on - strand at 356.882 kb on + strand, within BACOVA_04443 at 356.883 kb on - strand, within BACOVA_04443 at 356.888 kb on - strand, within BACOVA_04443 at 356.889 kb on + strand, within BACOVA_04443 at 356.890 kb on - strand, within BACOVA_04443 at 356.890 kb on - strand, within BACOVA_04443 at 356.894 kb on - strand, within BACOVA_04443 at 356.925 kb on - strand, within BACOVA_04443 at 356.960 kb on + strand, within BACOVA_04443 at 356.971 kb on - strand, within BACOVA_04443 at 356.972 kb on + strand, within BACOVA_04443 at 356.978 kb on + strand, within BACOVA_04443 at 356.998 kb on + strand, within BACOVA_04443 at 356.998 kb on + strand, within BACOVA_04443 at 357.024 kb on + strand, within BACOVA_04443 at 357.024 kb on + strand, within BACOVA_04443 at 357.025 kb on - strand, within BACOVA_04443 at 357.035 kb on + strand, within BACOVA_04443 at 357.035 kb on + strand, within BACOVA_04443
Per-strain Table
Position Strand Gene LocusTag Fraction Inulin from chicory 2.5 mg/mL (C) remove 354,651 + BACOVA_04438 0.34 -0.8 354,663 + BACOVA_04438 0.35 +0.3 354,664 - BACOVA_04438 0.35 +0.2 354,689 + BACOVA_04438 0.37 +0.1 354,690 - BACOVA_04438 0.37 +1.0 354,693 + BACOVA_04438 0.37 -0.8 354,694 - BACOVA_04438 0.37 -0.3 354,694 - BACOVA_04438 0.37 -0.7 354,695 + BACOVA_04438 0.37 -1.5 354,696 - BACOVA_04438 0.37 -0.3 354,696 - BACOVA_04438 0.37 +0.6 354,696 - BACOVA_04438 0.37 +1.3 354,696 - BACOVA_04438 0.37 -0.6 354,709 - BACOVA_04438 0.39 +0.5 354,738 - BACOVA_04438 0.41 -0.9 354,738 - BACOVA_04438 0.41 -0.9 354,765 + BACOVA_04438 0.43 +0.5 354,772 + BACOVA_04438 0.44 +0.8 354,773 - BACOVA_04438 0.44 -0.5 354,773 - BACOVA_04438 0.44 -0.7 354,774 + BACOVA_04438 0.44 -0.8 354,775 - BACOVA_04438 0.44 -0.1 354,866 + BACOVA_04438 0.51 +0.5 354,867 - BACOVA_04438 0.52 +0.5 354,885 + BACOVA_04438 0.53 +0.3 354,886 - BACOVA_04438 0.53 +0.3 354,887 + BACOVA_04438 0.53 -0.2 354,915 + BACOVA_04438 0.55 -0.3 354,915 + BACOVA_04438 0.55 -1.2 354,916 - BACOVA_04438 0.56 -0.4 354,919 + BACOVA_04438 0.56 -0.3 354,919 + BACOVA_04438 0.56 +0.2 354,919 + BACOVA_04438 0.56 +1.1 354,947 + BACOVA_04438 0.58 -1.3 354,947 + BACOVA_04438 0.58 -0.9 355,014 - BACOVA_04438 0.64 +0.7 355,014 - BACOVA_04438 0.64 +0.2 355,053 - BACOVA_04438 0.67 -0.3 355,092 + BACOVA_04438 0.70 +0.2 355,115 + BACOVA_04438 0.72 +0.6 355,115 + BACOVA_04438 0.72 -0.7 355,116 - BACOVA_04438 0.72 +0.5 355,120 - BACOVA_04438 0.72 -0.3 355,197 + BACOVA_04438 0.79 -0.6 355,200 - BACOVA_04438 0.79 -1.0 355,200 - BACOVA_04438 0.79 +0.2 355,200 - BACOVA_04438 0.79 -1.7 355,203 - BACOVA_04438 0.79 -0.7 355,236 - BACOVA_04438 0.82 -1.0 355,236 - BACOVA_04438 0.82 +0.2 355,236 - BACOVA_04438 0.82 -0.5 355,241 + BACOVA_04438 0.82 +0.6 355,241 + BACOVA_04438 0.82 -0.6 355,241 + BACOVA_04438 0.82 -1.2 355,242 - BACOVA_04438 0.82 -0.3 355,303 - BACOVA_04438 0.87 -1.2 355,435 - -1.0 355,436 + +0.6 355,436 + -0.9 355,436 + -0.5 355,613 + +0.0 355,694 - BACOVA_04439 0.11 +0.3 355,723 + BACOVA_04439 0.18 +0.4 355,874 + BACOVA_04439 0.55 -0.3 355,874 + BACOVA_04439 0.55 -0.0 355,874 + BACOVA_04439 0.55 +0.4 355,874 + BACOVA_04439 0.55 -0.6 355,874 + BACOVA_04439 0.55 +1.0 355,874 + BACOVA_04439 0.55 -0.0 355,874 + BACOVA_04439 0.55 +0.3 355,875 - BACOVA_04439 0.55 +0.7 355,875 - BACOVA_04439 0.55 -0.6 355,875 - BACOVA_04439 0.55 +1.5 355,875 - BACOVA_04439 0.55 -1.3 355,875 - BACOVA_04439 0.55 +0.5 355,890 - BACOVA_04439 0.59 -0.5 355,937 + BACOVA_04439 0.71 +0.5 355,937 + BACOVA_04439 0.71 +0.3 355,938 - BACOVA_04439 0.71 -1.4 355,938 - BACOVA_04439 0.71 -0.7 355,978 - BACOVA_04439 0.81 -0.4 355,981 + BACOVA_04439 0.81 +0.2 355,981 + BACOVA_04439 0.81 +0.7 355,981 + BACOVA_04439 0.81 +0.9 355,981 + BACOVA_04439 0.81 -0.4 356,020 + +0.7 356,020 + +0.6 356,081 + +1.4 356,082 - +1.1 356,182 - +3.5 356,185 + -1.2 356,196 + -0.6 356,197 - +1.5 356,199 + +0.2 356,231 - +0.7 356,264 - +1.5 356,276 + -0.3 356,284 - +1.1 356,284 - -1.8 356,284 - +0.7 356,298 + BACOVA_04440 0.22 +0.2 356,304 - BACOVA_04440 0.28 -0.0 356,304 - BACOVA_04440 0.28 -0.9 356,336 - BACOVA_04440 0.58 +0.5 356,354 - BACOVA_04440 0.75 -0.7 356,425 + BACOVA_04441 0.14 -0.1 356,434 + BACOVA_04441 0.22 -0.1 356,434 + BACOVA_04441 0.22 +0.1 356,435 - BACOVA_04441 0.23 -0.7 356,484 + BACOVA_04441 0.66 +1.1 356,484 + BACOVA_04441 0.66 +0.1 356,485 - BACOVA_04441 0.67 +0.4 356,507 - BACOVA_04441 0.86 +0.7 356,507 - BACOVA_04441 0.86 -0.0 356,513 - -0.6 356,530 - -1.2 356,540 + -0.5 356,541 - +0.0 356,542 + -1.4 356,544 + +0.0 356,545 - -0.4 356,546 + -1.1 356,575 - +0.9 356,580 + -1.5 356,581 - -0.5 356,601 - -1.1 356,614 - -1.5 356,623 + +0.9 356,649 - +0.2 356,707 + BACOVA_04442 0.38 +0.1 356,744 + BACOVA_04442 0.61 -0.0 356,744 + BACOVA_04442 0.61 -1.5 356,745 - BACOVA_04442 0.62 +0.6 356,750 - BACOVA_04442 0.65 -0.1 356,750 - BACOVA_04442 0.65 +0.5 356,750 - BACOVA_04442 0.65 +1.2 356,750 - BACOVA_04442 0.65 -1.3 356,753 + BACOVA_04442 0.67 +1.0 356,789 + BACOVA_04442 0.89 -1.5 356,830 - -0.0 356,882 + BACOVA_04443 0.21 -0.4 356,883 - BACOVA_04443 0.22 +3.0 356,888 - BACOVA_04443 0.23 -1.0 356,889 + BACOVA_04443 0.23 +1.4 356,890 - BACOVA_04443 0.23 +0.3 356,890 - BACOVA_04443 0.23 -1.7 356,894 - BACOVA_04443 0.24 -0.2 356,925 - BACOVA_04443 0.31 +0.6 356,960 + BACOVA_04443 0.39 +0.3 356,971 - BACOVA_04443 0.42 +0.2 356,972 + BACOVA_04443 0.42 -0.1 356,978 + BACOVA_04443 0.44 +0.6 356,998 + BACOVA_04443 0.48 +0.2 356,998 + BACOVA_04443 0.48 -0.1 357,024 + BACOVA_04443 0.54 +0.7 357,024 + BACOVA_04443 0.54 +0.3 357,025 - BACOVA_04443 0.54 -0.0 357,035 + BACOVA_04443 0.57 +0.0 357,035 + BACOVA_04443 0.57 -0.1
Or see this region's nucleotide sequence