Experiment: Inulin from chicory 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00831 and BACOVA_00832 are separated by 162 nucleotides BACOVA_00832 and BACOVA_00833 overlap by 4 nucleotides BACOVA_00833 and BACOVA_00834 are separated by 87 nucleotides BACOVA_00834 and BACOVA_00835 are separated by 72 nucleotides
BACOVA_00831: BACOVA_00831 - cytochrome c nitrate reductase, small subunit, at 82,589 to 83,188
_00831
BACOVA_00832: BACOVA_00832 - hypothetical protein, at 83,351 to 83,842
_00832
BACOVA_00833: BACOVA_00833 - TonB-dependent receptor, at 83,839 to 85,998
_00833
BACOVA_00834: BACOVA_00834 - hypothetical protein, at 86,086 to 86,400
_00834
BACOVA_00835: BACOVA_00835 - hypothetical protein, at 86,473 to 87,429
_00835
Position (kb) 83
84
85
86 Strain fitness (log2 ratio) -2
-1
0
1
2 at 82.877 kb on - strand, within BACOVA_00831 at 82.900 kb on + strand, within BACOVA_00831 at 82.915 kb on + strand, within BACOVA_00831 at 82.990 kb on + strand, within BACOVA_00831 at 83.008 kb on - strand, within BACOVA_00831 at 83.008 kb on - strand, within BACOVA_00831 at 83.008 kb on - strand, within BACOVA_00831 at 83.011 kb on - strand, within BACOVA_00831 at 83.062 kb on - strand, within BACOVA_00831 at 83.065 kb on + strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.066 kb on - strand, within BACOVA_00831 at 83.080 kb on + strand, within BACOVA_00831 at 83.081 kb on - strand, within BACOVA_00831 at 83.082 kb on + strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.083 kb on - strand, within BACOVA_00831 at 83.086 kb on + strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.087 kb on - strand, within BACOVA_00831 at 83.146 kb on + strand at 83.148 kb on + strand at 83.189 kb on - strand at 83.213 kb on + strand at 83.241 kb on + strand at 83.241 kb on + strand at 83.242 kb on - strand at 83.242 kb on - strand at 83.242 kb on - strand at 83.246 kb on - strand at 83.276 kb on + strand at 83.281 kb on - strand at 83.344 kb on + strand at 83.352 kb on + strand at 83.389 kb on + strand at 83.416 kb on - strand, within BACOVA_00832 at 83.489 kb on + strand, within BACOVA_00832 at 83.489 kb on + strand, within BACOVA_00832 at 83.490 kb on - strand, within BACOVA_00832 at 83.490 kb on - strand, within BACOVA_00832 at 83.509 kb on + strand, within BACOVA_00832 at 83.510 kb on - strand, within BACOVA_00832 at 83.510 kb on - strand, within BACOVA_00832 at 83.510 kb on - strand, within BACOVA_00832 at 83.538 kb on + strand, within BACOVA_00832 at 83.538 kb on + strand, within BACOVA_00832 at 83.539 kb on - strand, within BACOVA_00832 at 83.539 kb on - strand, within BACOVA_00832 at 83.585 kb on - strand, within BACOVA_00832 at 83.588 kb on - strand, within BACOVA_00832 at 83.617 kb on + strand, within BACOVA_00832 at 83.618 kb on - strand, within BACOVA_00832 at 83.618 kb on - strand, within BACOVA_00832 at 83.794 kb on + strand at 83.795 kb on - strand at 83.795 kb on - strand at 83.873 kb on - strand at 83.886 kb on + strand at 83.886 kb on + strand at 83.887 kb on - strand at 83.937 kb on - strand at 83.954 kb on - strand at 83.954 kb on - strand at 84.006 kb on + strand at 84.073 kb on - strand, within BACOVA_00833 at 84.111 kb on + strand, within BACOVA_00833 at 84.111 kb on + strand, within BACOVA_00833 at 84.112 kb on - strand, within BACOVA_00833 at 84.112 kb on - strand, within BACOVA_00833 at 84.133 kb on + strand, within BACOVA_00833 at 84.134 kb on - strand, within BACOVA_00833 at 84.138 kb on + strand, within BACOVA_00833 at 84.138 kb on + strand, within BACOVA_00833 at 84.139 kb on - strand, within BACOVA_00833 at 84.194 kb on + strand, within BACOVA_00833 at 84.200 kb on + strand, within BACOVA_00833 at 84.201 kb on - strand, within BACOVA_00833 at 84.207 kb on - strand, within BACOVA_00833 at 84.253 kb on + strand, within BACOVA_00833 at 84.253 kb on + strand, within BACOVA_00833 at 84.254 kb on - strand, within BACOVA_00833 at 84.259 kb on - strand, within BACOVA_00833 at 84.277 kb on + strand, within BACOVA_00833 at 84.277 kb on + strand, within BACOVA_00833 at 84.296 kb on + strand, within BACOVA_00833 at 84.302 kb on + strand, within BACOVA_00833 at 84.422 kb on + strand, within BACOVA_00833 at 84.423 kb on - strand, within BACOVA_00833 at 84.499 kb on + strand, within BACOVA_00833 at 84.500 kb on - strand, within BACOVA_00833 at 84.563 kb on - strand, within BACOVA_00833 at 84.620 kb on + strand, within BACOVA_00833 at 84.707 kb on + strand, within BACOVA_00833 at 84.708 kb on - strand, within BACOVA_00833 at 84.708 kb on - strand, within BACOVA_00833 at 84.712 kb on - strand, within BACOVA_00833 at 84.730 kb on - strand, within BACOVA_00833 at 84.735 kb on + strand, within BACOVA_00833 at 84.750 kb on - strand, within BACOVA_00833 at 84.791 kb on + strand, within BACOVA_00833 at 84.791 kb on + strand, within BACOVA_00833 at 84.791 kb on + strand, within BACOVA_00833 at 84.895 kb on + strand, within BACOVA_00833 at 84.896 kb on - strand, within BACOVA_00833 at 84.897 kb on + strand, within BACOVA_00833 at 84.898 kb on - strand, within BACOVA_00833 at 85.010 kb on + strand, within BACOVA_00833 at 85.060 kb on + strand, within BACOVA_00833 at 85.094 kb on + strand, within BACOVA_00833 at 85.094 kb on + strand, within BACOVA_00833 at 85.094 kb on + strand, within BACOVA_00833 at 85.094 kb on + strand, within BACOVA_00833 at 85.094 kb on + strand, within BACOVA_00833 at 85.095 kb on - strand, within BACOVA_00833 at 85.095 kb on - strand, within BACOVA_00833 at 85.095 kb on - strand, within BACOVA_00833 at 85.117 kb on - strand, within BACOVA_00833 at 85.230 kb on - strand, within BACOVA_00833 at 85.231 kb on + strand, within BACOVA_00833 at 85.231 kb on + strand, within BACOVA_00833 at 85.232 kb on - strand, within BACOVA_00833 at 85.236 kb on + strand, within BACOVA_00833 at 85.237 kb on - strand, within BACOVA_00833 at 85.237 kb on - strand, within BACOVA_00833 at 85.237 kb on - strand, within BACOVA_00833 at 85.247 kb on + strand, within BACOVA_00833 at 85.248 kb on - strand, within BACOVA_00833 at 85.251 kb on + strand, within BACOVA_00833 at 85.258 kb on - strand, within BACOVA_00833 at 85.259 kb on + strand, within BACOVA_00833 at 85.259 kb on + strand, within BACOVA_00833 at 85.260 kb on - strand, within BACOVA_00833 at 85.260 kb on - strand, within BACOVA_00833 at 85.274 kb on + strand, within BACOVA_00833 at 85.326 kb on + strand, within BACOVA_00833 at 85.334 kb on + strand, within BACOVA_00833 at 85.335 kb on - strand, within BACOVA_00833 at 85.335 kb on - strand, within BACOVA_00833 at 85.335 kb on - strand, within BACOVA_00833 at 85.335 kb on - strand, within BACOVA_00833 at 85.335 kb on - strand, within BACOVA_00833 at 85.366 kb on - strand, within BACOVA_00833 at 85.485 kb on + strand, within BACOVA_00833 at 85.518 kb on + strand, within BACOVA_00833 at 85.603 kb on + strand, within BACOVA_00833 at 85.639 kb on + strand, within BACOVA_00833 at 85.640 kb on - strand, within BACOVA_00833 at 85.765 kb on + strand, within BACOVA_00833 at 85.880 kb on + strand at 85.880 kb on + strand at 85.881 kb on - strand at 85.881 kb on - strand at 85.958 kb on - strand at 85.958 kb on - strand at 85.963 kb on + strand at 85.964 kb on - strand at 86.017 kb on + strand at 86.059 kb on - strand at 86.059 kb on - strand at 86.074 kb on - strand at 86.079 kb on + strand at 86.079 kb on + strand at 86.079 kb on + strand at 86.084 kb on - strand at 86.084 kb on - strand at 86.084 kb on - strand at 86.084 kb on - strand at 86.108 kb on - strand at 86.151 kb on - strand, within BACOVA_00834 at 86.215 kb on - strand, within BACOVA_00834 at 86.231 kb on + strand, within BACOVA_00834 at 86.232 kb on - strand, within BACOVA_00834 at 86.313 kb on - strand, within BACOVA_00834 at 86.330 kb on - strand, within BACOVA_00834 at 86.356 kb on + strand, within BACOVA_00834 at 86.356 kb on + strand, within BACOVA_00834 at 86.369 kb on - strand at 86.370 kb on + strand at 86.371 kb on - strand at 86.371 kb on - strand at 86.371 kb on - strand at 86.373 kb on - strand at 86.373 kb on - strand at 86.373 kb on - strand at 86.373 kb on - strand at 86.373 kb on - strand at 86.373 kb on - strand at 86.374 kb on + strand at 86.374 kb on + strand at 86.374 kb on + strand at 86.374 kb on + strand at 86.420 kb on - strand at 86.436 kb on + strand at 86.438 kb on + strand at 86.439 kb on - strand at 86.439 kb on - strand at 86.439 kb on - strand at 86.445 kb on - strand at 86.466 kb on - strand at 86.475 kb on - strand at 86.475 kb on - strand at 86.475 kb on - strand at 86.493 kb on + strand at 86.510 kb on - strand at 86.535 kb on - strand at 86.556 kb on + strand at 86.562 kb on + strand at 86.642 kb on + strand, within BACOVA_00835 at 86.643 kb on - strand, within BACOVA_00835 at 86.643 kb on - strand, within BACOVA_00835 at 86.678 kb on + strand, within BACOVA_00835 at 86.679 kb on - strand, within BACOVA_00835 at 86.710 kb on - strand, within BACOVA_00835 at 86.721 kb on + strand, within BACOVA_00835 at 86.782 kb on + strand, within BACOVA_00835 at 86.783 kb on - strand, within BACOVA_00835 at 86.783 kb on - strand, within BACOVA_00835 at 86.790 kb on + strand, within BACOVA_00835 at 86.791 kb on - strand, within BACOVA_00835 at 86.791 kb on - strand, within BACOVA_00835 at 86.791 kb on - strand, within BACOVA_00835 at 86.791 kb on - strand, within BACOVA_00835 at 86.818 kb on + strand, within BACOVA_00835 at 86.823 kb on + strand, within BACOVA_00835 at 86.824 kb on - strand, within BACOVA_00835 at 86.847 kb on + strand, within BACOVA_00835 at 86.861 kb on + strand, within BACOVA_00835 at 86.891 kb on + strand, within BACOVA_00835 at 86.916 kb on + strand, within BACOVA_00835 at 86.916 kb on + strand, within BACOVA_00835 at 86.916 kb on + strand, within BACOVA_00835 at 86.917 kb on - strand, within BACOVA_00835 at 86.974 kb on - strand, within BACOVA_00835
Per-strain Table
Position Strand Gene LocusTag Fraction Inulin from chicory 2.5 mg/mL (C) remove 82,877 - BACOVA_00831 0.48 -0.3 82,900 + BACOVA_00831 0.52 -0.1 82,915 + BACOVA_00831 0.54 -0.3 82,990 + BACOVA_00831 0.67 +0.1 83,008 - BACOVA_00831 0.70 -1.7 83,008 - BACOVA_00831 0.70 +1.1 83,008 - BACOVA_00831 0.70 -0.2 83,011 - BACOVA_00831 0.70 -1.7 83,062 - BACOVA_00831 0.79 -0.2 83,065 + BACOVA_00831 0.79 +1.8 83,066 - BACOVA_00831 0.80 +2.3 83,066 - BACOVA_00831 0.80 -0.3 83,066 - BACOVA_00831 0.80 -1.2 83,066 - BACOVA_00831 0.80 +0.1 83,080 + BACOVA_00831 0.82 -1.0 83,081 - BACOVA_00831 0.82 +1.3 83,082 + BACOVA_00831 0.82 +0.5 83,083 - BACOVA_00831 0.82 +1.5 83,083 - BACOVA_00831 0.82 +0.6 83,083 - BACOVA_00831 0.82 +0.0 83,083 - BACOVA_00831 0.82 +0.7 83,086 + BACOVA_00831 0.83 +0.1 83,087 - BACOVA_00831 0.83 +0.8 83,087 - BACOVA_00831 0.83 +0.6 83,087 - BACOVA_00831 0.83 -0.5 83,087 - BACOVA_00831 0.83 +0.1 83,146 + +0.9 83,148 + -1.3 83,189 - -0.8 83,213 + +0.6 83,241 + -0.1 83,241 + -0.9 83,242 - +1.7 83,242 - -0.4 83,242 - -0.6 83,246 - -0.2 83,276 + +1.2 83,281 - +0.7 83,344 + +0.1 83,352 + -0.9 83,389 + -0.2 83,416 - BACOVA_00832 0.13 -1.4 83,489 + BACOVA_00832 0.28 +0.8 83,489 + BACOVA_00832 0.28 -0.2 83,490 - BACOVA_00832 0.28 -0.4 83,490 - BACOVA_00832 0.28 -0.4 83,509 + BACOVA_00832 0.32 -2.4 83,510 - BACOVA_00832 0.32 +0.9 83,510 - BACOVA_00832 0.32 +0.6 83,510 - BACOVA_00832 0.32 -0.3 83,538 + BACOVA_00832 0.38 +0.3 83,538 + BACOVA_00832 0.38 -1.1 83,539 - BACOVA_00832 0.38 +0.7 83,539 - BACOVA_00832 0.38 -0.2 83,585 - BACOVA_00832 0.48 -0.6 83,588 - BACOVA_00832 0.48 +0.2 83,617 + BACOVA_00832 0.54 -1.5 83,618 - BACOVA_00832 0.54 -1.7 83,618 - BACOVA_00832 0.54 -1.0 83,794 + +0.5 83,795 - -1.9 83,795 - -1.2 83,873 - +1.3 83,886 + +0.1 83,886 + -1.1 83,887 - +0.6 83,937 - -0.6 83,954 - -1.1 83,954 - -0.2 84,006 + -0.6 84,073 - BACOVA_00833 0.11 -0.7 84,111 + BACOVA_00833 0.13 +2.6 84,111 + BACOVA_00833 0.13 +1.7 84,112 - BACOVA_00833 0.13 -0.8 84,112 - BACOVA_00833 0.13 -0.6 84,133 + BACOVA_00833 0.14 -0.9 84,134 - BACOVA_00833 0.14 +0.3 84,138 + BACOVA_00833 0.14 +0.3 84,138 + BACOVA_00833 0.14 +0.9 84,139 - BACOVA_00833 0.14 -1.3 84,194 + BACOVA_00833 0.16 -0.2 84,200 + BACOVA_00833 0.17 -0.1 84,201 - BACOVA_00833 0.17 +0.0 84,207 - BACOVA_00833 0.17 +1.4 84,253 + BACOVA_00833 0.19 +0.7 84,253 + BACOVA_00833 0.19 -0.3 84,254 - BACOVA_00833 0.19 +0.1 84,259 - BACOVA_00833 0.19 +0.0 84,277 + BACOVA_00833 0.20 +0.4 84,277 + BACOVA_00833 0.20 -0.6 84,296 + BACOVA_00833 0.21 +0.1 84,302 + BACOVA_00833 0.21 -1.1 84,422 + BACOVA_00833 0.27 -0.4 84,423 - BACOVA_00833 0.27 -0.1 84,499 + BACOVA_00833 0.31 -1.3 84,500 - BACOVA_00833 0.31 -2.0 84,563 - BACOVA_00833 0.34 -0.9 84,620 + BACOVA_00833 0.36 +0.3 84,707 + BACOVA_00833 0.40 +0.0 84,708 - BACOVA_00833 0.40 -1.0 84,708 - BACOVA_00833 0.40 -0.3 84,712 - BACOVA_00833 0.40 -0.6 84,730 - BACOVA_00833 0.41 -0.3 84,735 + BACOVA_00833 0.41 +0.6 84,750 - BACOVA_00833 0.42 -0.6 84,791 + BACOVA_00833 0.44 -1.8 84,791 + BACOVA_00833 0.44 -0.4 84,791 + BACOVA_00833 0.44 +0.5 84,895 + BACOVA_00833 0.49 +0.2 84,896 - BACOVA_00833 0.49 -1.3 84,897 + BACOVA_00833 0.49 -0.6 84,898 - BACOVA_00833 0.49 -0.1 85,010 + BACOVA_00833 0.54 +0.6 85,060 + BACOVA_00833 0.57 +0.0 85,094 + BACOVA_00833 0.58 -0.7 85,094 + BACOVA_00833 0.58 -0.2 85,094 + BACOVA_00833 0.58 -0.3 85,094 + BACOVA_00833 0.58 -0.5 85,094 + BACOVA_00833 0.58 +0.3 85,095 - BACOVA_00833 0.58 -0.4 85,095 - BACOVA_00833 0.58 -0.7 85,095 - BACOVA_00833 0.58 -1.4 85,117 - BACOVA_00833 0.59 -2.4 85,230 - BACOVA_00833 0.64 +0.3 85,231 + BACOVA_00833 0.64 -0.9 85,231 + BACOVA_00833 0.64 -1.1 85,232 - BACOVA_00833 0.64 -2.3 85,236 + BACOVA_00833 0.65 -0.2 85,237 - BACOVA_00833 0.65 -1.6 85,237 - BACOVA_00833 0.65 +0.3 85,237 - BACOVA_00833 0.65 -2.0 85,247 + BACOVA_00833 0.65 -1.1 85,248 - BACOVA_00833 0.65 -0.1 85,251 + BACOVA_00833 0.65 +1.6 85,258 - BACOVA_00833 0.66 -1.2 85,259 + BACOVA_00833 0.66 -0.3 85,259 + BACOVA_00833 0.66 +0.5 85,260 - BACOVA_00833 0.66 -0.1 85,260 - BACOVA_00833 0.66 +1.4 85,274 + BACOVA_00833 0.66 +1.3 85,326 + BACOVA_00833 0.69 -1.3 85,334 + BACOVA_00833 0.69 +0.6 85,335 - BACOVA_00833 0.69 +0.7 85,335 - BACOVA_00833 0.69 -1.5 85,335 - BACOVA_00833 0.69 +0.4 85,335 - BACOVA_00833 0.69 -0.4 85,335 - BACOVA_00833 0.69 -0.9 85,366 - BACOVA_00833 0.71 +0.3 85,485 + BACOVA_00833 0.76 -1.4 85,518 + BACOVA_00833 0.78 +1.3 85,603 + BACOVA_00833 0.82 +0.3 85,639 + BACOVA_00833 0.83 +0.4 85,640 - BACOVA_00833 0.83 -1.0 85,765 + BACOVA_00833 0.89 +1.1 85,880 + -0.2 85,880 + -0.3 85,881 - +0.6 85,881 - -1.6 85,958 - +0.1 85,958 - +1.8 85,963 + +0.5 85,964 - -0.2 86,017 + -0.9 86,059 - +0.4 86,059 - -0.4 86,074 - -0.0 86,079 + -0.4 86,079 + -0.7 86,079 + -0.1 86,084 - +0.8 86,084 - -0.2 86,084 - -0.1 86,084 - -1.5 86,108 - -0.8 86,151 - BACOVA_00834 0.21 -0.9 86,215 - BACOVA_00834 0.41 -1.1 86,231 + BACOVA_00834 0.46 -1.8 86,232 - BACOVA_00834 0.46 +0.3 86,313 - BACOVA_00834 0.72 -0.5 86,330 - BACOVA_00834 0.77 +0.4 86,356 + BACOVA_00834 0.86 -1.1 86,356 + BACOVA_00834 0.86 +2.3 86,369 - -0.6 86,370 + -0.7 86,371 - +0.7 86,371 - +0.6 86,371 - +0.8 86,373 - +0.3 86,373 - +0.0 86,373 - +0.3 86,373 - +0.2 86,373 - +0.7 86,373 - -1.6 86,374 + -0.7 86,374 + +0.0 86,374 + -1.1 86,374 + -0.0 86,420 - -0.2 86,436 + -0.3 86,438 + -1.7 86,439 - +0.6 86,439 - -0.4 86,439 - +0.3 86,445 - -0.9 86,466 - -1.5 86,475 - -0.4 86,475 - +0.7 86,475 - +0.5 86,493 + -0.1 86,510 - +1.2 86,535 - -1.3 86,556 + -0.9 86,562 + +0.3 86,642 + BACOVA_00835 0.18 -1.7 86,643 - BACOVA_00835 0.18 +0.0 86,643 - BACOVA_00835 0.18 +0.2 86,678 + BACOVA_00835 0.21 +0.3 86,679 - BACOVA_00835 0.22 -1.0 86,710 - BACOVA_00835 0.25 -0.2 86,721 + BACOVA_00835 0.26 +1.0 86,782 + BACOVA_00835 0.32 -0.9 86,783 - BACOVA_00835 0.32 -0.9 86,783 - BACOVA_00835 0.32 -0.5 86,790 + BACOVA_00835 0.33 -0.9 86,791 - BACOVA_00835 0.33 -0.4 86,791 - BACOVA_00835 0.33 -0.9 86,791 - BACOVA_00835 0.33 -0.3 86,791 - BACOVA_00835 0.33 -0.8 86,818 + BACOVA_00835 0.36 -0.5 86,823 + BACOVA_00835 0.37 +0.7 86,824 - BACOVA_00835 0.37 +1.1 86,847 + BACOVA_00835 0.39 -0.7 86,861 + BACOVA_00835 0.41 -1.2 86,891 + BACOVA_00835 0.44 -1.4 86,916 + BACOVA_00835 0.46 +0.2 86,916 + BACOVA_00835 0.46 -0.2 86,916 + BACOVA_00835 0.46 -1.2 86,917 - BACOVA_00835 0.46 +1.0 86,974 - BACOVA_00835 0.52 -0.6
Or see this region's nucleotide sequence