Experiment: Inulin from chicory 2.5 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_00827 and BACOVA_00828 are separated by 29 nucleotides BACOVA_00828 and BACOVA_00829 overlap by 4 nucleotides BACOVA_00829 and BACOVA_00830 are separated by 12 nucleotides
BACOVA_00827: BACOVA_00827 - hypothetical protein, at 77,734 to 79,014
_00827
BACOVA_00828: BACOVA_00828 - cytochrome c assembly protein, at 79,044 to 79,835
_00828
BACOVA_00829: BACOVA_00829 - hypothetical protein, at 79,832 to 81,055
_00829
BACOVA_00830: BACOVA_00830 - nitrite reductase, at 81,068 to 82,549
_00830
Position (kb) 79
80
81
82 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 78.852 kb on + strand, within BACOVA_00827 at 78.853 kb on - strand, within BACOVA_00827 at 78.853 kb on - strand, within BACOVA_00827 at 78.859 kb on + strand, within BACOVA_00827 at 78.936 kb on - strand at 78.961 kb on - strand at 78.961 kb on - strand at 78.963 kb on - strand at 78.980 kb on - strand at 78.985 kb on - strand at 78.985 kb on - strand at 79.001 kb on + strand at 79.051 kb on - strand at 79.058 kb on - strand at 79.061 kb on + strand at 79.137 kb on + strand, within BACOVA_00828 at 79.138 kb on - strand, within BACOVA_00828 at 79.138 kb on - strand, within BACOVA_00828 at 79.194 kb on - strand, within BACOVA_00828 at 79.194 kb on - strand, within BACOVA_00828 at 79.195 kb on + strand, within BACOVA_00828 at 79.195 kb on + strand, within BACOVA_00828 at 79.196 kb on - strand, within BACOVA_00828 at 79.205 kb on - strand, within BACOVA_00828 at 79.217 kb on + strand, within BACOVA_00828 at 79.299 kb on - strand, within BACOVA_00828 at 79.302 kb on + strand, within BACOVA_00828 at 79.303 kb on - strand, within BACOVA_00828 at 79.303 kb on - strand, within BACOVA_00828 at 79.303 kb on - strand, within BACOVA_00828 at 79.310 kb on + strand, within BACOVA_00828 at 79.323 kb on + strand, within BACOVA_00828 at 79.323 kb on + strand, within BACOVA_00828 at 79.324 kb on - strand, within BACOVA_00828 at 79.324 kb on - strand, within BACOVA_00828 at 79.324 kb on - strand, within BACOVA_00828 at 79.324 kb on - strand, within BACOVA_00828 at 79.324 kb on - strand, within BACOVA_00828 at 79.324 kb on - strand, within BACOVA_00828 at 79.324 kb on - strand, within BACOVA_00828 at 79.324 kb on - strand, within BACOVA_00828 at 79.328 kb on - strand, within BACOVA_00828 at 79.425 kb on - strand, within BACOVA_00828 at 79.429 kb on + strand, within BACOVA_00828 at 79.430 kb on - strand, within BACOVA_00828 at 79.440 kb on - strand, within BACOVA_00828 at 79.441 kb on + strand, within BACOVA_00828 at 79.441 kb on + strand, within BACOVA_00828 at 79.441 kb on + strand, within BACOVA_00828 at 79.441 kb on + strand, within BACOVA_00828 at 79.442 kb on - strand, within BACOVA_00828 at 79.488 kb on + strand, within BACOVA_00828 at 79.497 kb on - strand, within BACOVA_00828 at 79.532 kb on + strand, within BACOVA_00828 at 79.533 kb on - strand, within BACOVA_00828 at 79.577 kb on - strand, within BACOVA_00828 at 79.591 kb on + strand, within BACOVA_00828 at 79.627 kb on + strand, within BACOVA_00828 at 79.671 kb on + strand, within BACOVA_00828 at 79.815 kb on + strand at 79.816 kb on - strand at 79.818 kb on - strand at 79.818 kb on - strand at 79.822 kb on + strand at 79.901 kb on + strand at 79.901 kb on + strand at 79.901 kb on + strand at 79.904 kb on + strand at 79.993 kb on + strand, within BACOVA_00829 at 79.994 kb on - strand, within BACOVA_00829 at 80.123 kb on + strand, within BACOVA_00829 at 80.128 kb on + strand, within BACOVA_00829 at 80.186 kb on + strand, within BACOVA_00829 at 80.244 kb on + strand, within BACOVA_00829 at 80.244 kb on + strand, within BACOVA_00829 at 80.245 kb on - strand, within BACOVA_00829 at 80.245 kb on - strand, within BACOVA_00829 at 80.329 kb on + strand, within BACOVA_00829 at 80.382 kb on - strand, within BACOVA_00829 at 80.387 kb on + strand, within BACOVA_00829 at 80.387 kb on + strand, within BACOVA_00829 at 80.388 kb on - strand, within BACOVA_00829 at 80.388 kb on - strand, within BACOVA_00829 at 80.388 kb on - strand, within BACOVA_00829 at 80.410 kb on + strand, within BACOVA_00829 at 80.451 kb on + strand, within BACOVA_00829 at 80.512 kb on + strand, within BACOVA_00829 at 80.609 kb on - strand, within BACOVA_00829 at 80.620 kb on + strand, within BACOVA_00829 at 80.831 kb on + strand, within BACOVA_00829 at 80.831 kb on + strand, within BACOVA_00829 at 80.832 kb on - strand, within BACOVA_00829 at 80.854 kb on - strand, within BACOVA_00829 at 80.877 kb on + strand, within BACOVA_00829 at 80.877 kb on + strand, within BACOVA_00829 at 80.878 kb on - strand, within BACOVA_00829 at 80.922 kb on + strand, within BACOVA_00829 at 80.923 kb on - strand, within BACOVA_00829 at 80.931 kb on - strand, within BACOVA_00829 at 80.973 kb on - strand at 80.973 kb on - strand at 81.006 kb on - strand at 81.055 kb on + strand at 81.056 kb on - strand at 81.056 kb on - strand at 81.057 kb on + strand at 81.057 kb on + strand at 81.058 kb on - strand at 81.058 kb on - strand at 81.059 kb on + strand at 81.179 kb on - strand at 81.180 kb on + strand at 81.181 kb on - strand at 81.181 kb on - strand at 81.232 kb on + strand, within BACOVA_00830 at 81.233 kb on - strand, within BACOVA_00830 at 81.252 kb on - strand, within BACOVA_00830 at 81.445 kb on + strand, within BACOVA_00830 at 81.455 kb on - strand, within BACOVA_00830 at 81.519 kb on + strand, within BACOVA_00830 at 81.527 kb on - strand, within BACOVA_00830 at 81.529 kb on + strand, within BACOVA_00830 at 81.530 kb on - strand, within BACOVA_00830 at 81.533 kb on + strand, within BACOVA_00830 at 81.533 kb on + strand, within BACOVA_00830 at 81.584 kb on - strand, within BACOVA_00830 at 81.637 kb on + strand, within BACOVA_00830 at 81.640 kb on - strand, within BACOVA_00830 at 81.749 kb on - strand, within BACOVA_00830 at 81.754 kb on + strand, within BACOVA_00830 at 81.755 kb on - strand, within BACOVA_00830 at 81.756 kb on + strand, within BACOVA_00830 at 81.756 kb on + strand, within BACOVA_00830 at 81.756 kb on + strand, within BACOVA_00830 at 81.757 kb on - strand, within BACOVA_00830 at 81.762 kb on + strand, within BACOVA_00830 at 81.763 kb on - strand, within BACOVA_00830 at 81.780 kb on + strand, within BACOVA_00830 at 81.781 kb on - strand, within BACOVA_00830 at 81.783 kb on + strand, within BACOVA_00830 at 81.784 kb on - strand, within BACOVA_00830 at 81.784 kb on - strand, within BACOVA_00830 at 81.800 kb on + strand, within BACOVA_00830 at 81.806 kb on - strand, within BACOVA_00830 at 81.834 kb on + strand, within BACOVA_00830 at 81.838 kb on + strand, within BACOVA_00830 at 81.839 kb on - strand, within BACOVA_00830 at 81.839 kb on - strand, within BACOVA_00830 at 81.839 kb on - strand, within BACOVA_00830 at 81.881 kb on + strand, within BACOVA_00830 at 81.881 kb on + strand, within BACOVA_00830 at 81.907 kb on + strand, within BACOVA_00830 at 81.913 kb on + strand, within BACOVA_00830 at 81.948 kb on - strand, within BACOVA_00830 at 81.967 kb on + strand, within BACOVA_00830 at 81.968 kb on - strand, within BACOVA_00830 at 82.036 kb on + strand, within BACOVA_00830 at 82.048 kb on + strand, within BACOVA_00830 at 82.048 kb on + strand, within BACOVA_00830 at 82.048 kb on + strand, within BACOVA_00830 at 82.049 kb on - strand, within BACOVA_00830 at 82.049 kb on - strand, within BACOVA_00830 at 82.054 kb on + strand, within BACOVA_00830 at 82.055 kb on - strand, within BACOVA_00830
Per-strain Table
Position Strand Gene LocusTag Fraction Inulin from chicory 2.5 mg/mL (C) remove 78,852 + BACOVA_00827 0.87 -1.0 78,853 - BACOVA_00827 0.87 +0.0 78,853 - BACOVA_00827 0.87 -0.7 78,859 + BACOVA_00827 0.88 -0.1 78,936 - +1.0 78,961 - -0.9 78,961 - -0.2 78,963 - -0.8 78,980 - +0.8 78,985 - -0.7 78,985 - -1.5 79,001 + -0.4 79,051 - +2.1 79,058 - -0.3 79,061 + +0.8 79,137 + BACOVA_00828 0.12 -2.1 79,138 - BACOVA_00828 0.12 +0.2 79,138 - BACOVA_00828 0.12 +0.4 79,194 - BACOVA_00828 0.19 -2.0 79,194 - BACOVA_00828 0.19 -0.4 79,195 + BACOVA_00828 0.19 -0.1 79,195 + BACOVA_00828 0.19 +0.0 79,196 - BACOVA_00828 0.19 -0.6 79,205 - BACOVA_00828 0.20 -1.0 79,217 + BACOVA_00828 0.22 -0.0 79,299 - BACOVA_00828 0.32 -0.3 79,302 + BACOVA_00828 0.33 +0.0 79,303 - BACOVA_00828 0.33 +1.9 79,303 - BACOVA_00828 0.33 +0.3 79,303 - BACOVA_00828 0.33 -0.1 79,310 + BACOVA_00828 0.34 +1.0 79,323 + BACOVA_00828 0.35 -0.2 79,323 + BACOVA_00828 0.35 -1.7 79,324 - BACOVA_00828 0.35 -0.5 79,324 - BACOVA_00828 0.35 -0.3 79,324 - BACOVA_00828 0.35 +2.4 79,324 - BACOVA_00828 0.35 +0.7 79,324 - BACOVA_00828 0.35 +0.5 79,324 - BACOVA_00828 0.35 +1.1 79,324 - BACOVA_00828 0.35 -0.1 79,324 - BACOVA_00828 0.35 +1.0 79,328 - BACOVA_00828 0.36 -0.3 79,425 - BACOVA_00828 0.48 +1.1 79,429 + BACOVA_00828 0.49 -0.1 79,430 - BACOVA_00828 0.49 -0.5 79,440 - BACOVA_00828 0.50 -1.0 79,441 + BACOVA_00828 0.50 +0.9 79,441 + BACOVA_00828 0.50 -2.1 79,441 + BACOVA_00828 0.50 +1.0 79,441 + BACOVA_00828 0.50 -0.7 79,442 - BACOVA_00828 0.50 +1.0 79,488 + BACOVA_00828 0.56 +0.7 79,497 - BACOVA_00828 0.57 +0.3 79,532 + BACOVA_00828 0.62 +1.3 79,533 - BACOVA_00828 0.62 -0.2 79,577 - BACOVA_00828 0.67 -0.0 79,591 + BACOVA_00828 0.69 -1.1 79,627 + BACOVA_00828 0.74 +0.6 79,671 + BACOVA_00828 0.79 +0.5 79,815 + -1.2 79,816 - -0.2 79,818 - -2.9 79,818 - -1.7 79,822 + +0.7 79,901 + +0.1 79,901 + +0.0 79,901 + +0.0 79,904 + -0.3 79,993 + BACOVA_00829 0.13 -0.7 79,994 - BACOVA_00829 0.13 -0.4 80,123 + BACOVA_00829 0.24 -0.4 80,128 + BACOVA_00829 0.24 -0.4 80,186 + BACOVA_00829 0.29 +0.3 80,244 + BACOVA_00829 0.34 +0.8 80,244 + BACOVA_00829 0.34 -0.7 80,245 - BACOVA_00829 0.34 -0.2 80,245 - BACOVA_00829 0.34 +0.8 80,329 + BACOVA_00829 0.41 +0.1 80,382 - BACOVA_00829 0.45 +0.4 80,387 + BACOVA_00829 0.45 -0.1 80,387 + BACOVA_00829 0.45 +1.1 80,388 - BACOVA_00829 0.45 -1.8 80,388 - BACOVA_00829 0.45 -1.4 80,388 - BACOVA_00829 0.45 +1.4 80,410 + BACOVA_00829 0.47 +0.2 80,451 + BACOVA_00829 0.51 -0.9 80,512 + BACOVA_00829 0.56 -0.5 80,609 - BACOVA_00829 0.63 -0.2 80,620 + BACOVA_00829 0.64 -0.4 80,831 + BACOVA_00829 0.82 -1.8 80,831 + BACOVA_00829 0.82 +0.5 80,832 - BACOVA_00829 0.82 -0.7 80,854 - BACOVA_00829 0.83 +0.1 80,877 + BACOVA_00829 0.85 -0.7 80,877 + BACOVA_00829 0.85 +0.9 80,878 - BACOVA_00829 0.85 -1.4 80,922 + BACOVA_00829 0.89 -1.7 80,923 - BACOVA_00829 0.89 +0.0 80,931 - BACOVA_00829 0.90 +0.0 80,973 - +0.9 80,973 - -0.2 81,006 - +0.2 81,055 + +0.7 81,056 - +0.7 81,056 - -0.8 81,057 + +0.1 81,057 + +2.6 81,058 - -0.0 81,058 - -2.4 81,059 + -0.5 81,179 - -1.1 81,180 + -0.5 81,181 - -0.4 81,181 - -0.2 81,232 + BACOVA_00830 0.11 +0.5 81,233 - BACOVA_00830 0.11 -1.4 81,252 - BACOVA_00830 0.12 -0.9 81,445 + BACOVA_00830 0.25 +0.4 81,455 - BACOVA_00830 0.26 +0.1 81,519 + BACOVA_00830 0.30 +0.3 81,527 - BACOVA_00830 0.31 -0.4 81,529 + BACOVA_00830 0.31 +1.3 81,530 - BACOVA_00830 0.31 -0.3 81,533 + BACOVA_00830 0.31 -0.8 81,533 + BACOVA_00830 0.31 +0.5 81,584 - BACOVA_00830 0.35 -0.2 81,637 + BACOVA_00830 0.38 +0.7 81,640 - BACOVA_00830 0.39 +0.2 81,749 - BACOVA_00830 0.46 +1.6 81,754 + BACOVA_00830 0.46 +1.3 81,755 - BACOVA_00830 0.46 -0.2 81,756 + BACOVA_00830 0.46 -0.9 81,756 + BACOVA_00830 0.46 +0.2 81,756 + BACOVA_00830 0.46 -0.2 81,757 - BACOVA_00830 0.46 +2.0 81,762 + BACOVA_00830 0.47 +1.9 81,763 - BACOVA_00830 0.47 +0.1 81,780 + BACOVA_00830 0.48 -0.2 81,781 - BACOVA_00830 0.48 -0.1 81,783 + BACOVA_00830 0.48 +0.9 81,784 - BACOVA_00830 0.48 -1.2 81,784 - BACOVA_00830 0.48 -1.2 81,800 + BACOVA_00830 0.49 +0.1 81,806 - BACOVA_00830 0.50 -1.2 81,834 + BACOVA_00830 0.52 +0.4 81,838 + BACOVA_00830 0.52 -0.1 81,839 - BACOVA_00830 0.52 +0.3 81,839 - BACOVA_00830 0.52 +0.2 81,839 - BACOVA_00830 0.52 -0.6 81,881 + BACOVA_00830 0.55 -0.6 81,881 + BACOVA_00830 0.55 -0.2 81,907 + BACOVA_00830 0.57 -0.7 81,913 + BACOVA_00830 0.57 +0.2 81,948 - BACOVA_00830 0.59 +0.3 81,967 + BACOVA_00830 0.61 +0.2 81,968 - BACOVA_00830 0.61 +0.5 82,036 + BACOVA_00830 0.65 +0.4 82,048 + BACOVA_00830 0.66 -0.4 82,048 + BACOVA_00830 0.66 +0.1 82,048 + BACOVA_00830 0.66 +0.5 82,049 - BACOVA_00830 0.66 +1.2 82,049 - BACOVA_00830 0.66 +1.3 82,054 + BACOVA_00830 0.67 -0.9 82,055 - BACOVA_00830 0.67 -0.2
Or see this region's nucleotide sequence