Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_03088

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_03087 and MPMX26_03088 overlap by 56 nucleotidesMPMX26_03088 and MPMX26_03089 are separated by 90 nucleotidesMPMX26_03089 and MPMX26_03090 are separated by 364 nucleotides MPMX26_03087: MPMX26_03087 - IS5 family transposase ISAha3, at 2,110 to 2,721 _03087 MPMX26_03088: MPMX26_03088 - hypothetical protein, at 2,666 to 3,340 _03088 MPMX26_03089: MPMX26_03089 - hypothetical protein, at 3,431 to 3,748 _03089 MPMX26_03090: MPMX26_03090 - hypothetical protein, at 4,113 to 4,655 _03090 Position (kb) 2 3 4Strain fitness (log2 ratio) -1 0 1 2 3at 1.966 kb on - strandat 2.367 kb on + strand, within MPMX26_03087at 2.367 kb on + strand, within MPMX26_03087at 2.378 kb on + strand, within MPMX26_03087at 2.591 kb on + strand, within MPMX26_03087at 2.591 kb on + strand, within MPMX26_03087at 2.748 kb on + strand, within MPMX26_03088at 2.756 kb on - strand, within MPMX26_03088at 2.771 kb on + strand, within MPMX26_03088at 2.962 kb on + strand, within MPMX26_03088at 2.969 kb on + strand, within MPMX26_03088at 3.014 kb on + strand, within MPMX26_03088at 3.060 kb on + strand, within MPMX26_03088at 3.159 kb on + strand, within MPMX26_03088at 3.187 kb on + strand, within MPMX26_03088at 3.200 kb on + strand, within MPMX26_03088at 3.223 kb on + strand, within MPMX26_03088at 3.265 kb on - strand, within MPMX26_03088at 3.385 kb on + strandat 3.424 kb on - strandat 3.424 kb on - strandat 3.523 kb on - strand, within MPMX26_03089at 3.823 kb on + strandat 3.951 kb on + strandat 3.966 kb on + strandat 4.134 kb on + strandat 4.191 kb on + strand, within MPMX26_03090at 4.194 kb on + strand, within MPMX26_03090at 4.199 kb on + strand, within MPMX26_03090at 4.199 kb on + strand, within MPMX26_03090at 4.199 kb on + strand, within MPMX26_03090at 4.201 kb on + strand, within MPMX26_03090at 4.201 kb on + strand, within MPMX26_03090at 4.268 kb on + strand, within MPMX26_03090at 4.268 kb on + strand, within MPMX26_03090at 4.268 kb on + strand, within MPMX26_03090at 4.268 kb on + strand, within MPMX26_03090at 4.268 kb on + strand, within MPMX26_03090at 4.274 kb on + strand, within MPMX26_03090at 4.289 kb on + strand, within MPMX26_03090at 4.329 kb on + strand, within MPMX26_03090

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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1,966 - +1.1
2,367 + MPMX26_03087 0.42 +0.6
2,367 + MPMX26_03087 0.42 -1.0
2,378 + MPMX26_03087 0.44 +0.3
2,591 + MPMX26_03087 0.79 +0.3
2,591 + MPMX26_03087 0.79 -1.0
2,748 + MPMX26_03088 0.12 +1.8
2,756 - MPMX26_03088 0.13 -1.1
2,771 + MPMX26_03088 0.16 -0.5
2,962 + MPMX26_03088 0.44 +0.8
2,969 + MPMX26_03088 0.45 -0.4
3,014 + MPMX26_03088 0.52 +0.6
3,060 + MPMX26_03088 0.58 +1.8
3,159 + MPMX26_03088 0.73 -0.2
3,187 + MPMX26_03088 0.77 +0.4
3,200 + MPMX26_03088 0.79 -1.0
3,223 + MPMX26_03088 0.83 +0.4
3,265 - MPMX26_03088 0.89 +1.0
3,385 + +0.1
3,424 - +0.8
3,424 - +1.1
3,523 - MPMX26_03089 0.29 +2.4
3,823 + +1.7
3,951 + -0.3
3,966 + +0.8
4,134 + +0.3
4,191 + MPMX26_03090 0.14 +0.3
4,194 + MPMX26_03090 0.15 +1.2
4,199 + MPMX26_03090 0.16 +1.7
4,199 + MPMX26_03090 0.16 +0.2
4,199 + MPMX26_03090 0.16 +0.3
4,201 + MPMX26_03090 0.16 -0.6
4,201 + MPMX26_03090 0.16 +3.7
4,268 + MPMX26_03090 0.29 +0.6
4,268 + MPMX26_03090 0.29 +0.8
4,268 + MPMX26_03090 0.29 +0.8
4,268 + MPMX26_03090 0.29 +0.3
4,268 + MPMX26_03090 0.29 -0.7
4,274 + MPMX26_03090 0.30 +2.2
4,289 + MPMX26_03090 0.32 -1.0
4,329 + MPMX26_03090 0.40 +0.1

Or see this region's nucleotide sequence