Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02873

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02872 and MPMX26_02873 are separated by 195 nucleotidesMPMX26_02873 and MPMX26_02874 are separated by 175 nucleotides MPMX26_02872: MPMX26_02872 - hypothetical protein, at 2,969,020 to 2,969,904 _02872 MPMX26_02873: MPMX26_02873 - hypothetical protein, at 2,970,100 to 2,971,158 _02873 MPMX26_02874: MPMX26_02874 - hypothetical protein, at 2,971,334 to 2,972,365 _02874 Position (kb) 2970 2971 2972Strain fitness (log2 ratio) -1 0 1 2 3at 2969.199 kb on - strand, within MPMX26_02872at 2969.199 kb on - strand, within MPMX26_02872at 2969.199 kb on - strand, within MPMX26_02872at 2969.280 kb on - strand, within MPMX26_02872at 2969.327 kb on + strand, within MPMX26_02872at 2969.396 kb on - strand, within MPMX26_02872at 2969.409 kb on - strand, within MPMX26_02872at 2969.439 kb on - strand, within MPMX26_02872at 2969.647 kb on + strand, within MPMX26_02872at 2969.655 kb on - strand, within MPMX26_02872at 2969.690 kb on + strand, within MPMX26_02872at 2969.745 kb on - strand, within MPMX26_02872at 2969.765 kb on - strand, within MPMX26_02872at 2969.949 kb on + strandat 2969.949 kb on + strandat 2969.962 kb on - strandat 2970.005 kb on + strandat 2970.013 kb on - strandat 2970.013 kb on - strandat 2970.013 kb on - strandat 2970.092 kb on - strandat 2970.105 kb on - strandat 2970.170 kb on - strandat 2970.170 kb on - strandat 2970.243 kb on - strand, within MPMX26_02873at 2970.305 kb on - strand, within MPMX26_02873at 2970.394 kb on + strand, within MPMX26_02873at 2970.431 kb on + strand, within MPMX26_02873at 2970.589 kb on - strand, within MPMX26_02873at 2970.992 kb on - strand, within MPMX26_02873at 2971.089 kb on + strandat 2971.121 kb on + strandat 2971.231 kb on - strandat 2971.272 kb on - strandat 2971.277 kb on - strandat 2971.386 kb on - strandat 2971.402 kb on - strandat 2971.425 kb on - strandat 2971.425 kb on - strandat 2971.477 kb on - strand, within MPMX26_02874at 2971.477 kb on - strand, within MPMX26_02874at 2971.483 kb on - strand, within MPMX26_02874at 2971.483 kb on - strand, within MPMX26_02874at 2971.483 kb on - strand, within MPMX26_02874at 2971.658 kb on - strand, within MPMX26_02874at 2971.688 kb on - strand, within MPMX26_02874at 2971.709 kb on - strand, within MPMX26_02874at 2971.709 kb on - strand, within MPMX26_02874at 2971.709 kb on - strand, within MPMX26_02874at 2971.709 kb on - strand, within MPMX26_02874at 2971.813 kb on - strand, within MPMX26_02874at 2971.838 kb on - strand, within MPMX26_02874at 2971.846 kb on - strand, within MPMX26_02874at 2971.887 kb on + strand, within MPMX26_02874at 2971.887 kb on - strand, within MPMX26_02874at 2971.939 kb on - strand, within MPMX26_02874at 2971.987 kb on - strand, within MPMX26_02874at 2972.137 kb on - strand, within MPMX26_02874

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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2,969,199 - MPMX26_02872 0.20 -0.4
2,969,199 - MPMX26_02872 0.20 +0.8
2,969,199 - MPMX26_02872 0.20 -0.7
2,969,280 - MPMX26_02872 0.29 +0.7
2,969,327 + MPMX26_02872 0.35 +0.8
2,969,396 - MPMX26_02872 0.42 +0.4
2,969,409 - MPMX26_02872 0.44 -0.8
2,969,439 - MPMX26_02872 0.47 +0.4
2,969,647 + MPMX26_02872 0.71 +0.9
2,969,655 - MPMX26_02872 0.72 +1.2
2,969,690 + MPMX26_02872 0.76 +0.2
2,969,745 - MPMX26_02872 0.82 +1.1
2,969,765 - MPMX26_02872 0.84 -0.5
2,969,949 + -0.9
2,969,949 + +0.2
2,969,962 - -1.0
2,970,005 + +0.2
2,970,013 - +0.1
2,970,013 - -0.0
2,970,013 - -1.1
2,970,092 - -0.0
2,970,105 - +1.8
2,970,170 - +0.8
2,970,170 - -0.7
2,970,243 - MPMX26_02873 0.14 -1.4
2,970,305 - MPMX26_02873 0.19 -0.3
2,970,394 + MPMX26_02873 0.28 +0.3
2,970,431 + MPMX26_02873 0.31 -0.3
2,970,589 - MPMX26_02873 0.46 -0.3
2,970,992 - MPMX26_02873 0.84 -0.1
2,971,089 + +0.4
2,971,121 + -0.1
2,971,231 - +0.2
2,971,272 - +0.9
2,971,277 - +1.6
2,971,386 - +0.2
2,971,402 - +0.2
2,971,425 - +0.6
2,971,425 - +2.0
2,971,477 - MPMX26_02874 0.14 -0.5
2,971,477 - MPMX26_02874 0.14 +1.4
2,971,483 - MPMX26_02874 0.14 +2.9
2,971,483 - MPMX26_02874 0.14 +1.8
2,971,483 - MPMX26_02874 0.14 +0.3
2,971,658 - MPMX26_02874 0.31 -1.5
2,971,688 - MPMX26_02874 0.34 +1.2
2,971,709 - MPMX26_02874 0.36 +0.1
2,971,709 - MPMX26_02874 0.36 -0.8
2,971,709 - MPMX26_02874 0.36 +1.8
2,971,709 - MPMX26_02874 0.36 +0.6
2,971,813 - MPMX26_02874 0.46 +0.8
2,971,838 - MPMX26_02874 0.49 +1.1
2,971,846 - MPMX26_02874 0.50 +0.1
2,971,887 + MPMX26_02874 0.54 +1.4
2,971,887 - MPMX26_02874 0.54 +0.5
2,971,939 - MPMX26_02874 0.59 -0.7
2,971,987 - MPMX26_02874 0.63 -0.5
2,972,137 - MPMX26_02874 0.78 +0.2

Or see this region's nucleotide sequence