Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02565

Experiment: L-Proline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_02564 and MPMX26_02565 are separated by 420 nucleotidesMPMX26_02565 and MPMX26_02566 are separated by 124 nucleotidesMPMX26_02566 and MPMX26_02567 are separated by 17 nucleotides MPMX26_02564: MPMX26_02564 - FhuE receptor, at 2,656,824 to 2,659,067 _02564 MPMX26_02565: MPMX26_02565 - hypothetical protein, at 2,659,488 to 2,660,114 _02565 MPMX26_02566: MPMX26_02566 - hypothetical protein, at 2,660,239 to 2,660,802 _02566 MPMX26_02567: MPMX26_02567 - Methylated-DNA--protein-cysteine methyltransferase, at 2,660,820 to 2,661,308 _02567 Position (kb) 2659 2660 2661Strain fitness (log2 ratio) -1 0 1 2 3at 2659.680 kb on - strand, within MPMX26_02565at 2659.766 kb on - strand, within MPMX26_02565at 2659.773 kb on - strand, within MPMX26_02565at 2659.773 kb on - strand, within MPMX26_02565at 2659.773 kb on - strand, within MPMX26_02565at 2659.871 kb on - strand, within MPMX26_02565at 2659.947 kb on - strand, within MPMX26_02565at 2660.273 kb on + strandat 2660.273 kb on + strandat 2660.273 kb on + strandat 2660.288 kb on + strandat 2660.288 kb on + strandat 2660.288 kb on + strandat 2660.402 kb on + strand, within MPMX26_02566at 2660.437 kb on + strand, within MPMX26_02566at 2660.458 kb on + strand, within MPMX26_02566at 2660.458 kb on + strand, within MPMX26_02566at 2660.467 kb on + strand, within MPMX26_02566at 2660.638 kb on + strand, within MPMX26_02566at 2660.719 kb on + strand, within MPMX26_02566at 2660.719 kb on + strand, within MPMX26_02566at 2660.719 kb on + strand, within MPMX26_02566at 2660.719 kb on + strand, within MPMX26_02566at 2660.913 kb on - strand, within MPMX26_02567at 2660.914 kb on - strand, within MPMX26_02567at 2660.985 kb on - strand, within MPMX26_02567at 2660.985 kb on - strand, within MPMX26_02567at 2660.985 kb on - strand, within MPMX26_02567at 2661.011 kb on - strand, within MPMX26_02567at 2661.022 kb on - strand, within MPMX26_02567at 2661.024 kb on - strand, within MPMX26_02567at 2661.029 kb on - strand, within MPMX26_02567at 2661.055 kb on - strand, within MPMX26_02567at 2661.060 kb on - strand, within MPMX26_02567at 2661.060 kb on - strand, within MPMX26_02567at 2661.060 kb on - strand, within MPMX26_02567at 2661.060 kb on - strand, within MPMX26_02567at 2661.060 kb on - strand, within MPMX26_02567at 2661.060 kb on - strand, within MPMX26_02567at 2661.065 kb on - strand, within MPMX26_02567at 2661.095 kb on - strand, within MPMX26_02567at 2661.095 kb on - strand, within MPMX26_02567at 2661.095 kb on - strand, within MPMX26_02567at 2661.095 kb on - strand, within MPMX26_02567at 2661.095 kb on - strand, within MPMX26_02567at 2661.095 kb on - strand, within MPMX26_02567at 2661.095 kb on - strand, within MPMX26_02567at 2661.095 kb on - strand, within MPMX26_02567at 2661.095 kb on - strand, within MPMX26_02567

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
remove
2,659,680 - MPMX26_02565 0.31 -0.5
2,659,766 - MPMX26_02565 0.44 +2.2
2,659,773 - MPMX26_02565 0.45 -0.7
2,659,773 - MPMX26_02565 0.45 +0.1
2,659,773 - MPMX26_02565 0.45 -0.7
2,659,871 - MPMX26_02565 0.61 +0.4
2,659,947 - MPMX26_02565 0.73 +0.0
2,660,273 + +0.1
2,660,273 + +0.8
2,660,273 + +3.0
2,660,288 + +1.4
2,660,288 + +1.5
2,660,288 + +0.9
2,660,402 + MPMX26_02566 0.29 +0.0
2,660,437 + MPMX26_02566 0.35 -0.3
2,660,458 + MPMX26_02566 0.39 +1.3
2,660,458 + MPMX26_02566 0.39 -0.3
2,660,467 + MPMX26_02566 0.40 +0.1
2,660,638 + MPMX26_02566 0.71 +0.6
2,660,719 + MPMX26_02566 0.85 +0.8
2,660,719 + MPMX26_02566 0.85 +1.1
2,660,719 + MPMX26_02566 0.85 +1.1
2,660,719 + MPMX26_02566 0.85 +0.8
2,660,913 - MPMX26_02567 0.19 -0.8
2,660,914 - MPMX26_02567 0.19 -0.1
2,660,985 - MPMX26_02567 0.34 +0.2
2,660,985 - MPMX26_02567 0.34 -0.5
2,660,985 - MPMX26_02567 0.34 -0.2
2,661,011 - MPMX26_02567 0.39 -0.1
2,661,022 - MPMX26_02567 0.41 +1.8
2,661,024 - MPMX26_02567 0.42 +0.7
2,661,029 - MPMX26_02567 0.43 -0.4
2,661,055 - MPMX26_02567 0.48 -0.8
2,661,060 - MPMX26_02567 0.49 -0.4
2,661,060 - MPMX26_02567 0.49 +0.1
2,661,060 - MPMX26_02567 0.49 -1.4
2,661,060 - MPMX26_02567 0.49 +0.3
2,661,060 - MPMX26_02567 0.49 +0.6
2,661,060 - MPMX26_02567 0.49 -1.2
2,661,065 - MPMX26_02567 0.50 +0.1
2,661,095 - MPMX26_02567 0.56 +0.1
2,661,095 - MPMX26_02567 0.56 -1.4
2,661,095 - MPMX26_02567 0.56 -0.2
2,661,095 - MPMX26_02567 0.56 +1.6
2,661,095 - MPMX26_02567 0.56 -0.8
2,661,095 - MPMX26_02567 0.56 +0.0
2,661,095 - MPMX26_02567 0.56 -0.3
2,661,095 - MPMX26_02567 0.56 +0.5
2,661,095 - MPMX26_02567 0.56 -0.8

Or see this region's nucleotide sequence