Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_02003

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_02001 and MPMX26_02002 are separated by 73 nucleotidesMPMX26_02002 and MPMX26_02003 are separated by 195 nucleotidesMPMX26_02003 and MPMX26_02004 are separated by 19 nucleotides MPMX26_02001: MPMX26_02001 - hypothetical protein, at 2,062,266 to 2,062,985 _02001 MPMX26_02002: MPMX26_02002 - hypothetical protein, at 2,063,059 to 2,063,766 _02002 MPMX26_02003: MPMX26_02003 - Putrescine importer PuuP, at 2,063,962 to 2,065,293 _02003 MPMX26_02004: MPMX26_02004 - Gamma-glutamylputrescine oxidoreductase, at 2,065,313 to 2,066,728 _02004 Position (kb) 2063 2064 2065 2066Strain fitness (log2 ratio) -2 -1 0 1at 2063.518 kb on + strand, within MPMX26_02002at 2064.184 kb on + strand, within MPMX26_02003at 2064.197 kb on - strand, within MPMX26_02003at 2065.406 kb on - strandat 2065.633 kb on + strand, within MPMX26_02004

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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2,063,518 + MPMX26_02002 0.65 +1.1
2,064,184 + MPMX26_02003 0.17 +1.1
2,064,197 - MPMX26_02003 0.18 +0.7
2,065,406 - -2.1
2,065,633 + MPMX26_02004 0.23 +1.0

Or see this region's nucleotide sequence