Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_01874

Experiment: L-Proline (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX26_01873 and MPMX26_01874 overlap by 4 nucleotidesMPMX26_01874 and MPMX26_01875 are separated by 884 nucleotides MPMX26_01873: MPMX26_01873 - Methionine import ATP-binding protein MetN, at 1,911,836 to 1,912,861 _01873 MPMX26_01874: MPMX26_01874 - D-methionine transport system permease protein MetI, at 1,912,858 to 1,913,553 _01874 MPMX26_01875: MPMX26_01875 - DNA polymerase III subunit alpha, at 1,914,438 to 1,918,004 _01875 Position (kb) 1912 1913 1914Strain fitness (log2 ratio) -2 -1 0 1at 1911.871 kb on + strandat 1911.871 kb on + strandat 1911.887 kb on + strandat 1911.904 kb on + strandat 1911.961 kb on + strand, within MPMX26_01873at 1911.961 kb on + strand, within MPMX26_01873at 1911.962 kb on + strand, within MPMX26_01873at 1912.012 kb on + strand, within MPMX26_01873at 1912.013 kb on + strand, within MPMX26_01873at 1912.013 kb on + strand, within MPMX26_01873at 1912.018 kb on + strand, within MPMX26_01873at 1912.046 kb on + strand, within MPMX26_01873at 1912.046 kb on + strand, within MPMX26_01873at 1912.160 kb on + strand, within MPMX26_01873at 1912.160 kb on + strand, within MPMX26_01873at 1912.165 kb on + strand, within MPMX26_01873at 1912.167 kb on + strand, within MPMX26_01873at 1912.255 kb on + strand, within MPMX26_01873at 1912.255 kb on + strand, within MPMX26_01873at 1912.255 kb on + strand, within MPMX26_01873at 1912.255 kb on + strand, within MPMX26_01873at 1912.255 kb on + strand, within MPMX26_01873at 1912.255 kb on + strand, within MPMX26_01873at 1912.298 kb on + strand, within MPMX26_01873at 1912.333 kb on + strand, within MPMX26_01873at 1912.333 kb on + strand, within MPMX26_01873at 1912.352 kb on + strand, within MPMX26_01873at 1912.400 kb on + strand, within MPMX26_01873at 1912.444 kb on + strand, within MPMX26_01873at 1912.503 kb on + strand, within MPMX26_01873at 1912.503 kb on + strand, within MPMX26_01873at 1912.535 kb on + strand, within MPMX26_01873at 1912.544 kb on + strand, within MPMX26_01873at 1912.544 kb on + strand, within MPMX26_01873at 1912.544 kb on + strand, within MPMX26_01873at 1912.619 kb on + strand, within MPMX26_01873at 1912.663 kb on + strand, within MPMX26_01873at 1912.672 kb on + strand, within MPMX26_01873at 1912.771 kb on + strandat 1912.771 kb on + strandat 1912.782 kb on + strandat 1912.783 kb on + strandat 1912.802 kb on + strandat 1912.835 kb on + strandat 1912.854 kb on + strandat 1912.873 kb on + strandat 1912.881 kb on + strandat 1912.932 kb on + strand, within MPMX26_01874at 1912.983 kb on + strand, within MPMX26_01874at 1912.983 kb on + strand, within MPMX26_01874at 1912.992 kb on + strand, within MPMX26_01874at 1912.993 kb on + strand, within MPMX26_01874at 1913.000 kb on + strand, within MPMX26_01874at 1913.005 kb on + strand, within MPMX26_01874at 1913.010 kb on + strand, within MPMX26_01874at 1913.010 kb on + strand, within MPMX26_01874at 1913.010 kb on + strand, within MPMX26_01874at 1913.010 kb on + strand, within MPMX26_01874at 1913.025 kb on + strand, within MPMX26_01874at 1913.025 kb on + strand, within MPMX26_01874at 1913.142 kb on + strand, within MPMX26_01874at 1913.154 kb on + strand, within MPMX26_01874at 1913.180 kb on + strand, within MPMX26_01874at 1913.275 kb on + strand, within MPMX26_01874at 1913.355 kb on + strand, within MPMX26_01874at 1913.369 kb on + strand, within MPMX26_01874at 1913.369 kb on + strand, within MPMX26_01874at 1913.379 kb on + strand, within MPMX26_01874at 1913.401 kb on + strand, within MPMX26_01874at 1913.402 kb on + strand, within MPMX26_01874at 1913.420 kb on + strand, within MPMX26_01874at 1913.422 kb on + strand, within MPMX26_01874at 1913.528 kb on + strandat 1913.533 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
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1,911,871 + -0.3
1,911,871 + +0.0
1,911,887 + -0.5
1,911,904 + +0.2
1,911,961 + MPMX26_01873 0.12 +0.4
1,911,961 + MPMX26_01873 0.12 -0.2
1,911,962 + MPMX26_01873 0.12 -1.3
1,912,012 + MPMX26_01873 0.17 +0.0
1,912,013 + MPMX26_01873 0.17 -1.0
1,912,013 + MPMX26_01873 0.17 +0.1
1,912,018 + MPMX26_01873 0.18 +0.4
1,912,046 + MPMX26_01873 0.20 +0.6
1,912,046 + MPMX26_01873 0.20 -0.3
1,912,160 + MPMX26_01873 0.32 -0.3
1,912,160 + MPMX26_01873 0.32 +0.0
1,912,165 + MPMX26_01873 0.32 +0.3
1,912,167 + MPMX26_01873 0.32 +0.2
1,912,255 + MPMX26_01873 0.41 +1.4
1,912,255 + MPMX26_01873 0.41 +0.1
1,912,255 + MPMX26_01873 0.41 +0.5
1,912,255 + MPMX26_01873 0.41 -0.6
1,912,255 + MPMX26_01873 0.41 -0.1
1,912,255 + MPMX26_01873 0.41 -0.6
1,912,298 + MPMX26_01873 0.45 -1.0
1,912,333 + MPMX26_01873 0.48 -0.4
1,912,333 + MPMX26_01873 0.48 +0.3
1,912,352 + MPMX26_01873 0.50 -0.2
1,912,400 + MPMX26_01873 0.55 +0.2
1,912,444 + MPMX26_01873 0.59 +0.4
1,912,503 + MPMX26_01873 0.65 +0.1
1,912,503 + MPMX26_01873 0.65 -0.6
1,912,535 + MPMX26_01873 0.68 +1.3
1,912,544 + MPMX26_01873 0.69 -1.9
1,912,544 + MPMX26_01873 0.69 -1.2
1,912,544 + MPMX26_01873 0.69 -0.4
1,912,619 + MPMX26_01873 0.76 -0.7
1,912,663 + MPMX26_01873 0.81 +0.1
1,912,672 + MPMX26_01873 0.81 -0.1
1,912,771 + +1.2
1,912,771 + -0.3
1,912,782 + +1.0
1,912,783 + -0.3
1,912,802 + -1.0
1,912,835 + +0.1
1,912,854 + +0.1
1,912,873 + -0.9
1,912,881 + -0.6
1,912,932 + MPMX26_01874 0.11 -0.2
1,912,983 + MPMX26_01874 0.18 +0.9
1,912,983 + MPMX26_01874 0.18 +0.2
1,912,992 + MPMX26_01874 0.19 -0.5
1,912,993 + MPMX26_01874 0.19 -0.7
1,913,000 + MPMX26_01874 0.20 +1.4
1,913,005 + MPMX26_01874 0.21 +0.2
1,913,010 + MPMX26_01874 0.22 -0.8
1,913,010 + MPMX26_01874 0.22 -0.3
1,913,010 + MPMX26_01874 0.22 +0.6
1,913,010 + MPMX26_01874 0.22 +1.5
1,913,025 + MPMX26_01874 0.24 +0.0
1,913,025 + MPMX26_01874 0.24 +0.0
1,913,142 + MPMX26_01874 0.41 +0.1
1,913,154 + MPMX26_01874 0.43 -0.8
1,913,180 + MPMX26_01874 0.46 +1.0
1,913,275 + MPMX26_01874 0.60 -1.3
1,913,355 + MPMX26_01874 0.71 -0.1
1,913,369 + MPMX26_01874 0.73 +0.7
1,913,369 + MPMX26_01874 0.73 +0.2
1,913,379 + MPMX26_01874 0.75 +1.5
1,913,401 + MPMX26_01874 0.78 +0.7
1,913,402 + MPMX26_01874 0.78 -0.4
1,913,420 + MPMX26_01874 0.81 +0.0
1,913,422 + MPMX26_01874 0.81 +0.4
1,913,528 + -0.5
1,913,533 + -0.3

Or see this region's nucleotide sequence