Strain Fitness in Acinetobacter radioresistens SK82 around MPMX26_00045

Experiment: L-Proline (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX26_00044 and MPMX26_00045 are separated by 65 nucleotidesMPMX26_00045 and MPMX26_00046 are separated by 46 nucleotidesMPMX26_00046 and MPMX26_00047 are separated by 208 nucleotides MPMX26_00044: MPMX26_00044 - putative lipid II flippase MurJ, at 47,373 to 48,914 _00044 MPMX26_00045: MPMX26_00045 - Outer membrane protein MIP, at 48,980 to 49,669 _00045 MPMX26_00046: MPMX26_00046 - putative FKBP-type peptidyl-prolyl cis-trans isomerase FkpA, at 49,716 to 50,420 _00046 MPMX26_00047: MPMX26_00047 - Tyrosine-protein kinase ptk, at 50,629 to 52,812 _00047 Position (kb) 48 49 50Strain fitness (log2 ratio) -1 0 1at 48.886 kb on + strandat 48.909 kb on + strandat 48.919 kb on + strandat 48.958 kb on - strandat 49.008 kb on - strandat 49.019 kb on + strandat 49.033 kb on - strandat 49.033 kb on - strandat 49.041 kb on - strandat 49.067 kb on - strand, within MPMX26_00045at 49.113 kb on - strand, within MPMX26_00045at 49.123 kb on - strand, within MPMX26_00045at 49.123 kb on - strand, within MPMX26_00045at 49.123 kb on - strand, within MPMX26_00045at 49.123 kb on - strand, within MPMX26_00045at 49.123 kb on - strand, within MPMX26_00045at 49.130 kb on - strand, within MPMX26_00045at 49.130 kb on - strand, within MPMX26_00045at 49.130 kb on - strand, within MPMX26_00045at 49.131 kb on - strand, within MPMX26_00045at 49.142 kb on - strand, within MPMX26_00045at 49.185 kb on - strand, within MPMX26_00045at 49.188 kb on - strand, within MPMX26_00045at 49.188 kb on - strand, within MPMX26_00045at 49.188 kb on - strand, within MPMX26_00045at 49.198 kb on - strand, within MPMX26_00045at 49.208 kb on - strand, within MPMX26_00045at 49.208 kb on - strand, within MPMX26_00045at 49.208 kb on - strand, within MPMX26_00045at 49.229 kb on - strand, within MPMX26_00045at 49.238 kb on - strand, within MPMX26_00045at 49.238 kb on - strand, within MPMX26_00045at 49.238 kb on - strand, within MPMX26_00045at 49.238 kb on - strand, within MPMX26_00045at 49.238 kb on - strand, within MPMX26_00045at 49.238 kb on - strand, within MPMX26_00045at 49.245 kb on - strand, within MPMX26_00045at 49.297 kb on - strand, within MPMX26_00045at 49.358 kb on - strand, within MPMX26_00045at 49.358 kb on - strand, within MPMX26_00045at 49.442 kb on - strand, within MPMX26_00045at 49.442 kb on - strand, within MPMX26_00045at 49.462 kb on - strand, within MPMX26_00045at 49.480 kb on - strand, within MPMX26_00045at 49.521 kb on - strand, within MPMX26_00045at 49.521 kb on - strand, within MPMX26_00045at 49.530 kb on - strand, within MPMX26_00045at 49.530 kb on - strand, within MPMX26_00045at 49.530 kb on - strand, within MPMX26_00045at 49.548 kb on - strand, within MPMX26_00045at 49.549 kb on - strand, within MPMX26_00045at 49.549 kb on - strand, within MPMX26_00045at 49.549 kb on - strand, within MPMX26_00045at 49.555 kb on - strand, within MPMX26_00045at 49.555 kb on - strand, within MPMX26_00045at 49.555 kb on - strand, within MPMX26_00045at 49.555 kb on - strand, within MPMX26_00045at 49.555 kb on - strand, within MPMX26_00045at 49.555 kb on - strand, within MPMX26_00045at 49.572 kb on - strand, within MPMX26_00045at 49.573 kb on - strand, within MPMX26_00045at 49.574 kb on - strand, within MPMX26_00045at 49.574 kb on - strand, within MPMX26_00045at 49.574 kb on - strand, within MPMX26_00045at 49.574 kb on - strand, within MPMX26_00045at 49.609 kb on - strandat 49.621 kb on - strandat 49.621 kb on - strandat 49.621 kb on - strandat 49.621 kb on - strandat 49.645 kb on - strandat 49.645 kb on - strandat 49.693 kb on - strandat 49.693 kb on - strandat 49.698 kb on - strandat 49.702 kb on - strandat 49.731 kb on - strandat 49.731 kb on - strandat 49.731 kb on - strandat 49.731 kb on - strandat 49.731 kb on - strandat 49.731 kb on - strandat 49.763 kb on - strandat 49.766 kb on - strandat 49.785 kb on - strandat 49.785 kb on - strandat 49.785 kb on - strandat 49.785 kb on - strandat 49.790 kb on - strand, within MPMX26_00046at 49.800 kb on - strand, within MPMX26_00046at 49.810 kb on + strand, within MPMX26_00046at 49.818 kb on - strand, within MPMX26_00046at 49.818 kb on - strand, within MPMX26_00046at 49.818 kb on - strand, within MPMX26_00046at 49.818 kb on - strand, within MPMX26_00046at 49.818 kb on - strand, within MPMX26_00046at 49.818 kb on - strand, within MPMX26_00046at 49.818 kb on - strand, within MPMX26_00046at 49.818 kb on - strand, within MPMX26_00046at 49.818 kb on - strand, within MPMX26_00046at 49.818 kb on - strand, within MPMX26_00046at 49.818 kb on - strand, within MPMX26_00046at 49.818 kb on - strand, within MPMX26_00046at 49.818 kb on - strand, within MPMX26_00046at 49.818 kb on - strand, within MPMX26_00046at 49.823 kb on - strand, within MPMX26_00046at 49.823 kb on - strand, within MPMX26_00046at 49.823 kb on - strand, within MPMX26_00046at 49.823 kb on - strand, within MPMX26_00046at 49.823 kb on - strand, within MPMX26_00046at 49.864 kb on - strand, within MPMX26_00046at 49.864 kb on - strand, within MPMX26_00046at 49.869 kb on - strand, within MPMX26_00046at 49.898 kb on - strand, within MPMX26_00046at 49.908 kb on - strand, within MPMX26_00046at 49.912 kb on - strand, within MPMX26_00046at 49.918 kb on - strand, within MPMX26_00046at 49.921 kb on - strand, within MPMX26_00046at 49.921 kb on - strand, within MPMX26_00046at 49.931 kb on - strand, within MPMX26_00046at 49.931 kb on - strand, within MPMX26_00046at 49.949 kb on + strand, within MPMX26_00046at 49.952 kb on - strand, within MPMX26_00046at 49.959 kb on - strand, within MPMX26_00046at 49.959 kb on - strand, within MPMX26_00046at 49.964 kb on - strand, within MPMX26_00046at 49.989 kb on - strand, within MPMX26_00046at 49.989 kb on - strand, within MPMX26_00046at 50.004 kb on - strand, within MPMX26_00046at 50.004 kb on - strand, within MPMX26_00046at 50.004 kb on - strand, within MPMX26_00046at 50.004 kb on - strand, within MPMX26_00046at 50.004 kb on - strand, within MPMX26_00046at 50.004 kb on - strand, within MPMX26_00046at 50.004 kb on - strand, within MPMX26_00046at 50.004 kb on - strand, within MPMX26_00046at 50.004 kb on - strand, within MPMX26_00046at 50.004 kb on - strand, within MPMX26_00046at 50.004 kb on - strand, within MPMX26_00046at 50.004 kb on - strand, within MPMX26_00046at 50.043 kb on - strand, within MPMX26_00046at 50.043 kb on - strand, within MPMX26_00046at 50.043 kb on - strand, within MPMX26_00046at 50.043 kb on - strand, within MPMX26_00046at 50.043 kb on - strand, within MPMX26_00046at 50.048 kb on - strand, within MPMX26_00046at 50.145 kb on - strand, within MPMX26_00046at 50.145 kb on - strand, within MPMX26_00046at 50.145 kb on - strand, within MPMX26_00046at 50.161 kb on - strand, within MPMX26_00046at 50.166 kb on - strand, within MPMX26_00046at 50.166 kb on - strand, within MPMX26_00046at 50.168 kb on - strand, within MPMX26_00046at 50.168 kb on - strand, within MPMX26_00046at 50.168 kb on - strand, within MPMX26_00046at 50.171 kb on - strand, within MPMX26_00046at 50.182 kb on - strand, within MPMX26_00046at 50.184 kb on - strand, within MPMX26_00046at 50.184 kb on - strand, within MPMX26_00046at 50.184 kb on - strand, within MPMX26_00046at 50.193 kb on - strand, within MPMX26_00046at 50.199 kb on - strand, within MPMX26_00046at 50.204 kb on - strand, within MPMX26_00046at 50.204 kb on - strand, within MPMX26_00046at 50.204 kb on - strand, within MPMX26_00046at 50.266 kb on - strand, within MPMX26_00046at 50.272 kb on - strand, within MPMX26_00046at 50.272 kb on - strand, within MPMX26_00046at 50.274 kb on - strand, within MPMX26_00046at 50.274 kb on - strand, within MPMX26_00046at 50.274 kb on - strand, within MPMX26_00046at 50.274 kb on - strand, within MPMX26_00046at 50.274 kb on - strand, within MPMX26_00046at 50.279 kb on - strand, within MPMX26_00046at 50.302 kb on - strand, within MPMX26_00046at 50.326 kb on - strand, within MPMX26_00046at 50.370 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.372 kb on - strandat 50.377 kb on - strandat 50.392 kb on - strandat 50.404 kb on - strandat 50.404 kb on - strandat 50.411 kb on - strandat 50.411 kb on - strandat 50.411 kb on - strandat 50.426 kb on - strandat 50.426 kb on - strandat 50.434 kb on - strandat 50.498 kb on - strandat 50.569 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-Proline (C)
remove
48,886 + +0.5
48,909 + +1.2
48,919 + -0.6
48,958 - -0.3
49,008 - +0.5
49,019 + +0.5
49,033 - +0.5
49,033 - +0.2
49,041 - +0.3
49,067 - MPMX26_00045 0.13 +0.7
49,113 - MPMX26_00045 0.19 +0.6
49,123 - MPMX26_00045 0.21 +0.9
49,123 - MPMX26_00045 0.21 +0.2
49,123 - MPMX26_00045 0.21 +0.5
49,123 - MPMX26_00045 0.21 +0.3
49,123 - MPMX26_00045 0.21 +0.2
49,130 - MPMX26_00045 0.22 +0.5
49,130 - MPMX26_00045 0.22 +0.4
49,130 - MPMX26_00045 0.22 +0.5
49,131 - MPMX26_00045 0.22 +0.8
49,142 - MPMX26_00045 0.23 +0.7
49,185 - MPMX26_00045 0.30 +0.5
49,188 - MPMX26_00045 0.30 +0.4
49,188 - MPMX26_00045 0.30 +0.4
49,188 - MPMX26_00045 0.30 +0.8
49,198 - MPMX26_00045 0.32 +0.5
49,208 - MPMX26_00045 0.33 +0.7
49,208 - MPMX26_00045 0.33 +0.5
49,208 - MPMX26_00045 0.33 +0.3
49,229 - MPMX26_00045 0.36 +0.5
49,238 - MPMX26_00045 0.37 +0.4
49,238 - MPMX26_00045 0.37 +0.5
49,238 - MPMX26_00045 0.37 +0.7
49,238 - MPMX26_00045 0.37 +0.6
49,238 - MPMX26_00045 0.37 +0.7
49,238 - MPMX26_00045 0.37 +0.4
49,245 - MPMX26_00045 0.38 +0.6
49,297 - MPMX26_00045 0.46 +0.8
49,358 - MPMX26_00045 0.55 +0.5
49,358 - MPMX26_00045 0.55 +0.9
49,442 - MPMX26_00045 0.67 +0.5
49,442 - MPMX26_00045 0.67 +0.3
49,462 - MPMX26_00045 0.70 +1.7
49,480 - MPMX26_00045 0.72 +0.7
49,521 - MPMX26_00045 0.78 +0.5
49,521 - MPMX26_00045 0.78 +0.5
49,530 - MPMX26_00045 0.80 +0.8
49,530 - MPMX26_00045 0.80 +0.7
49,530 - MPMX26_00045 0.80 +0.5
49,548 - MPMX26_00045 0.82 +0.4
49,549 - MPMX26_00045 0.82 +1.4
49,549 - MPMX26_00045 0.82 +0.5
49,549 - MPMX26_00045 0.82 +0.7
49,555 - MPMX26_00045 0.83 +0.7
49,555 - MPMX26_00045 0.83 +0.5
49,555 - MPMX26_00045 0.83 +0.4
49,555 - MPMX26_00045 0.83 +0.3
49,555 - MPMX26_00045 0.83 +0.6
49,555 - MPMX26_00045 0.83 +0.5
49,572 - MPMX26_00045 0.86 +0.6
49,573 - MPMX26_00045 0.86 +0.7
49,574 - MPMX26_00045 0.86 +0.8
49,574 - MPMX26_00045 0.86 +0.5
49,574 - MPMX26_00045 0.86 +0.5
49,574 - MPMX26_00045 0.86 +0.4
49,609 - -0.2
49,621 - +0.4
49,621 - +0.8
49,621 - +0.3
49,621 - +0.2
49,645 - +0.8
49,645 - +0.5
49,693 - +0.7
49,693 - +0.3
49,698 - +0.1
49,702 - +0.4
49,731 - +0.3
49,731 - +0.8
49,731 - +0.5
49,731 - +0.3
49,731 - +0.5
49,731 - +0.5
49,763 - +0.5
49,766 - +1.1
49,785 - +0.8
49,785 - +0.6
49,785 - +1.0
49,785 - +0.7
49,790 - MPMX26_00046 0.10 +1.0
49,800 - MPMX26_00046 0.12 +0.7
49,810 + MPMX26_00046 0.13 +0.8
49,818 - MPMX26_00046 0.14 +1.0
49,818 - MPMX26_00046 0.14 +1.0
49,818 - MPMX26_00046 0.14 +0.6
49,818 - MPMX26_00046 0.14 +0.6
49,818 - MPMX26_00046 0.14 +0.1
49,818 - MPMX26_00046 0.14 +0.8
49,818 - MPMX26_00046 0.14 +0.3
49,818 - MPMX26_00046 0.14 +0.5
49,818 - MPMX26_00046 0.14 +0.8
49,818 - MPMX26_00046 0.14 +0.6
49,818 - MPMX26_00046 0.14 +0.7
49,818 - MPMX26_00046 0.14 +0.9
49,818 - MPMX26_00046 0.14 -1.6
49,818 - MPMX26_00046 0.14 +0.6
49,823 - MPMX26_00046 0.15 +0.7
49,823 - MPMX26_00046 0.15 +0.7
49,823 - MPMX26_00046 0.15 +0.7
49,823 - MPMX26_00046 0.15 +0.2
49,823 - MPMX26_00046 0.15 +0.8
49,864 - MPMX26_00046 0.21 +0.7
49,864 - MPMX26_00046 0.21 +0.7
49,869 - MPMX26_00046 0.22 +0.7
49,898 - MPMX26_00046 0.26 +0.6
49,908 - MPMX26_00046 0.27 +0.4
49,912 - MPMX26_00046 0.28 +0.4
49,918 - MPMX26_00046 0.29 +0.6
49,921 - MPMX26_00046 0.29 +0.5
49,921 - MPMX26_00046 0.29 +0.8
49,931 - MPMX26_00046 0.30 +0.4
49,931 - MPMX26_00046 0.30 +0.7
49,949 + MPMX26_00046 0.33 +1.0
49,952 - MPMX26_00046 0.33 +1.2
49,959 - MPMX26_00046 0.34 +0.9
49,959 - MPMX26_00046 0.34 +0.8
49,964 - MPMX26_00046 0.35 +1.3
49,989 - MPMX26_00046 0.39 +0.6
49,989 - MPMX26_00046 0.39 +0.8
50,004 - MPMX26_00046 0.41 +0.4
50,004 - MPMX26_00046 0.41 +1.0
50,004 - MPMX26_00046 0.41 -0.3
50,004 - MPMX26_00046 0.41 +1.0
50,004 - MPMX26_00046 0.41 +0.7
50,004 - MPMX26_00046 0.41 +0.8
50,004 - MPMX26_00046 0.41 +0.5
50,004 - MPMX26_00046 0.41 +0.5
50,004 - MPMX26_00046 0.41 +0.7
50,004 - MPMX26_00046 0.41 +0.7
50,004 - MPMX26_00046 0.41 +0.4
50,004 - MPMX26_00046 0.41 +1.0
50,043 - MPMX26_00046 0.46 +1.2
50,043 - MPMX26_00046 0.46 +0.6
50,043 - MPMX26_00046 0.46 +0.8
50,043 - MPMX26_00046 0.46 +0.6
50,043 - MPMX26_00046 0.46 +0.8
50,048 - MPMX26_00046 0.47 +1.0
50,145 - MPMX26_00046 0.61 +0.7
50,145 - MPMX26_00046 0.61 +1.0
50,145 - MPMX26_00046 0.61 +0.8
50,161 - MPMX26_00046 0.63 +0.9
50,166 - MPMX26_00046 0.64 +0.9
50,166 - MPMX26_00046 0.64 +0.8
50,168 - MPMX26_00046 0.64 +0.6
50,168 - MPMX26_00046 0.64 +0.8
50,168 - MPMX26_00046 0.64 +0.4
50,171 - MPMX26_00046 0.65 +0.8
50,182 - MPMX26_00046 0.66 +1.1
50,184 - MPMX26_00046 0.66 +0.6
50,184 - MPMX26_00046 0.66 +0.7
50,184 - MPMX26_00046 0.66 +0.9
50,193 - MPMX26_00046 0.68 +0.3
50,199 - MPMX26_00046 0.69 +0.9
50,204 - MPMX26_00046 0.69 -1.6
50,204 - MPMX26_00046 0.69 +0.5
50,204 - MPMX26_00046 0.69 +0.5
50,266 - MPMX26_00046 0.78 +0.8
50,272 - MPMX26_00046 0.79 +0.9
50,272 - MPMX26_00046 0.79 +0.4
50,274 - MPMX26_00046 0.79 +0.8
50,274 - MPMX26_00046 0.79 +0.5
50,274 - MPMX26_00046 0.79 +1.0
50,274 - MPMX26_00046 0.79 +1.0
50,274 - MPMX26_00046 0.79 +0.7
50,279 - MPMX26_00046 0.80 +0.7
50,302 - MPMX26_00046 0.83 +0.9
50,326 - MPMX26_00046 0.87 +1.4
50,370 - +0.2
50,372 - +0.8
50,372 - +0.5
50,372 - +0.4
50,372 - +0.8
50,372 - +0.8
50,372 - +1.6
50,372 - +0.4
50,372 - +0.9
50,372 - +1.3
50,372 - +0.9
50,372 - +1.1
50,372 - +0.8
50,372 - +0.5
50,372 - +1.2
50,372 - +0.5
50,372 - +0.4
50,372 - +0.5
50,372 - +0.7
50,372 - +0.4
50,372 - +0.1
50,372 - +0.5
50,372 - +0.9
50,372 - +0.7
50,372 - +0.8
50,372 - +0.8
50,377 - +0.9
50,392 - +1.0
50,404 - +0.5
50,404 - +1.2
50,411 - +0.6
50,411 - +0.8
50,411 - +0.7
50,426 - +1.7
50,426 - +0.9
50,434 - -0.5
50,498 - +0.9
50,569 - +0.8

Or see this region's nucleotide sequence