Strain Fitness in Escherichia coli ECRC101 around MCAODC_21335

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntyjdB and MCAODC_21325 are separated by 7 nucleotidesMCAODC_21325 and MCAODC_21330 overlap by 4 nucleotidesMCAODC_21330 and MCAODC_21335 are separated by 14 nucleotidesMCAODC_21335 and MCAODC_21340 are separated by 11 nucleotidesMCAODC_21340 and MCAODC_21345 are separated by 41 nucleotides MCAODC_21320: yjdB - phage tail protein, at 1,066,547 to 1,067,299 yjdB MCAODC_21325: MCAODC_21325 - phage tail protein, at 1,067,307 to 1,067,702 _21325 MCAODC_21330: MCAODC_21330 - phage tail protein, at 1,067,699 to 1,068,232 _21330 MCAODC_21335: MCAODC_21335 - phage tail protein, at 1,068,247 to 1,068,600 _21335 MCAODC_21340: MCAODC_21340 - DNA-packaging protein FI, at 1,068,612 to 1,069,010 _21340 MCAODC_21345: MCAODC_21345 - Major capsid protein, at 1,069,052 to 1,070,077 _21345 Position (kb) 1068 1069Strain fitness (log2 ratio) -2 -1 0 1at 1067.329 kb on + strandat 1067.330 kb on - strandat 1067.330 kb on - strandat 1067.352 kb on + strand, within MCAODC_21325at 1067.393 kb on + strand, within MCAODC_21325at 1067.513 kb on + strand, within MCAODC_21325at 1067.514 kb on - strand, within MCAODC_21325at 1067.534 kb on + strand, within MCAODC_21325at 1067.560 kb on + strand, within MCAODC_21325at 1067.561 kb on - strand, within MCAODC_21325at 1067.561 kb on - strand, within MCAODC_21325at 1067.561 kb on - strand, within MCAODC_21325at 1067.694 kb on - strandat 1067.720 kb on - strandat 1067.739 kb on + strandat 1067.906 kb on - strand, within MCAODC_21330at 1067.938 kb on + strand, within MCAODC_21330at 1067.943 kb on - strand, within MCAODC_21330at 1067.984 kb on - strand, within MCAODC_21330at 1068.297 kb on - strand, within MCAODC_21335

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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1,067,329 + -0.4
1,067,330 - +0.8
1,067,330 - +0.8
1,067,352 + MCAODC_21325 0.11 -1.2
1,067,393 + MCAODC_21325 0.22 +0.2
1,067,513 + MCAODC_21325 0.52 +0.5
1,067,514 - MCAODC_21325 0.52 -0.1
1,067,534 + MCAODC_21325 0.57 +0.4
1,067,560 + MCAODC_21325 0.64 +1.4
1,067,561 - MCAODC_21325 0.64 +0.2
1,067,561 - MCAODC_21325 0.64 +0.5
1,067,561 - MCAODC_21325 0.64 -0.2
1,067,694 - -0.1
1,067,720 - -0.3
1,067,739 + +0.2
1,067,906 - MCAODC_21330 0.39 -1.2
1,067,938 + MCAODC_21330 0.45 -2.2
1,067,943 - MCAODC_21330 0.46 -0.5
1,067,984 - MCAODC_21330 0.53 +0.8
1,068,297 - MCAODC_21335 0.14 -0.2

Or see this region's nucleotide sequence