Strain Fitness in Escherichia coli ECRC101 around MCAODC_20010

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMCAODC_20000 and MCAODC_20005 are separated by 42 nucleotidesMCAODC_20005 and MCAODC_20010 are separated by 4 nucleotidesMCAODC_20010 and tnp-IS3 are separated by 319 nucleotidestnp-IS3 and tnp-IS3 overlap by 1 nucleotides MCAODC_20000: MCAODC_20000 - SAR-endolysin, at 821,285 to 821,818 _20000 MCAODC_20005: MCAODC_20005 - DUF1327 domain-containing protein, at 821,861 to 822,193 _20005 MCAODC_20010: MCAODC_20010 - lysis protein, at 822,198 to 822,404 _20010 MCAODC_20015: tnp-IS3 - IS3 family transposase, at 822,724 to 823,050 tnp-IS3 MCAODC_20020: tnp-IS3 - IS3 family transposase, at 823,050 to 823,937 tnp-IS3 Position (kb) 822 823Strain fitness (log2 ratio) -2 -1 0 1 2 3at 821.346 kb on + strand, within MCAODC_20000at 821.539 kb on + strand, within MCAODC_20000at 821.569 kb on + strand, within MCAODC_20000at 821.694 kb on + strand, within MCAODC_20000at 822.444 kb on + strandat 822.570 kb on - strandat 822.582 kb on - strandat 822.582 kb on - strandat 822.582 kb on - strandat 822.628 kb on + strandat 822.628 kb on + strandat 822.630 kb on + strandat 822.630 kb on + strandat 822.630 kb on + strandat 822.630 kb on + strandat 822.630 kb on + strandat 822.630 kb on + strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.631 kb on - strandat 822.634 kb on + strandat 822.634 kb on + strandat 822.634 kb on + strandat 822.634 kb on + strandat 822.635 kb on - strandat 822.635 kb on - strandat 822.635 kb on - strandat 822.635 kb on - strandat 822.652 kb on + strandat 822.652 kb on + strandat 822.653 kb on - strandat 822.661 kb on + strandat 822.697 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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821,346 + MCAODC_20000 0.11 +3.4
821,539 + MCAODC_20000 0.48 -1.0
821,569 + MCAODC_20000 0.53 +1.9
821,694 + MCAODC_20000 0.77 +0.1
822,444 + +0.9
822,570 - -1.0
822,582 - +0.6
822,582 - -2.2
822,582 - +1.9
822,628 + +0.5
822,628 + -0.2
822,630 + +0.5
822,630 + -0.3
822,630 + -1.5
822,630 + +1.9
822,630 + -0.5
822,630 + -0.1
822,631 - -0.1
822,631 - +0.0
822,631 - -1.2
822,631 - -1.1
822,631 - -1.6
822,631 - +0.1
822,631 - -0.1
822,634 + -0.1
822,634 + +2.2
822,634 + -0.3
822,634 + +1.9
822,635 - -0.7
822,635 - -1.0
822,635 - +1.3
822,635 - -2.1
822,652 + +0.3
822,652 + +0.3
822,653 - -0.5
822,661 + -1.0
822,697 - -1.5

Or see this region's nucleotide sequence