Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ydhQ and Val_trna are separated by 307 nucleotides Val_trna and Val_trna are separated by 4 nucleotides Val_trna and ydhR are separated by 107 nucleotides ydhR and ydhS are separated by 125 nucleotides
MCAODC_18055: ydhQ - Uncharacterized protein YdhQ, at 473,851 to 475,107
ydhQ
MCAODC_18060: Val_trna - tRNA-Val(gac), at 475,415 to 475,491
_trna
MCAODC_18065: Val_trna - tRNA-Val(gac), at 475,496 to 475,572
_trna
MCAODC_18075: ydhR - monooxygenase, at 475,680 to 475,985
ydhR
MCAODC_18080: ydhS - FAD-NAD(P)-binding protein, at 476,111 to 477,715
ydhS
Position (kb) 475
476 Strain fitness (log2 ratio) -1
0
1
2
3 at 474.438 kb on - strand, within ydhQ at 474.468 kb on - strand, within ydhQ at 474.489 kb on + strand, within ydhQ at 474.490 kb on - strand, within ydhQ at 474.543 kb on + strand, within ydhQ at 474.544 kb on - strand, within ydhQ at 474.544 kb on - strand, within ydhQ at 474.544 kb on - strand, within ydhQ at 474.644 kb on - strand, within ydhQ at 474.644 kb on - strand, within ydhQ at 474.770 kb on + strand, within ydhQ at 474.770 kb on + strand, within ydhQ at 474.771 kb on - strand, within ydhQ at 474.771 kb on - strand, within ydhQ at 474.829 kb on - strand, within ydhQ at 474.837 kb on + strand, within ydhQ at 474.915 kb on - strand, within ydhQ at 474.915 kb on - strand, within ydhQ at 475.024 kb on - strand at 475.024 kb on - strand at 475.139 kb on + strand at 475.145 kb on + strand at 475.146 kb on - strand at 475.146 kb on - strand at 475.149 kb on + strand at 475.334 kb on + strand at 475.406 kb on + strand at 475.406 kb on + strand at 475.422 kb on + strand at 475.641 kb on + strand at 475.641 kb on + strand at 475.748 kb on + strand, within ydhR at 476.106 kb on + strand at 476.173 kb on - strand at 476.279 kb on - strand, within ydhS
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 474,438 - ydhQ MCAODC_18055 0.47 -1.5 474,468 - ydhQ MCAODC_18055 0.49 +1.2 474,489 + ydhQ MCAODC_18055 0.51 -0.2 474,490 - ydhQ MCAODC_18055 0.51 -0.2 474,543 + ydhQ MCAODC_18055 0.55 +0.8 474,544 - ydhQ MCAODC_18055 0.55 +2.8 474,544 - ydhQ MCAODC_18055 0.55 +0.2 474,544 - ydhQ MCAODC_18055 0.55 +0.6 474,644 - ydhQ MCAODC_18055 0.63 +2.8 474,644 - ydhQ MCAODC_18055 0.63 +0.5 474,770 + ydhQ MCAODC_18055 0.73 +1.1 474,770 + ydhQ MCAODC_18055 0.73 -0.4 474,771 - ydhQ MCAODC_18055 0.73 -0.1 474,771 - ydhQ MCAODC_18055 0.73 +3.4 474,829 - ydhQ MCAODC_18055 0.78 +1.0 474,837 + ydhQ MCAODC_18055 0.78 -0.9 474,915 - ydhQ MCAODC_18055 0.85 -1.2 474,915 - ydhQ MCAODC_18055 0.85 -0.2 475,024 - +1.7 475,024 - -0.2 475,139 + +1.2 475,145 + +0.5 475,146 - +0.1 475,146 - +0.2 475,149 + +2.4 475,334 + +2.4 475,406 + +0.2 475,406 + +0.0 475,422 + -0.8 475,641 + +0.2 475,641 + +2.1 475,748 + ydhR MCAODC_18075 0.22 +0.8 476,106 + -0.8 476,173 - +1.1 476,279 - ydhS MCAODC_18080 0.10 -0.6
Or see this region's nucleotide sequence