Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt asr and ydgU are separated by 92 nucleotides ydgU and ydgD are separated by 99 nucleotides ydgD and mdtI are separated by 38 nucleotides mdtI and mdtJ overlap by 14 nucleotides
MCAODC_17685: asr - acid resistance repetitive basic protein Asr, at 400,446 to 400,754
asr
MCAODC_17690: ydgU - Uncharacterized protein YdgU, at 400,847 to 400,930
ydgU
MCAODC_17695: ydgD - Uncharacterized serine protease YdgD, at 401,030 to 401,851
ydgD
MCAODC_17700: mdtI - multidrug/spermidine efflux SMR transporter subunit MdtI, at 401,890 to 402,219
mdtI
MCAODC_17705: mdtJ - multidrug/spermidine efflux SMR transporter subunit MdtJ, at 402,206 to 402,571
mdtJ
Position (kb) 401
402 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 400.087 kb on - strand at 400.150 kb on - strand at 400.150 kb on - strand at 400.152 kb on - strand at 400.152 kb on - strand at 400.152 kb on - strand at 400.152 kb on - strand at 400.152 kb on - strand at 400.192 kb on + strand at 400.193 kb on - strand at 400.232 kb on - strand at 400.256 kb on - strand at 400.260 kb on - strand at 400.292 kb on + strand at 400.312 kb on - strand at 400.329 kb on + strand at 400.329 kb on + strand at 400.385 kb on + strand at 400.385 kb on + strand at 400.386 kb on - strand at 400.387 kb on + strand at 400.387 kb on + strand at 400.387 kb on + strand at 400.387 kb on + strand at 400.388 kb on - strand at 400.416 kb on + strand at 400.457 kb on - strand at 400.637 kb on + strand, within asr at 400.880 kb on - strand, within ydgU at 400.975 kb on - strand at 400.983 kb on + strand at 400.983 kb on + strand at 400.999 kb on + strand at 401.000 kb on - strand at 401.002 kb on + strand at 401.009 kb on - strand at 401.012 kb on + strand at 401.012 kb on + strand at 401.035 kb on + strand at 401.035 kb on + strand at 401.035 kb on + strand at 401.036 kb on - strand at 401.036 kb on - strand at 401.232 kb on + strand, within ydgD at 401.376 kb on + strand, within ydgD at 401.439 kb on + strand, within ydgD at 401.440 kb on - strand, within ydgD at 401.481 kb on + strand, within ydgD at 401.518 kb on - strand, within ydgD at 401.530 kb on + strand, within ydgD at 401.616 kb on - strand, within ydgD at 401.739 kb on + strand, within ydgD at 401.740 kb on - strand, within ydgD at 402.027 kb on - strand, within mdtI at 402.027 kb on - strand, within mdtI at 402.276 kb on - strand, within mdtJ at 402.402 kb on - strand, within mdtJ at 402.434 kb on + strand, within mdtJ at 402.568 kb on - strand at 402.662 kb on + strand at 402.662 kb on + strand at 402.662 kb on + strand at 402.663 kb on - strand at 402.783 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 400,087 - +1.4 400,150 - +0.2 400,150 - +0.3 400,152 - -0.8 400,152 - +2.2 400,152 - +0.6 400,152 - -0.3 400,152 - +0.8 400,192 + -0.8 400,193 - -0.5 400,232 - -2.6 400,256 - +1.6 400,260 - +1.1 400,292 + +0.8 400,312 - -0.8 400,329 + -0.7 400,329 + +1.2 400,385 + +0.8 400,385 + -1.2 400,386 - -0.5 400,387 + -0.8 400,387 + -0.7 400,387 + +1.8 400,387 + -1.2 400,388 - -0.1 400,416 + +1.3 400,457 - -0.9 400,637 + asr MCAODC_17685 0.62 +0.2 400,880 - ydgU MCAODC_17690 0.39 +1.5 400,975 - -1.2 400,983 + +0.8 400,983 + +0.8 400,999 + -0.5 401,000 - +1.5 401,002 + +2.2 401,009 - +2.5 401,012 + +1.8 401,012 + +0.5 401,035 + -1.4 401,035 + +1.2 401,035 + +3.8 401,036 - -1.0 401,036 - -1.8 401,232 + ydgD MCAODC_17695 0.25 +0.8 401,376 + ydgD MCAODC_17695 0.42 +0.8 401,439 + ydgD MCAODC_17695 0.50 -0.2 401,440 - ydgD MCAODC_17695 0.50 -1.9 401,481 + ydgD MCAODC_17695 0.55 -0.1 401,518 - ydgD MCAODC_17695 0.59 +1.6 401,530 + ydgD MCAODC_17695 0.61 +0.6 401,616 - ydgD MCAODC_17695 0.71 -1.0 401,739 + ydgD MCAODC_17695 0.86 +1.8 401,740 - ydgD MCAODC_17695 0.86 -1.0 402,027 - mdtI MCAODC_17700 0.42 +1.3 402,027 - mdtI MCAODC_17700 0.42 +0.8 402,276 - mdtJ MCAODC_17705 0.19 +2.8 402,402 - mdtJ MCAODC_17705 0.54 +2.2 402,434 + mdtJ MCAODC_17705 0.62 -0.4 402,568 - +0.6 402,662 + -0.1 402,662 + -0.1 402,662 + +0.8 402,663 - +1.8 402,783 - +1.2
Or see this region's nucleotide sequence