Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ftrA and mgtS are separated by 107 nucleotides mgtS and dgcZ are separated by 218 nucleotides dgcZ and ydeI are separated by 254 nucleotides ydeI and ydeJ are separated by 275 nucleotides
MCAODC_16875: ftrA - transcriptional regulator FtrA, at 285,035 to 286,006
ftrA
MCAODC_16880: mgtS - protein MgtS, at 286,114 to 286,209
mgtS
MCAODC_16890: dgcZ - diguanylate cyclase DgcZ, at 286,428 to 287,318
dgcZ
MCAODC_16895: ydeI - YdeI family stress tolerance OB fold protein, at 287,573 to 287,965
ydeI
MCAODC_16900: ydeJ - 2-oxo-tetronate isomerase, at 288,241 to 288,759
ydeJ
Position (kb) 286
287
288 Strain fitness (log2 ratio) -2
-1
0
1
2 at 285.488 kb on + strand, within ftrA at 285.553 kb on + strand, within ftrA at 285.688 kb on - strand, within ftrA at 285.733 kb on + strand, within ftrA at 286.042 kb on + strand at 286.046 kb on - strand at 286.046 kb on - strand at 286.112 kb on + strand at 286.112 kb on + strand at 286.113 kb on - strand at 286.125 kb on + strand, within mgtS at 286.145 kb on + strand, within mgtS at 286.220 kb on + strand at 286.220 kb on + strand at 286.257 kb on + strand at 286.490 kb on + strand at 286.586 kb on + strand, within dgcZ at 286.624 kb on - strand, within dgcZ at 286.765 kb on - strand, within dgcZ at 286.768 kb on - strand, within dgcZ at 286.768 kb on - strand, within dgcZ at 286.837 kb on - strand, within dgcZ at 286.960 kb on + strand, within dgcZ at 287.043 kb on - strand, within dgcZ at 287.076 kb on - strand, within dgcZ at 287.076 kb on - strand, within dgcZ at 287.108 kb on - strand, within dgcZ at 287.174 kb on - strand, within dgcZ at 287.251 kb on + strand at 287.517 kb on - strand at 287.701 kb on + strand, within ydeI at 287.769 kb on - strand, within ydeI at 287.769 kb on - strand, within ydeI at 288.076 kb on - strand at 288.214 kb on + strand at 288.214 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 285,488 + ftrA MCAODC_16875 0.47 -0.6 285,553 + ftrA MCAODC_16875 0.53 -0.6 285,688 - ftrA MCAODC_16875 0.67 +1.8 285,733 + ftrA MCAODC_16875 0.72 -0.2 286,042 + +0.0 286,046 - -2.6 286,046 - +1.2 286,112 + -1.0 286,112 + -1.9 286,113 - -0.2 286,125 + mgtS MCAODC_16880 0.11 -0.9 286,145 + mgtS MCAODC_16880 0.32 +1.8 286,220 + +0.7 286,220 + -1.8 286,257 + -1.6 286,490 + +0.2 286,586 + dgcZ MCAODC_16890 0.18 +0.8 286,624 - dgcZ MCAODC_16890 0.22 +1.8 286,765 - dgcZ MCAODC_16890 0.38 +0.2 286,768 - dgcZ MCAODC_16890 0.38 +1.0 286,768 - dgcZ MCAODC_16890 0.38 +1.8 286,837 - dgcZ MCAODC_16890 0.46 +1.8 286,960 + dgcZ MCAODC_16890 0.60 +0.8 287,043 - dgcZ MCAODC_16890 0.69 -0.4 287,076 - dgcZ MCAODC_16890 0.73 +1.8 287,076 - dgcZ MCAODC_16890 0.73 +1.8 287,108 - dgcZ MCAODC_16890 0.76 -0.4 287,174 - dgcZ MCAODC_16890 0.84 -0.2 287,251 + -1.0 287,517 - -0.4 287,701 + ydeI MCAODC_16895 0.33 +0.8 287,769 - ydeI MCAODC_16895 0.50 -0.9 287,769 - ydeI MCAODC_16895 0.50 +0.8 288,076 - +0.9 288,214 + -0.8 288,214 + +1.5
Or see this region's nucleotide sequence