Strain Fitness in Escherichia coli ECRC101 around MCAODC_15780

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntadeB and tolC are separated by 22 nucleotidestolC and araJ are separated by 8 nucleotides MCAODC_15775: adeB - hydrophobe/amphiphile efflux-1 family RND transporter, at 44,040 to 47,129 adeB MCAODC_15780: tolC - multidrug transporter, at 47,152 to 48,525 tolC MCAODC_15785: araJ - Bcr/CflA family drug resistance efflux transporter, at 48,534 to 49,697 araJ Position (kb) 47 48 49Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 46.214 kb on + strand, within adeBat 46.214 kb on + strand, within adeBat 46.214 kb on + strand, within adeBat 46.215 kb on - strand, within adeBat 46.215 kb on - strand, within adeBat 46.220 kb on + strand, within adeBat 46.223 kb on + strand, within adeBat 46.223 kb on + strand, within adeBat 46.223 kb on + strand, within adeBat 46.223 kb on + strand, within adeBat 46.227 kb on - strand, within adeBat 46.293 kb on - strand, within adeBat 46.296 kb on + strand, within adeBat 46.296 kb on + strand, within adeBat 46.296 kb on + strand, within adeBat 46.297 kb on - strand, within adeBat 46.385 kb on + strand, within adeBat 46.404 kb on - strand, within adeBat 46.479 kb on + strand, within adeBat 46.480 kb on - strand, within adeBat 46.653 kb on + strand, within adeBat 46.698 kb on + strand, within adeBat 46.893 kb on + strandat 47.102 kb on + strandat 47.151 kb on + strandat 47.151 kb on + strandat 47.151 kb on + strandat 47.152 kb on - strandat 47.218 kb on + strandat 47.338 kb on - strand, within tolCat 47.338 kb on - strand, within tolCat 47.404 kb on + strand, within tolCat 47.405 kb on - strand, within tolCat 47.416 kb on - strand, within tolCat 47.427 kb on - strand, within tolCat 47.526 kb on + strand, within tolCat 47.531 kb on + strand, within tolCat 47.531 kb on + strand, within tolCat 47.532 kb on - strand, within tolCat 47.559 kb on - strand, within tolCat 47.618 kb on + strand, within tolCat 47.821 kb on + strand, within tolCat 47.930 kb on + strand, within tolCat 47.930 kb on + strand, within tolCat 47.930 kb on + strand, within tolCat 47.931 kb on - strand, within tolCat 47.931 kb on - strand, within tolCat 48.000 kb on + strand, within tolCat 48.000 kb on + strand, within tolCat 48.001 kb on - strand, within tolCat 48.138 kb on + strand, within tolCat 48.326 kb on - strand, within tolCat 48.330 kb on + strand, within tolCat 48.391 kb on + strandat 48.391 kb on + strandat 48.534 kb on - strandat 48.610 kb on - strandat 48.670 kb on + strand, within araJat 48.739 kb on + strand, within araJat 48.772 kb on + strand, within araJat 48.780 kb on - strand, within araJat 48.815 kb on + strand, within araJat 48.815 kb on + strand, within araJat 48.842 kb on + strand, within araJat 48.887 kb on + strand, within araJat 48.903 kb on + strand, within araJat 49.031 kb on - strand, within araJat 49.076 kb on + strand, within araJat 49.206 kb on + strand, within araJat 49.206 kb on + strand, within araJat 49.340 kb on + strand, within araJat 49.447 kb on + strand, within araJat 49.502 kb on + strand, within araJat 49.513 kb on + strand, within araJ

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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46,214 + adeB MCAODC_15775 0.70 -2.8
46,214 + adeB MCAODC_15775 0.70 +0.2
46,214 + adeB MCAODC_15775 0.70 +0.0
46,215 - adeB MCAODC_15775 0.70 +0.7
46,215 - adeB MCAODC_15775 0.70 -1.4
46,220 + adeB MCAODC_15775 0.71 -0.5
46,223 + adeB MCAODC_15775 0.71 -1.2
46,223 + adeB MCAODC_15775 0.71 -2.2
46,223 + adeB MCAODC_15775 0.71 +0.4
46,223 + adeB MCAODC_15775 0.71 +1.7
46,227 - adeB MCAODC_15775 0.71 +0.7
46,293 - adeB MCAODC_15775 0.73 -0.9
46,296 + adeB MCAODC_15775 0.73 +0.1
46,296 + adeB MCAODC_15775 0.73 -0.5
46,296 + adeB MCAODC_15775 0.73 -0.9
46,297 - adeB MCAODC_15775 0.73 +0.3
46,385 + adeB MCAODC_15775 0.76 +0.7
46,404 - adeB MCAODC_15775 0.77 -0.5
46,479 + adeB MCAODC_15775 0.79 +1.5
46,480 - adeB MCAODC_15775 0.79 -1.4
46,653 + adeB MCAODC_15775 0.85 +1.7
46,698 + adeB MCAODC_15775 0.86 +0.0
46,893 + +1.0
47,102 + -1.1
47,151 + -0.8
47,151 + +0.8
47,151 + +2.2
47,152 - +1.7
47,218 + -0.6
47,338 - tolC MCAODC_15780 0.14 -1.0
47,338 - tolC MCAODC_15780 0.14 +0.1
47,404 + tolC MCAODC_15780 0.18 +2.4
47,405 - tolC MCAODC_15780 0.18 +4.0
47,416 - tolC MCAODC_15780 0.19 +0.7
47,427 - tolC MCAODC_15780 0.20 +1.7
47,526 + tolC MCAODC_15780 0.27 -1.6
47,531 + tolC MCAODC_15780 0.28 +0.7
47,531 + tolC MCAODC_15780 0.28 +0.7
47,532 - tolC MCAODC_15780 0.28 +0.9
47,559 - tolC MCAODC_15780 0.30 -0.1
47,618 + tolC MCAODC_15780 0.34 -1.0
47,821 + tolC MCAODC_15780 0.49 -0.6
47,930 + tolC MCAODC_15780 0.57 -0.2
47,930 + tolC MCAODC_15780 0.57 +1.3
47,930 + tolC MCAODC_15780 0.57 +0.2
47,931 - tolC MCAODC_15780 0.57 +1.7
47,931 - tolC MCAODC_15780 0.57 +1.7
48,000 + tolC MCAODC_15780 0.62 +0.1
48,000 + tolC MCAODC_15780 0.62 +1.7
48,001 - tolC MCAODC_15780 0.62 +1.7
48,138 + tolC MCAODC_15780 0.72 -1.5
48,326 - tolC MCAODC_15780 0.85 +1.2
48,330 + tolC MCAODC_15780 0.86 +1.5
48,391 + +1.4
48,391 + -2.6
48,534 - +3.3
48,610 - +0.7
48,670 + araJ MCAODC_15785 0.12 -0.1
48,739 + araJ MCAODC_15785 0.18 +0.1
48,772 + araJ MCAODC_15785 0.20 -0.1
48,780 - araJ MCAODC_15785 0.21 -0.5
48,815 + araJ MCAODC_15785 0.24 +1.7
48,815 + araJ MCAODC_15785 0.24 +1.3
48,842 + araJ MCAODC_15785 0.26 +0.3
48,887 + araJ MCAODC_15785 0.30 +0.5
48,903 + araJ MCAODC_15785 0.32 +0.1
49,031 - araJ MCAODC_15785 0.43 -1.7
49,076 + araJ MCAODC_15785 0.47 +1.3
49,206 + araJ MCAODC_15785 0.58 +1.3
49,206 + araJ MCAODC_15785 0.58 +0.2
49,340 + araJ MCAODC_15785 0.69 +1.3
49,447 + araJ MCAODC_15785 0.78 -0.8
49,502 + araJ MCAODC_15785 0.83 -0.5
49,513 + araJ MCAODC_15785 0.84 +0.7

Or see this region's nucleotide sequence