Strain Fitness in Escherichia coli ECRC101 around MCAODC_08535

Experiment: TP9

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntmurA and sfsB are separated by 47 nucleotidessfsB and ispB are separated by 228 nucleotidesispB and rplU are separated by 258 nucleotidesrplU and rpmA are separated by 20 nucleotidesrpmA and yhbE are separated by 126 nucleotides MCAODC_08525: murA - UDP-N-acetylglucosamine 1-carboxyvinyltransferase, at 1,707,348 to 1,708,607 murA MCAODC_08530: sfsB - DNA-binding transcriptional regulator SfsB, at 1,708,655 to 1,708,933 sfsB MCAODC_08535: ispB - octaprenyl diphosphate synthase, at 1,709,162 to 1,710,133 ispB MCAODC_08540: rplU - 50S ribosomal protein L21, at 1,710,392 to 1,710,703 rplU MCAODC_08545: rpmA - 50S ribosomal protein L27, at 1,710,724 to 1,710,981 rpmA MCAODC_08550: yhbE - Uncharacterized inner membrane transporter YhbE, at 1,711,108 to 1,712,073 yhbE Position (kb) 1709 1710 1711Strain fitness (log2 ratio) -2 -1 0 1 2 3at 1708.606 kb on - strandat 1708.674 kb on + strandat 1708.674 kb on + strandat 1708.674 kb on + strandat 1708.674 kb on + strandat 1708.675 kb on - strandat 1708.679 kb on - strandat 1708.679 kb on - strandat 1708.777 kb on + strand, within sfsBat 1708.777 kb on + strand, within sfsBat 1708.925 kb on - strandat 1708.925 kb on - strandat 1708.949 kb on - strandat 1708.954 kb on - strandat 1708.994 kb on + strandat 1708.995 kb on - strandat 1708.996 kb on + strandat 1709.032 kb on - strandat 1709.065 kb on + strandat 1709.065 kb on + strandat 1709.065 kb on + strandat 1709.065 kb on + strandat 1709.120 kb on - strandat 1710.167 kb on - strandat 1710.167 kb on - strandat 1710.187 kb on - strandat 1710.194 kb on - strandat 1710.194 kb on - strandat 1710.194 kb on - strandat 1710.194 kb on - strandat 1710.194 kb on - strandat 1710.206 kb on - strandat 1710.206 kb on - strandat 1710.206 kb on - strandat 1710.206 kb on - strandat 1710.206 kb on - strandat 1710.208 kb on - strandat 1710.208 kb on - strandat 1710.238 kb on + strandat 1710.239 kb on - strandat 1710.239 kb on - strandat 1710.251 kb on - strandat 1710.277 kb on - strandat 1710.285 kb on + strandat 1710.285 kb on + strandat 1710.285 kb on + strandat 1710.286 kb on - strandat 1710.286 kb on - strandat 1710.286 kb on - strandat 1711.036 kb on + strandat 1711.036 kb on + strandat 1711.036 kb on + strandat 1711.075 kb on + strandat 1711.102 kb on + strandat 1711.102 kb on + strandat 1711.103 kb on - strandat 1711.103 kb on - strandat 1711.103 kb on - strandat 1711.107 kb on + strandat 1711.107 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction TP9
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1,708,606 - +0.1
1,708,674 + -0.5
1,708,674 + +0.2
1,708,674 + -0.8
1,708,674 + -2.3
1,708,675 - +0.2
1,708,679 - -0.6
1,708,679 - +2.2
1,708,777 + sfsB MCAODC_08530 0.44 +0.8
1,708,777 + sfsB MCAODC_08530 0.44 -0.3
1,708,925 - -0.3
1,708,925 - +1.4
1,708,949 - -0.6
1,708,954 - -0.6
1,708,994 + -0.6
1,708,995 - +0.9
1,708,996 + -0.8
1,709,032 - +0.0
1,709,065 + -0.8
1,709,065 + +0.2
1,709,065 + +0.8
1,709,065 + +0.2
1,709,120 - +0.7
1,710,167 - +2.8
1,710,167 - -0.6
1,710,187 - -1.3
1,710,194 - -1.0
1,710,194 - -0.5
1,710,194 - -0.2
1,710,194 - -0.1
1,710,194 - +0.6
1,710,206 - +1.1
1,710,206 - +1.5
1,710,206 - +0.2
1,710,206 - +0.1
1,710,206 - -0.6
1,710,208 - -1.6
1,710,208 - +0.2
1,710,238 + -0.4
1,710,239 - +0.3
1,710,239 - -0.4
1,710,251 - +0.7
1,710,277 - -0.2
1,710,285 + -0.9
1,710,285 + +2.4
1,710,285 + -0.2
1,710,286 - +0.1
1,710,286 - -1.0
1,710,286 - -0.2
1,711,036 + +0.2
1,711,036 + +0.5
1,711,036 + +0.1
1,711,075 + +0.8
1,711,102 + +1.4
1,711,102 + -1.6
1,711,103 - +0.2
1,711,103 - +0.8
1,711,103 - +3.1
1,711,107 + +0.2
1,711,107 + -1.7

Or see this region's nucleotide sequence