Strain Fitness in Escherichia coli ECRC101 around MCAODC_05050

Experiment: TP9

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	TP9
1,016,497	+				+0.9
1,016,509	+				+2.9
1,016,510	-				+0.3
1,016,510	-				+1.1
1,016,510	-				-0.6
1,016,529	+				-1.4
1,016,529	+				+0.2
1,016,529	+				+0.4
1,016,560	+				-1.3
1,016,560	+				-0.7
1,016,560	+				-0.5
1,016,561	-				-0.4
1,016,561	-				-1.4
1,016,668	+	rffA	MCAODC_05050	0.15	+0.2
1,016,668	+	rffA	MCAODC_05050	0.15	-1.6
1,016,668	+	rffA	MCAODC_05050	0.15	+0.1
1,016,668	+	rffA	MCAODC_05050	0.15	+1.4
1,016,669	-	rffA	MCAODC_05050	0.15	-2.2
1,016,708	+	rffA	MCAODC_05050	0.18	-1.1
1,016,709	-	rffA	MCAODC_05050	0.19	-1.5
1,016,744	+	rffA	MCAODC_05050	0.22	-0.7
1,016,744	+	rffA	MCAODC_05050	0.22	-0.6
1,016,744	+	rffA	MCAODC_05050	0.22	-0.6
1,016,756	+	rffA	MCAODC_05050	0.23	+1.9
1,016,756	+	rffA	MCAODC_05050	0.23	-0.8
1,016,756	+	rffA	MCAODC_05050	0.23	-0.3
1,016,757	-	rffA	MCAODC_05050	0.23	+0.9
1,016,826	+	rffA	MCAODC_05050	0.29	-0.1
1,016,837	-	rffA	MCAODC_05050	0.30	-2.0
1,016,837	-	rffA	MCAODC_05050	0.30	-0.4
1,016,837	-	rffA	MCAODC_05050	0.30	+0.6
1,016,839	+	rffA	MCAODC_05050	0.30	+0.4
1,016,839	+	rffA	MCAODC_05050	0.30	-0.6
1,016,839	+	rffA	MCAODC_05050	0.30	-0.1
1,016,840	-	rffA	MCAODC_05050	0.30	+0.0
1,016,840	-	rffA	MCAODC_05050	0.30	+1.4
1,016,906	-	rffA	MCAODC_05050	0.36	-0.1
1,016,906	-	rffA	MCAODC_05050	0.36	-0.1
1,016,906	-	rffA	MCAODC_05050	0.36	-0.2
1,016,906	-	rffA	MCAODC_05050	0.36	-0.8
1,016,932	+	rffA	MCAODC_05050	0.38	+0.7
1,016,957	+	rffA	MCAODC_05050	0.40	+0.8
1,016,957	+	rffA	MCAODC_05050	0.40	+0.0
1,016,957	+	rffA	MCAODC_05050	0.40	-1.4
1,016,959	+	rffA	MCAODC_05050	0.41	-3.0
1,016,959	+	rffA	MCAODC_05050	0.41	-1.0
1,016,960	-	rffA	MCAODC_05050	0.41	-0.1
1,016,960	-	rffA	MCAODC_05050	0.41	+0.4
1,016,960	-	rffA	MCAODC_05050	0.41	+0.5
1,016,963	+	rffA	MCAODC_05050	0.41	-0.4
1,016,963	+	rffA	MCAODC_05050	0.41	-3.1
1,017,117	-	rffA	MCAODC_05050	0.55	+0.1
1,017,117	-	rffA	MCAODC_05050	0.55	-0.4
1,017,148	+	rffA	MCAODC_05050	0.57	+0.9
1,017,149	-	rffA	MCAODC_05050	0.57	-0.1
1,017,194	+	rffA	MCAODC_05050	0.61	-0.8
1,017,194	+	rffA	MCAODC_05050	0.61	+1.3
1,017,195	-	rffA	MCAODC_05050	0.62	-0.8
1,017,195	-	rffA	MCAODC_05050	0.62	-2.0
1,017,394	+	rffA	MCAODC_05050	0.79	-1.7
1,017,394	+	rffA	MCAODC_05050	0.79	-0.9
1,017,394	+	rffA	MCAODC_05050	0.79	+0.1
1,017,395	-	rffA	MCAODC_05050	0.79	-1.3
1,017,395	-	rffA	MCAODC_05050	0.79	+0.1
1,017,533	+				+0.3
1,017,581	+				-0.4
1,017,582	-				+0.6
1,017,582	-				-0.8
1,017,582	-				+2.2
1,017,582	-				-1.3
1,017,583	+				-0.4
1,017,584	-				+0.6
1,017,617	+				+0.3
1,017,641	+				-1.6
1,017,641	+				+0.1
1,017,641	+				-1.1
1,017,641	+				+1.9
1,017,641	+				+0.0
1,017,642	-				+0.6
1,017,642	-				+1.1
1,017,642	-				-1.4
1,017,642	-				-1.8
1,017,642	-				+0.7
1,017,643	+				-1.3
1,017,644	-				+0.2
1,017,664	+				-2.5
1,017,664	+				-0.4
1,017,664	+				+0.4
1,017,665	-				-0.1
1,017,665	-				+0.9
1,017,682	+				-0.9
1,017,682	+				-0.2
1,017,682	+				+0.3
1,017,682	+				-0.2
1,017,682	+				-0.5
1,017,682	+				-1.2
1,017,682	+				-0.3
1,017,682	+				-0.9
1,017,682	+				-0.4
1,017,682	+				-0.8
1,017,683	-				-0.8
1,017,683	-				-0.6
1,017,683	-				-0.9
1,017,683	-				-0.7
1,017,683	-				+0.4
1,017,683	-				+1.1
1,017,683	-				-0.3
1,017,683	-				+1.3
1,017,683	-				-0.4
1,017,683	-				+1.9
1,017,683	-				-1.1
1,017,683	-				-0.7
1,017,687	-				-1.3
1,017,687	-				-1.0
1,017,687	-				-0.1
1,017,687	-				+0.6
1,017,694	-				+0.5
1,017,753	-	rffC	MCAODC_05055	0.18	+2.5
1,017,829	-	rffC	MCAODC_05055	0.29	-0.4
1,017,854	+	rffC	MCAODC_05055	0.33	-0.6
1,017,855	-	rffC	MCAODC_05055	0.33	-1.1
1,017,855	-	rffC	MCAODC_05055	0.33	-0.4
1,017,883	+	rffC	MCAODC_05055	0.37	-1.1
1,017,883	+	rffC	MCAODC_05055	0.37	-0.6
1,017,941	+	rffC	MCAODC_05055	0.45	-1.0
1,017,941	+	rffC	MCAODC_05055	0.45	-1.4
1,017,941	+	rffC	MCAODC_05055	0.45	-0.1
1,017,941	+	rffC	MCAODC_05055	0.45	-0.9
1,017,942	-	rffC	MCAODC_05055	0.46	-1.1
1,018,013	-	rffC	MCAODC_05055	0.56	+1.7
1,018,021	+	rffC	MCAODC_05055	0.57	+1.9
1,018,022	-	rffC	MCAODC_05055	0.57	-1.1
1,018,052	-	rffC	MCAODC_05055	0.62	+0.4
1,018,062	+	rffC	MCAODC_05055	0.63	-1.4
1,018,108	+	rffC	MCAODC_05055	0.70	-0.1
1,018,108	+	rffC	MCAODC_05055	0.70	-0.7
1,018,109	-	rffC	MCAODC_05055	0.70	+0.7
1,018,152	+	rffC	MCAODC_05055	0.77	-0.8
1,018,153	-	rffC	MCAODC_05055	0.77	+0.3
1,018,230	+	rffC	MCAODC_05055	0.88	+1.1
1,018,230	+	rffC	MCAODC_05055	0.88	-0.4
1,018,230	+	rffC	MCAODC_05055	0.88	-0.6
1,018,231	-	rffC	MCAODC_05055	0.88	+0.1
1,018,231	-	rffC	MCAODC_05055	0.88	-0.3
1,018,231	-	rffC	MCAODC_05055	0.88	-0.9
1,018,231	-	rffC	MCAODC_05055	0.88	+0.9
1,018,251	+				+0.0
1,018,314	-				-0.8
1,018,430	-	rfbA	MCAODC_05060	0.16	-1.3
1,018,457	+	rfbA	MCAODC_05060	0.19	-0.6
1,018,458	-	rfbA	MCAODC_05060	0.20	-0.7
1,018,458	-	rfbA	MCAODC_05060	0.20	-0.9
1,018,458	-	rfbA	MCAODC_05060	0.20	+0.3
1,018,557	+	rfbA	MCAODC_05060	0.31	-0.7
1,018,557	+	rfbA	MCAODC_05060	0.31	-0.5
1,018,557	+	rfbA	MCAODC_05060	0.31	-0.2
1,018,557	+	rfbA	MCAODC_05060	0.31	+2.1
1,018,558	-	rfbA	MCAODC_05060	0.31	+0.9
1,018,558	-	rfbA	MCAODC_05060	0.31	-0.5
1,018,558	-	rfbA	MCAODC_05060	0.31	-0.8
1,018,576	+	rfbA	MCAODC_05060	0.33	-1.8
1,018,577	-	rfbA	MCAODC_05060	0.33	-0.1