Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt melB and yihO are separated by 39 nucleotides yihO and ompL are separated by 0 nucleotides ompL and yihN are separated by 90 nucleotides
MCAODC_04555: melB - MFS/sugar transport protein, at 923,161 to 924,546
melB
MCAODC_04560: yihO - Putative sulfoquinovose importer, at 924,586 to 925,989
yihO
MCAODC_04565: ompL - porin OmpL, at 925,990 to 926,748
ompL
MCAODC_04570: yihN - Inner membrane protein YihN, at 926,839 to 928,104
yihN
Position (kb) 924
925
926 Strain fitness (log2 ratio) -2
-1
0
1
2 at 923.598 kb on + strand, within melB at 923.598 kb on + strand, within melB at 923.598 kb on + strand, within melB at 923.598 kb on + strand, within melB at 923.776 kb on - strand, within melB at 923.809 kb on + strand, within melB at 923.809 kb on + strand, within melB at 923.809 kb on + strand, within melB at 923.810 kb on - strand, within melB at 923.810 kb on - strand, within melB at 923.810 kb on - strand, within melB at 923.810 kb on - strand, within melB at 923.810 kb on - strand, within melB at 923.810 kb on - strand, within melB at 923.810 kb on - strand, within melB at 923.810 kb on - strand, within melB at 923.810 kb on - strand, within melB at 923.924 kb on + strand, within melB at 923.935 kb on - strand, within melB at 923.959 kb on + strand, within melB at 923.959 kb on + strand, within melB at 923.963 kb on - strand, within melB at 923.963 kb on - strand, within melB at 923.975 kb on + strand, within melB at 923.979 kb on + strand, within melB at 923.980 kb on - strand, within melB at 924.002 kb on - strand, within melB at 924.002 kb on - strand, within melB at 924.003 kb on + strand, within melB at 924.088 kb on + strand, within melB at 924.089 kb on - strand, within melB at 924.089 kb on - strand, within melB at 924.101 kb on + strand, within melB at 924.133 kb on + strand, within melB at 924.134 kb on - strand, within melB at 924.286 kb on + strand, within melB at 924.368 kb on - strand, within melB at 924.430 kb on + strand at 924.430 kb on + strand at 924.430 kb on + strand at 924.430 kb on + strand at 924.478 kb on + strand at 924.479 kb on - strand at 924.479 kb on - strand at 924.499 kb on + strand at 924.499 kb on + strand at 924.499 kb on + strand at 924.499 kb on + strand at 924.499 kb on + strand at 924.500 kb on - strand at 924.500 kb on - strand at 924.500 kb on - strand at 924.500 kb on - strand at 924.500 kb on - strand at 924.500 kb on - strand at 924.500 kb on - strand at 924.545 kb on - strand at 924.547 kb on + strand at 924.574 kb on + strand at 924.575 kb on - strand at 924.575 kb on - strand at 924.585 kb on + strand at 924.585 kb on + strand at 924.586 kb on - strand at 924.586 kb on - strand at 924.597 kb on + strand at 924.598 kb on - strand at 924.598 kb on - strand at 924.598 kb on - strand at 924.612 kb on - strand at 924.668 kb on + strand at 924.675 kb on + strand at 924.675 kb on + strand at 924.675 kb on + strand at 924.684 kb on + strand at 924.707 kb on - strand at 924.733 kb on + strand, within yihO at 924.733 kb on + strand, within yihO at 924.733 kb on + strand, within yihO at 924.733 kb on + strand, within yihO at 924.747 kb on + strand, within yihO at 924.852 kb on + strand, within yihO at 924.853 kb on - strand, within yihO at 924.853 kb on - strand, within yihO at 924.853 kb on - strand, within yihO at 924.858 kb on - strand, within yihO at 924.860 kb on - strand, within yihO at 924.882 kb on - strand, within yihO at 924.973 kb on + strand, within yihO at 924.974 kb on - strand, within yihO at 924.995 kb on - strand, within yihO at 925.076 kb on + strand, within yihO at 925.082 kb on + strand, within yihO at 925.082 kb on + strand, within yihO at 925.093 kb on - strand, within yihO at 925.093 kb on - strand, within yihO at 925.104 kb on + strand, within yihO at 925.104 kb on + strand, within yihO at 925.188 kb on + strand, within yihO at 925.188 kb on + strand, within yihO at 925.201 kb on + strand, within yihO at 925.223 kb on - strand, within yihO at 925.248 kb on + strand, within yihO at 925.248 kb on + strand, within yihO at 925.249 kb on - strand, within yihO at 925.258 kb on - strand, within yihO at 925.370 kb on - strand, within yihO at 925.392 kb on + strand, within yihO at 925.463 kb on + strand, within yihO at 925.464 kb on - strand, within yihO at 925.499 kb on + strand, within yihO at 925.540 kb on + strand, within yihO at 925.585 kb on - strand, within yihO at 925.611 kb on - strand, within yihO at 925.611 kb on - strand, within yihO at 925.646 kb on + strand, within yihO at 925.647 kb on - strand, within yihO at 925.651 kb on + strand, within yihO at 925.702 kb on + strand, within yihO at 925.704 kb on + strand, within yihO at 925.705 kb on - strand, within yihO at 925.705 kb on - strand, within yihO at 925.809 kb on - strand, within yihO at 925.917 kb on + strand at 925.986 kb on - strand at 926.143 kb on + strand, within ompL at 926.144 kb on - strand, within ompL at 926.145 kb on + strand, within ompL at 926.177 kb on + strand, within ompL at 926.178 kb on - strand, within ompL at 926.190 kb on + strand, within ompL at 926.214 kb on + strand, within ompL at 926.215 kb on - strand, within ompL at 926.226 kb on + strand, within ompL at 926.340 kb on + strand, within ompL at 926.385 kb on + strand, within ompL at 926.398 kb on - strand, within ompL at 926.442 kb on + strand, within ompL at 926.447 kb on - strand, within ompL at 926.492 kb on - strand, within ompL at 926.542 kb on - strand, within ompL at 926.564 kb on - strand, within ompL at 926.619 kb on + strand, within ompL at 926.620 kb on - strand, within ompL at 926.640 kb on + strand, within ompL at 926.659 kb on + strand, within ompL at 926.659 kb on + strand, within ompL at 926.659 kb on + strand, within ompL at 926.661 kb on + strand, within ompL at 926.662 kb on - strand, within ompL at 926.679 kb on - strand at 926.679 kb on - strand at 926.737 kb on + strand at 926.738 kb on - strand at 926.824 kb on - strand at 926.824 kb on - strand at 926.836 kb on + strand at 926.840 kb on + strand at 926.840 kb on + strand at 926.868 kb on + strand at 926.868 kb on + strand at 926.868 kb on + strand at 926.868 kb on + strand at 926.869 kb on - strand at 926.869 kb on - strand at 926.877 kb on + strand at 926.880 kb on + strand at 926.881 kb on - strand at 926.896 kb on + strand at 926.954 kb on + strand at 926.988 kb on - strand, within yihN at 926.988 kb on - strand, within yihN
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 923,598 + melB MCAODC_04555 0.32 -0.0 923,598 + melB MCAODC_04555 0.32 -0.1 923,598 + melB MCAODC_04555 0.32 -0.2 923,598 + melB MCAODC_04555 0.32 -2.4 923,776 - melB MCAODC_04555 0.44 -2.0 923,809 + melB MCAODC_04555 0.47 +0.6 923,809 + melB MCAODC_04555 0.47 +0.3 923,809 + melB MCAODC_04555 0.47 +1.6 923,810 - melB MCAODC_04555 0.47 +1.3 923,810 - melB MCAODC_04555 0.47 +1.9 923,810 - melB MCAODC_04555 0.47 +0.0 923,810 - melB MCAODC_04555 0.47 +0.9 923,810 - melB MCAODC_04555 0.47 -0.7 923,810 - melB MCAODC_04555 0.47 -0.7 923,810 - melB MCAODC_04555 0.47 +0.0 923,810 - melB MCAODC_04555 0.47 +1.9 923,810 - melB MCAODC_04555 0.47 +1.7 923,924 + melB MCAODC_04555 0.55 +0.9 923,935 - melB MCAODC_04555 0.56 +0.7 923,959 + melB MCAODC_04555 0.58 -0.0 923,959 + melB MCAODC_04555 0.58 +2.4 923,963 - melB MCAODC_04555 0.58 -0.7 923,963 - melB MCAODC_04555 0.58 +0.4 923,975 + melB MCAODC_04555 0.59 +0.0 923,979 + melB MCAODC_04555 0.59 -0.0 923,980 - melB MCAODC_04555 0.59 -0.9 924,002 - melB MCAODC_04555 0.61 +0.1 924,002 - melB MCAODC_04555 0.61 -0.7 924,003 + melB MCAODC_04555 0.61 +0.5 924,088 + melB MCAODC_04555 0.67 -0.5 924,089 - melB MCAODC_04555 0.67 +0.6 924,089 - melB MCAODC_04555 0.67 -1.5 924,101 + melB MCAODC_04555 0.68 -0.7 924,133 + melB MCAODC_04555 0.70 -0.2 924,134 - melB MCAODC_04555 0.70 -0.3 924,286 + melB MCAODC_04555 0.81 -0.1 924,368 - melB MCAODC_04555 0.87 +0.3 924,430 + +2.1 924,430 + -0.2 924,430 + +0.1 924,430 + +0.3 924,478 + +0.3 924,479 - -0.3 924,479 - -0.2 924,499 + +0.7 924,499 + +0.8 924,499 + -1.4 924,499 + -0.3 924,499 + -0.1 924,500 - +1.6 924,500 - -0.1 924,500 - -0.4 924,500 - +0.6 924,500 - -1.3 924,500 - -0.4 924,500 - +0.9 924,545 - +0.1 924,547 + +0.1 924,574 + -0.1 924,575 - -1.0 924,575 - +0.1 924,585 + -0.3 924,585 + -1.0 924,586 - +0.2 924,586 - -1.1 924,597 + +0.3 924,598 - -0.6 924,598 - +0.5 924,598 - +0.0 924,612 - -0.3 924,668 + -0.2 924,675 + -0.5 924,675 + -0.0 924,675 + -0.9 924,684 + -0.0 924,707 - -1.1 924,733 + yihO MCAODC_04560 0.10 +0.7 924,733 + yihO MCAODC_04560 0.10 -1.2 924,733 + yihO MCAODC_04560 0.10 +1.3 924,733 + yihO MCAODC_04560 0.10 +1.9 924,747 + yihO MCAODC_04560 0.11 +0.4 924,852 + yihO MCAODC_04560 0.19 +0.4 924,853 - yihO MCAODC_04560 0.19 +1.6 924,853 - yihO MCAODC_04560 0.19 -0.5 924,853 - yihO MCAODC_04560 0.19 +0.3 924,858 - yihO MCAODC_04560 0.19 -0.2 924,860 - yihO MCAODC_04560 0.20 -1.3 924,882 - yihO MCAODC_04560 0.21 -0.3 924,973 + yihO MCAODC_04560 0.28 -1.0 924,974 - yihO MCAODC_04560 0.28 +0.2 924,995 - yihO MCAODC_04560 0.29 -0.2 925,076 + yihO MCAODC_04560 0.35 +0.3 925,082 + yihO MCAODC_04560 0.35 +1.9 925,082 + yihO MCAODC_04560 0.35 -1.3 925,093 - yihO MCAODC_04560 0.36 +0.1 925,093 - yihO MCAODC_04560 0.36 +1.9 925,104 + yihO MCAODC_04560 0.37 -0.4 925,104 + yihO MCAODC_04560 0.37 +1.1 925,188 + yihO MCAODC_04560 0.43 +0.4 925,188 + yihO MCAODC_04560 0.43 -0.7 925,201 + yihO MCAODC_04560 0.44 -0.2 925,223 - yihO MCAODC_04560 0.45 -0.6 925,248 + yihO MCAODC_04560 0.47 +0.1 925,248 + yihO MCAODC_04560 0.47 +0.3 925,249 - yihO MCAODC_04560 0.47 -0.8 925,258 - yihO MCAODC_04560 0.48 +0.1 925,370 - yihO MCAODC_04560 0.56 +1.3 925,392 + yihO MCAODC_04560 0.57 -0.8 925,463 + yihO MCAODC_04560 0.62 +1.7 925,464 - yihO MCAODC_04560 0.63 +0.9 925,499 + yihO MCAODC_04560 0.65 -0.3 925,540 + yihO MCAODC_04560 0.68 -0.2 925,585 - yihO MCAODC_04560 0.71 -0.8 925,611 - yihO MCAODC_04560 0.73 +0.7 925,611 - yihO MCAODC_04560 0.73 +0.8 925,646 + yihO MCAODC_04560 0.75 -0.5 925,647 - yihO MCAODC_04560 0.76 +1.3 925,651 + yihO MCAODC_04560 0.76 -1.0 925,702 + yihO MCAODC_04560 0.79 +0.5 925,704 + yihO MCAODC_04560 0.80 -0.2 925,705 - yihO MCAODC_04560 0.80 +0.2 925,705 - yihO MCAODC_04560 0.80 -2.0 925,809 - yihO MCAODC_04560 0.87 -0.8 925,917 + -1.7 925,986 - -1.9 926,143 + ompL MCAODC_04565 0.20 +0.3 926,144 - ompL MCAODC_04565 0.20 +1.3 926,145 + ompL MCAODC_04565 0.20 +0.6 926,177 + ompL MCAODC_04565 0.25 -0.4 926,178 - ompL MCAODC_04565 0.25 -2.5 926,190 + ompL MCAODC_04565 0.26 -0.5 926,214 + ompL MCAODC_04565 0.30 +1.3 926,215 - ompL MCAODC_04565 0.30 -0.1 926,226 + ompL MCAODC_04565 0.31 -0.4 926,340 + ompL MCAODC_04565 0.46 -2.3 926,385 + ompL MCAODC_04565 0.52 +0.6 926,398 - ompL MCAODC_04565 0.54 +0.5 926,442 + ompL MCAODC_04565 0.60 -0.9 926,447 - ompL MCAODC_04565 0.60 +2.5 926,492 - ompL MCAODC_04565 0.66 -1.6 926,542 - ompL MCAODC_04565 0.73 +2.6 926,564 - ompL MCAODC_04565 0.76 -0.1 926,619 + ompL MCAODC_04565 0.83 +0.0 926,620 - ompL MCAODC_04565 0.83 +0.2 926,640 + ompL MCAODC_04565 0.86 +0.3 926,659 + ompL MCAODC_04565 0.88 -1.5 926,659 + ompL MCAODC_04565 0.88 -0.8 926,659 + ompL MCAODC_04565 0.88 +0.9 926,661 + ompL MCAODC_04565 0.88 +0.7 926,662 - ompL MCAODC_04565 0.89 -0.0 926,679 - +0.9 926,679 - +0.5 926,737 + +0.5 926,738 - -0.9 926,824 - -0.8 926,824 - +1.6 926,836 + -0.4 926,840 + +0.4 926,840 + -0.3 926,868 + -0.3 926,868 + +0.9 926,868 + -1.6 926,868 + -0.4 926,869 - +1.1 926,869 - +2.5 926,877 + +1.6 926,880 + -0.4 926,881 - -1.3 926,896 + +0.3 926,954 + -0.9 926,988 - yihN MCAODC_04570 0.12 -0.2 926,988 - yihN MCAODC_04570 0.12 -0.9
Or see this region's nucleotide sequence