Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rhaS and rhaB are separated by 287 nucleotides rhaB and rhaA overlap by 4 nucleotides
MCAODC_04390: rhaS - HTH-type transcriptional activator RhaS, at 887,620 to 888,456
rhaS
MCAODC_04395: rhaB - rhamnulokinase, at 888,744 to 890,213
rhaB
MCAODC_04400: rhaA - L-rhamnose isomerase, at 890,210 to 891,469
rhaA
Position (kb) 888
889
890
891 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 887.761 kb on + strand, within rhaS at 887.761 kb on + strand, within rhaS at 887.832 kb on + strand, within rhaS at 887.833 kb on - strand, within rhaS at 887.833 kb on - strand, within rhaS at 887.833 kb on - strand, within rhaS at 887.845 kb on + strand, within rhaS at 887.845 kb on + strand, within rhaS at 887.845 kb on + strand, within rhaS at 887.846 kb on - strand, within rhaS at 887.850 kb on + strand, within rhaS at 887.850 kb on + strand, within rhaS at 887.850 kb on + strand, within rhaS at 887.850 kb on + strand, within rhaS at 887.851 kb on - strand, within rhaS at 887.982 kb on + strand, within rhaS at 887.998 kb on + strand, within rhaS at 887.999 kb on - strand, within rhaS at 888.006 kb on + strand, within rhaS at 888.006 kb on + strand, within rhaS at 888.006 kb on + strand, within rhaS at 888.007 kb on - strand, within rhaS at 888.097 kb on + strand, within rhaS at 888.097 kb on + strand, within rhaS at 888.210 kb on + strand, within rhaS at 888.210 kb on + strand, within rhaS at 888.231 kb on + strand, within rhaS at 888.231 kb on + strand, within rhaS at 888.232 kb on - strand, within rhaS at 888.239 kb on + strand, within rhaS at 888.240 kb on - strand, within rhaS at 888.240 kb on - strand, within rhaS at 888.240 kb on - strand, within rhaS at 888.240 kb on - strand, within rhaS at 888.240 kb on - strand, within rhaS at 888.291 kb on + strand, within rhaS at 888.292 kb on - strand, within rhaS at 888.292 kb on - strand, within rhaS at 888.292 kb on - strand, within rhaS at 888.293 kb on + strand, within rhaS at 888.293 kb on + strand, within rhaS at 888.293 kb on + strand, within rhaS at 888.293 kb on + strand, within rhaS at 888.307 kb on - strand, within rhaS at 888.318 kb on + strand, within rhaS at 888.400 kb on + strand at 888.441 kb on + strand at 888.441 kb on + strand at 888.441 kb on + strand at 888.441 kb on + strand at 888.442 kb on - strand at 888.442 kb on - strand at 888.442 kb on - strand at 888.442 kb on - strand at 888.445 kb on + strand at 888.445 kb on + strand at 888.445 kb on + strand at 888.446 kb on - strand at 888.446 kb on - strand at 888.446 kb on - strand at 888.512 kb on + strand at 888.512 kb on + strand at 888.563 kb on + strand at 888.708 kb on + strand at 888.719 kb on + strand at 888.719 kb on + strand at 888.743 kb on + strand at 888.744 kb on - strand at 888.744 kb on - strand at 888.744 kb on - strand at 888.934 kb on + strand, within rhaB at 888.935 kb on - strand, within rhaB at 889.048 kb on - strand, within rhaB at 889.109 kb on + strand, within rhaB at 889.109 kb on + strand, within rhaB at 889.110 kb on - strand, within rhaB at 889.110 kb on - strand, within rhaB at 889.113 kb on + strand, within rhaB at 889.113 kb on + strand, within rhaB at 889.114 kb on - strand, within rhaB at 889.121 kb on + strand, within rhaB at 889.149 kb on - strand, within rhaB at 889.155 kb on + strand, within rhaB at 889.193 kb on + strand, within rhaB at 889.193 kb on + strand, within rhaB at 889.269 kb on + strand, within rhaB at 889.271 kb on + strand, within rhaB at 889.271 kb on + strand, within rhaB at 889.271 kb on + strand, within rhaB at 889.272 kb on - strand, within rhaB at 889.272 kb on - strand, within rhaB at 889.272 kb on - strand, within rhaB at 889.272 kb on - strand, within rhaB at 889.272 kb on - strand, within rhaB at 889.272 kb on - strand, within rhaB at 889.272 kb on - strand, within rhaB at 889.272 kb on - strand, within rhaB at 889.393 kb on + strand, within rhaB at 889.393 kb on + strand, within rhaB at 889.393 kb on + strand, within rhaB at 889.393 kb on + strand, within rhaB at 889.393 kb on + strand, within rhaB at 889.394 kb on - strand, within rhaB at 889.394 kb on - strand, within rhaB at 889.394 kb on - strand, within rhaB at 889.394 kb on - strand, within rhaB at 889.503 kb on + strand, within rhaB at 889.503 kb on + strand, within rhaB at 889.503 kb on + strand, within rhaB at 889.503 kb on + strand, within rhaB at 889.503 kb on + strand, within rhaB at 889.504 kb on - strand, within rhaB at 889.504 kb on - strand, within rhaB at 889.504 kb on - strand, within rhaB at 889.557 kb on - strand, within rhaB at 889.557 kb on - strand, within rhaB at 889.632 kb on - strand, within rhaB at 889.642 kb on + strand, within rhaB at 889.642 kb on + strand, within rhaB at 889.642 kb on + strand, within rhaB at 889.642 kb on + strand, within rhaB at 889.697 kb on + strand, within rhaB at 889.697 kb on + strand, within rhaB at 889.697 kb on + strand, within rhaB at 889.697 kb on + strand, within rhaB at 889.697 kb on + strand, within rhaB at 889.698 kb on - strand, within rhaB at 889.737 kb on - strand, within rhaB at 889.760 kb on + strand, within rhaB at 889.878 kb on + strand, within rhaB at 889.879 kb on - strand, within rhaB at 889.879 kb on - strand, within rhaB at 889.937 kb on + strand, within rhaB at 889.937 kb on + strand, within rhaB at 889.978 kb on + strand, within rhaB at 889.978 kb on + strand, within rhaB at 889.978 kb on + strand, within rhaB at 889.979 kb on - strand, within rhaB at 889.979 kb on - strand, within rhaB at 889.979 kb on - strand, within rhaB at 890.057 kb on - strand, within rhaB at 890.132 kb on + strand at 890.133 kb on - strand at 890.133 kb on - strand at 890.138 kb on + strand at 890.163 kb on + strand at 890.163 kb on + strand at 890.163 kb on + strand at 890.163 kb on + strand at 890.163 kb on + strand at 890.163 kb on + strand at 890.164 kb on - strand at 890.164 kb on - strand at 890.164 kb on - strand at 890.164 kb on - strand at 890.184 kb on - strand at 890.266 kb on - strand at 890.392 kb on + strand, within rhaA at 890.434 kb on - strand, within rhaA at 890.434 kb on - strand, within rhaA at 890.434 kb on - strand, within rhaA at 890.456 kb on - strand, within rhaA at 890.490 kb on + strand, within rhaA at 890.491 kb on - strand, within rhaA at 890.491 kb on - strand, within rhaA at 890.501 kb on + strand, within rhaA at 890.501 kb on + strand, within rhaA at 890.502 kb on - strand, within rhaA at 890.645 kb on - strand, within rhaA at 890.786 kb on - strand, within rhaA at 890.872 kb on + strand, within rhaA at 890.918 kb on + strand, within rhaA at 890.918 kb on + strand, within rhaA at 890.918 kb on + strand, within rhaA at 890.919 kb on - strand, within rhaA at 890.942 kb on + strand, within rhaA at 890.942 kb on + strand, within rhaA at 890.943 kb on - strand, within rhaA at 890.951 kb on + strand, within rhaA at 891.044 kb on + strand, within rhaA at 891.044 kb on + strand, within rhaA at 891.044 kb on + strand, within rhaA at 891.044 kb on + strand, within rhaA at 891.044 kb on + strand, within rhaA at 891.045 kb on - strand, within rhaA at 891.045 kb on - strand, within rhaA at 891.102 kb on + strand, within rhaA at 891.102 kb on + strand, within rhaA at 891.102 kb on + strand, within rhaA at 891.102 kb on + strand, within rhaA at 891.103 kb on - strand, within rhaA at 891.103 kb on - strand, within rhaA at 891.202 kb on + strand, within rhaA at 891.202 kb on + strand, within rhaA at 891.202 kb on + strand, within rhaA at 891.203 kb on - strand, within rhaA at 891.211 kb on + strand, within rhaA at 891.211 kb on + strand, within rhaA at 891.212 kb on - strand, within rhaA at 891.212 kb on - strand, within rhaA at 891.212 kb on - strand, within rhaA
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 887,761 + rhaS MCAODC_04390 0.17 +0.3 887,761 + rhaS MCAODC_04390 0.17 +0.5 887,832 + rhaS MCAODC_04390 0.25 -1.7 887,833 - rhaS MCAODC_04390 0.25 -1.3 887,833 - rhaS MCAODC_04390 0.25 -0.7 887,833 - rhaS MCAODC_04390 0.25 +0.3 887,845 + rhaS MCAODC_04390 0.27 -0.3 887,845 + rhaS MCAODC_04390 0.27 -0.5 887,845 + rhaS MCAODC_04390 0.27 +1.9 887,846 - rhaS MCAODC_04390 0.27 +0.3 887,850 + rhaS MCAODC_04390 0.27 +1.3 887,850 + rhaS MCAODC_04390 0.27 +0.2 887,850 + rhaS MCAODC_04390 0.27 -1.1 887,850 + rhaS MCAODC_04390 0.27 +1.5 887,851 - rhaS MCAODC_04390 0.28 -0.4 887,982 + rhaS MCAODC_04390 0.43 -0.0 887,998 + rhaS MCAODC_04390 0.45 +1.2 887,999 - rhaS MCAODC_04390 0.45 -0.4 888,006 + rhaS MCAODC_04390 0.46 -0.4 888,006 + rhaS MCAODC_04390 0.46 -0.3 888,006 + rhaS MCAODC_04390 0.46 -0.3 888,007 - rhaS MCAODC_04390 0.46 +1.5 888,097 + rhaS MCAODC_04390 0.57 -0.5 888,097 + rhaS MCAODC_04390 0.57 -0.2 888,210 + rhaS MCAODC_04390 0.70 +0.4 888,210 + rhaS MCAODC_04390 0.70 -0.3 888,231 + rhaS MCAODC_04390 0.73 -0.7 888,231 + rhaS MCAODC_04390 0.73 -0.1 888,232 - rhaS MCAODC_04390 0.73 -0.5 888,239 + rhaS MCAODC_04390 0.74 +1.3 888,240 - rhaS MCAODC_04390 0.74 -0.7 888,240 - rhaS MCAODC_04390 0.74 +0.7 888,240 - rhaS MCAODC_04390 0.74 -2.4 888,240 - rhaS MCAODC_04390 0.74 +0.6 888,240 - rhaS MCAODC_04390 0.74 -0.5 888,291 + rhaS MCAODC_04390 0.80 +0.4 888,292 - rhaS MCAODC_04390 0.80 +0.2 888,292 - rhaS MCAODC_04390 0.80 -0.1 888,292 - rhaS MCAODC_04390 0.80 -0.8 888,293 + rhaS MCAODC_04390 0.80 -2.2 888,293 + rhaS MCAODC_04390 0.80 +1.9 888,293 + rhaS MCAODC_04390 0.80 +1.9 888,293 + rhaS MCAODC_04390 0.80 -0.3 888,307 - rhaS MCAODC_04390 0.82 +0.6 888,318 + rhaS MCAODC_04390 0.83 +0.6 888,400 + +0.3 888,441 + +0.3 888,441 + -0.8 888,441 + +0.2 888,441 + -0.6 888,442 - -1.1 888,442 - +0.4 888,442 - -0.2 888,442 - -0.1 888,445 + -0.4 888,445 + +0.8 888,445 + -2.0 888,446 - -0.4 888,446 - -0.1 888,446 - +0.5 888,512 + -0.9 888,512 + -0.5 888,563 + -1.4 888,708 + -0.4 888,719 + -1.4 888,719 + -0.3 888,743 + +0.4 888,744 - +0.5 888,744 - +1.9 888,744 - -0.8 888,934 + rhaB MCAODC_04395 0.13 -0.6 888,935 - rhaB MCAODC_04395 0.13 -1.3 889,048 - rhaB MCAODC_04395 0.21 +0.7 889,109 + rhaB MCAODC_04395 0.25 -0.4 889,109 + rhaB MCAODC_04395 0.25 -0.1 889,110 - rhaB MCAODC_04395 0.25 +0.2 889,110 - rhaB MCAODC_04395 0.25 +2.5 889,113 + rhaB MCAODC_04395 0.25 -0.5 889,113 + rhaB MCAODC_04395 0.25 -0.6 889,114 - rhaB MCAODC_04395 0.25 +0.1 889,121 + rhaB MCAODC_04395 0.26 -0.7 889,149 - rhaB MCAODC_04395 0.28 +1.1 889,155 + rhaB MCAODC_04395 0.28 +0.1 889,193 + rhaB MCAODC_04395 0.31 +0.3 889,193 + rhaB MCAODC_04395 0.31 -0.1 889,269 + rhaB MCAODC_04395 0.36 +0.7 889,271 + rhaB MCAODC_04395 0.36 -0.9 889,271 + rhaB MCAODC_04395 0.36 -0.3 889,271 + rhaB MCAODC_04395 0.36 -1.0 889,272 - rhaB MCAODC_04395 0.36 +0.3 889,272 - rhaB MCAODC_04395 0.36 -1.7 889,272 - rhaB MCAODC_04395 0.36 -0.5 889,272 - rhaB MCAODC_04395 0.36 +0.3 889,272 - rhaB MCAODC_04395 0.36 -0.4 889,272 - rhaB MCAODC_04395 0.36 +0.2 889,272 - rhaB MCAODC_04395 0.36 -0.7 889,272 - rhaB MCAODC_04395 0.36 -1.0 889,393 + rhaB MCAODC_04395 0.44 +1.9 889,393 + rhaB MCAODC_04395 0.44 +0.3 889,393 + rhaB MCAODC_04395 0.44 +0.7 889,393 + rhaB MCAODC_04395 0.44 -2.7 889,393 + rhaB MCAODC_04395 0.44 -0.3 889,394 - rhaB MCAODC_04395 0.44 -0.1 889,394 - rhaB MCAODC_04395 0.44 -2.4 889,394 - rhaB MCAODC_04395 0.44 -0.9 889,394 - rhaB MCAODC_04395 0.44 -0.1 889,503 + rhaB MCAODC_04395 0.52 -0.4 889,503 + rhaB MCAODC_04395 0.52 -0.1 889,503 + rhaB MCAODC_04395 0.52 -0.7 889,503 + rhaB MCAODC_04395 0.52 +1.1 889,503 + rhaB MCAODC_04395 0.52 -0.4 889,504 - rhaB MCAODC_04395 0.52 -0.3 889,504 - rhaB MCAODC_04395 0.52 -1.5 889,504 - rhaB MCAODC_04395 0.52 -1.0 889,557 - rhaB MCAODC_04395 0.55 +0.1 889,557 - rhaB MCAODC_04395 0.55 +0.0 889,632 - rhaB MCAODC_04395 0.60 -1.7 889,642 + rhaB MCAODC_04395 0.61 -0.9 889,642 + rhaB MCAODC_04395 0.61 +0.3 889,642 + rhaB MCAODC_04395 0.61 +1.2 889,642 + rhaB MCAODC_04395 0.61 -0.1 889,697 + rhaB MCAODC_04395 0.65 -1.7 889,697 + rhaB MCAODC_04395 0.65 -0.2 889,697 + rhaB MCAODC_04395 0.65 -0.0 889,697 + rhaB MCAODC_04395 0.65 -1.4 889,697 + rhaB MCAODC_04395 0.65 +0.1 889,698 - rhaB MCAODC_04395 0.65 -0.5 889,737 - rhaB MCAODC_04395 0.68 -1.5 889,760 + rhaB MCAODC_04395 0.69 -0.3 889,878 + rhaB MCAODC_04395 0.77 -0.9 889,879 - rhaB MCAODC_04395 0.77 -0.7 889,879 - rhaB MCAODC_04395 0.77 -1.2 889,937 + rhaB MCAODC_04395 0.81 -0.4 889,937 + rhaB MCAODC_04395 0.81 +0.5 889,978 + rhaB MCAODC_04395 0.84 +0.1 889,978 + rhaB MCAODC_04395 0.84 -0.2 889,978 + rhaB MCAODC_04395 0.84 +0.3 889,979 - rhaB MCAODC_04395 0.84 -0.1 889,979 - rhaB MCAODC_04395 0.84 -0.8 889,979 - rhaB MCAODC_04395 0.84 -0.7 890,057 - rhaB MCAODC_04395 0.89 +0.7 890,132 + +1.0 890,133 - -0.2 890,133 - -0.9 890,138 + +1.0 890,163 + -0.3 890,163 + -0.4 890,163 + +0.6 890,163 + +0.7 890,163 + -0.0 890,163 + -0.7 890,164 - -0.7 890,164 - -0.2 890,164 - -0.7 890,164 - -0.6 890,184 - -0.5 890,266 - -0.3 890,392 + rhaA MCAODC_04400 0.14 -0.9 890,434 - rhaA MCAODC_04400 0.18 -0.4 890,434 - rhaA MCAODC_04400 0.18 -0.1 890,434 - rhaA MCAODC_04400 0.18 -0.7 890,456 - rhaA MCAODC_04400 0.20 -1.7 890,490 + rhaA MCAODC_04400 0.22 +0.1 890,491 - rhaA MCAODC_04400 0.22 -0.3 890,491 - rhaA MCAODC_04400 0.22 -0.1 890,501 + rhaA MCAODC_04400 0.23 +0.3 890,501 + rhaA MCAODC_04400 0.23 -0.2 890,502 - rhaA MCAODC_04400 0.23 -0.9 890,645 - rhaA MCAODC_04400 0.35 +1.9 890,786 - rhaA MCAODC_04400 0.46 -0.6 890,872 + rhaA MCAODC_04400 0.53 +0.3 890,918 + rhaA MCAODC_04400 0.56 +0.7 890,918 + rhaA MCAODC_04400 0.56 -1.6 890,918 + rhaA MCAODC_04400 0.56 -1.0 890,919 - rhaA MCAODC_04400 0.56 -0.5 890,942 + rhaA MCAODC_04400 0.58 -0.5 890,942 + rhaA MCAODC_04400 0.58 -2.4 890,943 - rhaA MCAODC_04400 0.58 -1.4 890,951 + rhaA MCAODC_04400 0.59 -0.5 891,044 + rhaA MCAODC_04400 0.66 -0.7 891,044 + rhaA MCAODC_04400 0.66 -0.6 891,044 + rhaA MCAODC_04400 0.66 -1.0 891,044 + rhaA MCAODC_04400 0.66 -0.5 891,044 + rhaA MCAODC_04400 0.66 -1.6 891,045 - rhaA MCAODC_04400 0.66 +0.2 891,045 - rhaA MCAODC_04400 0.66 +1.5 891,102 + rhaA MCAODC_04400 0.71 +2.9 891,102 + rhaA MCAODC_04400 0.71 +0.4 891,102 + rhaA MCAODC_04400 0.71 +1.9 891,102 + rhaA MCAODC_04400 0.71 +0.5 891,103 - rhaA MCAODC_04400 0.71 +0.2 891,103 - rhaA MCAODC_04400 0.71 -0.8 891,202 + rhaA MCAODC_04400 0.79 +1.3 891,202 + rhaA MCAODC_04400 0.79 +1.9 891,202 + rhaA MCAODC_04400 0.79 -1.1 891,203 - rhaA MCAODC_04400 0.79 -0.9 891,211 + rhaA MCAODC_04400 0.79 -0.3 891,211 + rhaA MCAODC_04400 0.79 -2.9 891,212 - rhaA MCAODC_04400 0.80 +1.9 891,212 - rhaA MCAODC_04400 0.80 -0.3 891,212 - rhaA MCAODC_04400 0.80 -0.1
Or see this region's nucleotide sequence