Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt zraP and yjaH are separated by 1 nucleotides yjaH and hupA are separated by 72 nucleotides hupA and yjaG are separated by 186 nucleotides yjaG and nfi are separated by 42 nucleotides
MCAODC_03835: zraP - zinc resistance sensor/chaperone ZraP, at 775,639 to 776,064
zraP
MCAODC_03840: yjaH - Uncharacterized protein YjaH, at 776,066 to 776,701
yjaH
MCAODC_03845: hupA - DNA-binding protein HU-alpha, at 776,774 to 777,046
hupA
MCAODC_03850: yjaG - Uncharacterized protein YjaG, at 777,233 to 777,823
yjaG
MCAODC_03855: nfi - deoxyribonuclease V, at 777,866 to 778,537
nfi
Position (kb) 776
777
778 Strain fitness (log2 ratio) -2
-1
0
1
2 at 775.804 kb on + strand, within zraP at 775.804 kb on + strand, within zraP at 775.805 kb on - strand, within zraP at 775.855 kb on + strand, within zraP at 775.855 kb on + strand, within zraP at 775.855 kb on + strand, within zraP at 775.855 kb on + strand, within zraP at 775.855 kb on + strand, within zraP at 775.856 kb on - strand, within zraP at 775.856 kb on - strand, within zraP at 775.856 kb on - strand, within zraP at 775.856 kb on - strand, within zraP at 775.856 kb on - strand, within zraP at 775.856 kb on - strand, within zraP at 775.887 kb on + strand, within zraP at 775.941 kb on - strand, within zraP at 775.949 kb on + strand, within zraP at 776.043 kb on + strand at 776.118 kb on - strand at 776.123 kb on + strand at 776.123 kb on + strand at 776.123 kb on + strand at 776.124 kb on - strand at 776.124 kb on - strand at 776.219 kb on + strand, within yjaH at 776.219 kb on + strand, within yjaH at 776.219 kb on + strand, within yjaH at 776.230 kb on + strand, within yjaH at 776.231 kb on - strand, within yjaH at 776.312 kb on + strand, within yjaH at 776.324 kb on - strand, within yjaH at 776.355 kb on + strand, within yjaH at 776.355 kb on + strand, within yjaH at 776.356 kb on - strand, within yjaH at 776.358 kb on - strand, within yjaH at 776.413 kb on + strand, within yjaH at 776.413 kb on + strand, within yjaH at 776.414 kb on - strand, within yjaH at 776.414 kb on - strand, within yjaH at 776.414 kb on - strand, within yjaH at 776.414 kb on - strand, within yjaH at 776.453 kb on - strand, within yjaH at 776.482 kb on + strand, within yjaH at 776.483 kb on - strand, within yjaH at 776.517 kb on + strand, within yjaH at 776.517 kb on + strand, within yjaH at 776.606 kb on + strand, within yjaH at 776.668 kb on + strand at 776.750 kb on - strand at 776.750 kb on - strand at 776.775 kb on + strand at 776.776 kb on - strand at 776.776 kb on - strand at 776.779 kb on + strand at 776.779 kb on + strand at 776.780 kb on - strand at 776.780 kb on - strand at 776.780 kb on - strand at 776.780 kb on - strand at 776.824 kb on + strand, within hupA at 776.824 kb on + strand, within hupA at 776.825 kb on - strand, within hupA at 776.922 kb on - strand, within hupA at 776.984 kb on - strand, within hupA at 777.021 kb on - strand at 777.021 kb on - strand at 777.046 kb on + strand at 777.046 kb on + strand at 777.047 kb on - strand at 777.051 kb on + strand at 777.057 kb on + strand at 777.057 kb on + strand at 777.058 kb on - strand at 777.058 kb on - strand at 777.058 kb on - strand at 777.069 kb on - strand at 777.078 kb on + strand at 777.078 kb on + strand at 777.078 kb on + strand at 777.079 kb on - strand at 777.108 kb on + strand at 777.108 kb on + strand at 777.108 kb on + strand at 777.109 kb on - strand at 777.123 kb on + strand at 777.162 kb on + strand at 777.163 kb on - strand at 777.214 kb on + strand at 777.214 kb on + strand at 777.214 kb on + strand at 777.215 kb on - strand at 777.234 kb on + strand at 777.235 kb on - strand at 777.249 kb on - strand at 777.256 kb on + strand at 777.299 kb on + strand, within yjaG at 777.332 kb on + strand, within yjaG at 777.375 kb on - strand, within yjaG at 777.463 kb on + strand, within yjaG at 777.463 kb on + strand, within yjaG at 777.463 kb on + strand, within yjaG at 777.464 kb on - strand, within yjaG at 777.464 kb on - strand, within yjaG at 777.464 kb on - strand, within yjaG at 777.464 kb on - strand, within yjaG at 777.464 kb on - strand, within yjaG at 777.525 kb on - strand, within yjaG at 777.561 kb on + strand, within yjaG at 777.726 kb on + strand, within yjaG at 777.727 kb on - strand, within yjaG at 777.735 kb on + strand, within yjaG at 777.750 kb on - strand, within yjaG at 777.750 kb on - strand, within yjaG at 777.819 kb on - strand at 777.884 kb on - strand at 777.885 kb on + strand at 777.885 kb on + strand at 777.886 kb on - strand at 777.971 kb on + strand, within nfi at 777.971 kb on + strand, within nfi at 778.012 kb on + strand, within nfi at 778.018 kb on + strand, within nfi at 778.018 kb on + strand, within nfi at 778.018 kb on + strand, within nfi at 778.019 kb on - strand, within nfi at 778.022 kb on + strand, within nfi at 778.023 kb on - strand, within nfi
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 775,804 + zraP MCAODC_03835 0.39 -0.5 775,804 + zraP MCAODC_03835 0.39 -0.9 775,805 - zraP MCAODC_03835 0.39 -0.6 775,855 + zraP MCAODC_03835 0.51 +1.5 775,855 + zraP MCAODC_03835 0.51 -0.3 775,855 + zraP MCAODC_03835 0.51 -0.0 775,855 + zraP MCAODC_03835 0.51 -0.1 775,855 + zraP MCAODC_03835 0.51 -1.3 775,856 - zraP MCAODC_03835 0.51 +0.9 775,856 - zraP MCAODC_03835 0.51 +0.3 775,856 - zraP MCAODC_03835 0.51 +1.9 775,856 - zraP MCAODC_03835 0.51 -0.3 775,856 - zraP MCAODC_03835 0.51 -2.2 775,856 - zraP MCAODC_03835 0.51 +0.3 775,887 + zraP MCAODC_03835 0.58 +0.0 775,941 - zraP MCAODC_03835 0.71 -1.3 775,949 + zraP MCAODC_03835 0.73 -1.1 776,043 + +1.5 776,118 - -0.4 776,123 + -1.7 776,123 + -1.7 776,123 + -0.7 776,124 - -0.4 776,124 - -0.5 776,219 + yjaH MCAODC_03840 0.24 +0.1 776,219 + yjaH MCAODC_03840 0.24 -0.8 776,219 + yjaH MCAODC_03840 0.24 +0.3 776,230 + yjaH MCAODC_03840 0.26 -0.4 776,231 - yjaH MCAODC_03840 0.26 +0.9 776,312 + yjaH MCAODC_03840 0.39 -0.4 776,324 - yjaH MCAODC_03840 0.41 -0.4 776,355 + yjaH MCAODC_03840 0.45 -0.1 776,355 + yjaH MCAODC_03840 0.45 -0.3 776,356 - yjaH MCAODC_03840 0.46 +0.7 776,358 - yjaH MCAODC_03840 0.46 +0.6 776,413 + yjaH MCAODC_03840 0.55 -0.9 776,413 + yjaH MCAODC_03840 0.55 -0.7 776,414 - yjaH MCAODC_03840 0.55 -0.9 776,414 - yjaH MCAODC_03840 0.55 +0.3 776,414 - yjaH MCAODC_03840 0.55 +0.9 776,414 - yjaH MCAODC_03840 0.55 -1.3 776,453 - yjaH MCAODC_03840 0.61 +0.6 776,482 + yjaH MCAODC_03840 0.65 +0.2 776,483 - yjaH MCAODC_03840 0.66 -0.9 776,517 + yjaH MCAODC_03840 0.71 +0.9 776,517 + yjaH MCAODC_03840 0.71 +0.3 776,606 + yjaH MCAODC_03840 0.85 +0.6 776,668 + -0.0 776,750 - -1.4 776,750 - -0.2 776,775 + -0.4 776,776 - +0.9 776,776 - +0.3 776,779 + -0.7 776,779 + -0.9 776,780 - +0.2 776,780 - -0.5 776,780 - +1.4 776,780 - -0.6 776,824 + hupA MCAODC_03845 0.18 +0.7 776,824 + hupA MCAODC_03845 0.18 -0.4 776,825 - hupA MCAODC_03845 0.19 -1.8 776,922 - hupA MCAODC_03845 0.54 -2.3 776,984 - hupA MCAODC_03845 0.77 +0.9 777,021 - -1.4 777,021 - +0.7 777,046 + -1.0 777,046 + -0.1 777,047 - -0.9 777,051 + -1.7 777,057 + +0.1 777,057 + -0.4 777,058 - -0.1 777,058 - -1.4 777,058 - +0.1 777,069 - +1.6 777,078 + -0.5 777,078 + -0.6 777,078 + -0.4 777,079 - -1.0 777,108 + -0.1 777,108 + -1.1 777,108 + +0.3 777,109 - -0.4 777,123 + -1.3 777,162 + -0.4 777,163 - +0.2 777,214 + -0.7 777,214 + -1.2 777,214 + -0.1 777,215 - -1.4 777,234 + -0.1 777,235 - +0.3 777,249 - -2.0 777,256 + -1.3 777,299 + yjaG MCAODC_03850 0.11 -2.3 777,332 + yjaG MCAODC_03850 0.17 -0.1 777,375 - yjaG MCAODC_03850 0.24 -1.1 777,463 + yjaG MCAODC_03850 0.39 -1.8 777,463 + yjaG MCAODC_03850 0.39 +0.3 777,463 + yjaG MCAODC_03850 0.39 -0.4 777,464 - yjaG MCAODC_03850 0.39 +0.1 777,464 - yjaG MCAODC_03850 0.39 -1.0 777,464 - yjaG MCAODC_03850 0.39 +0.4 777,464 - yjaG MCAODC_03850 0.39 -0.8 777,464 - yjaG MCAODC_03850 0.39 +0.3 777,525 - yjaG MCAODC_03850 0.49 +0.1 777,561 + yjaG MCAODC_03850 0.55 +1.5 777,726 + yjaG MCAODC_03850 0.83 +0.6 777,727 - yjaG MCAODC_03850 0.84 -0.6 777,735 + yjaG MCAODC_03850 0.85 +0.2 777,750 - yjaG MCAODC_03850 0.87 -0.1 777,750 - yjaG MCAODC_03850 0.87 -0.3 777,819 - -0.5 777,884 - -0.8 777,885 + -0.5 777,885 + -1.4 777,886 - +1.9 777,971 + nfi MCAODC_03855 0.16 -1.2 777,971 + nfi MCAODC_03855 0.16 -1.0 778,012 + nfi MCAODC_03855 0.22 +1.1 778,018 + nfi MCAODC_03855 0.23 +0.1 778,018 + nfi MCAODC_03855 0.23 +0.3 778,018 + nfi MCAODC_03855 0.23 +0.9 778,019 - nfi MCAODC_03855 0.23 -1.5 778,022 + nfi MCAODC_03855 0.23 -0.5 778,023 - nfi MCAODC_03855 0.23 -0.7
Or see this region's nucleotide sequence