Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt nrfC and nrfB overlap by 4 nucleotides nrfB and nrfA are separated by 44 nucleotides nrfA and ytcB are separated by 96 nucleotides ytcB and acs are separated by 239 nucleotides
MCAODC_03320: nrfC - cytochrome c nitrite reductase Fe-S protein, at 670,437 to 671,108
nrfC
MCAODC_03325: nrfB - cytochrome c nitrite reductase pentaheme subunit, at 671,105 to 671,671
nrfB
MCAODC_03330: nrfA - ammonia-forming nitrite reductase cytochrome c552 subunit, at 671,716 to 673,152
nrfA
MCAODC_03335: ytcB - Protein YtcB, at 673,249 to 673,305
ytcB
MCAODC_03340: acs - acetate--CoA ligase, at 673,545 to 675,503
acs
Position (kb) 671
672
673
674 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4 at 670.721 kb on - strand, within nrfC at 670.721 kb on - strand, within nrfC at 670.896 kb on - strand, within nrfC at 670.952 kb on + strand, within nrfC at 671.119 kb on + strand at 671.192 kb on - strand, within nrfB at 671.210 kb on + strand, within nrfB at 671.210 kb on + strand, within nrfB at 671.210 kb on + strand, within nrfB at 671.211 kb on - strand, within nrfB at 671.211 kb on - strand, within nrfB at 671.211 kb on - strand, within nrfB at 671.224 kb on + strand, within nrfB at 671.224 kb on + strand, within nrfB at 671.225 kb on - strand, within nrfB at 671.225 kb on - strand, within nrfB at 671.273 kb on + strand, within nrfB at 671.332 kb on + strand, within nrfB at 671.332 kb on + strand, within nrfB at 671.332 kb on + strand, within nrfB at 671.332 kb on + strand, within nrfB at 671.332 kb on + strand, within nrfB at 671.332 kb on + strand, within nrfB at 671.332 kb on + strand, within nrfB at 671.333 kb on - strand, within nrfB at 671.333 kb on - strand, within nrfB at 671.333 kb on - strand, within nrfB at 671.333 kb on - strand, within nrfB at 671.333 kb on - strand, within nrfB at 671.333 kb on - strand, within nrfB at 671.361 kb on + strand, within nrfB at 671.361 kb on + strand, within nrfB at 671.362 kb on - strand, within nrfB at 671.362 kb on - strand, within nrfB at 671.362 kb on - strand, within nrfB at 671.471 kb on - strand, within nrfB at 671.494 kb on + strand, within nrfB at 671.494 kb on + strand, within nrfB at 671.494 kb on + strand, within nrfB at 671.494 kb on + strand, within nrfB at 671.495 kb on - strand, within nrfB at 671.495 kb on - strand, within nrfB at 671.495 kb on - strand, within nrfB at 671.495 kb on - strand, within nrfB at 671.495 kb on - strand, within nrfB at 671.512 kb on + strand, within nrfB at 671.513 kb on - strand, within nrfB at 671.513 kb on - strand, within nrfB at 671.543 kb on - strand, within nrfB at 671.554 kb on + strand, within nrfB at 671.593 kb on + strand, within nrfB at 671.600 kb on - strand, within nrfB at 671.648 kb on + strand at 671.649 kb on - strand at 671.652 kb on - strand at 671.660 kb on + strand at 671.660 kb on + strand at 671.660 kb on + strand at 671.661 kb on - strand at 671.661 kb on - strand at 671.661 kb on - strand at 671.663 kb on + strand at 671.664 kb on - strand at 671.671 kb on + strand at 671.671 kb on + strand at 671.672 kb on - strand at 671.740 kb on - strand at 671.979 kb on + strand, within nrfA at 671.979 kb on + strand, within nrfA at 671.979 kb on + strand, within nrfA at 671.980 kb on - strand, within nrfA at 671.980 kb on - strand, within nrfA at 672.156 kb on + strand, within nrfA at 672.228 kb on + strand, within nrfA at 672.240 kb on + strand, within nrfA at 672.249 kb on + strand, within nrfA at 672.249 kb on + strand, within nrfA at 672.260 kb on + strand, within nrfA at 672.260 kb on + strand, within nrfA at 672.294 kb on + strand, within nrfA at 672.295 kb on - strand, within nrfA at 672.295 kb on - strand, within nrfA at 672.354 kb on - strand, within nrfA at 672.354 kb on - strand, within nrfA at 672.400 kb on - strand, within nrfA at 672.428 kb on + strand, within nrfA at 672.431 kb on + strand, within nrfA at 672.431 kb on + strand, within nrfA at 672.432 kb on - strand, within nrfA at 672.441 kb on + strand, within nrfA at 672.503 kb on + strand, within nrfA at 672.504 kb on - strand, within nrfA at 672.506 kb on + strand, within nrfA at 672.506 kb on + strand, within nrfA at 672.602 kb on + strand, within nrfA at 672.602 kb on + strand, within nrfA at 672.661 kb on - strand, within nrfA at 672.679 kb on + strand, within nrfA at 672.679 kb on + strand, within nrfA at 672.680 kb on - strand, within nrfA at 672.680 kb on - strand, within nrfA at 672.680 kb on - strand, within nrfA at 672.717 kb on + strand, within nrfA at 672.729 kb on - strand, within nrfA at 672.729 kb on - strand, within nrfA at 672.729 kb on - strand, within nrfA at 672.777 kb on + strand, within nrfA at 672.778 kb on - strand, within nrfA at 672.891 kb on - strand, within nrfA at 672.891 kb on - strand, within nrfA at 672.891 kb on - strand, within nrfA at 672.995 kb on + strand, within nrfA at 672.995 kb on + strand, within nrfA at 672.995 kb on + strand, within nrfA at 672.995 kb on + strand, within nrfA at 672.995 kb on + strand, within nrfA at 672.996 kb on - strand, within nrfA at 672.996 kb on - strand, within nrfA at 673.045 kb on + strand at 673.111 kb on + strand at 673.215 kb on - strand at 673.224 kb on + strand at 673.224 kb on + strand at 673.224 kb on + strand at 673.224 kb on + strand at 673.224 kb on + strand at 673.225 kb on - strand at 673.225 kb on - strand at 673.225 kb on - strand at 673.225 kb on - strand at 673.225 kb on - strand at 673.225 kb on - strand at 673.225 kb on - strand at 673.321 kb on - strand at 673.326 kb on + strand at 673.361 kb on - strand at 673.415 kb on - strand at 673.601 kb on - strand at 673.626 kb on + strand at 673.638 kb on - strand at 673.638 kb on - strand at 673.640 kb on + strand at 673.652 kb on + strand at 673.745 kb on + strand, within acs at 673.745 kb on + strand, within acs at 673.745 kb on + strand, within acs at 673.746 kb on - strand, within acs at 673.746 kb on - strand, within acs at 673.746 kb on - strand, within acs at 673.820 kb on + strand, within acs at 673.865 kb on + strand, within acs at 673.866 kb on - strand, within acs at 673.866 kb on - strand, within acs at 673.866 kb on - strand, within acs at 673.872 kb on + strand, within acs at 673.872 kb on + strand, within acs at 673.873 kb on - strand, within acs at 673.873 kb on - strand, within acs at 673.874 kb on + strand, within acs at 673.875 kb on - strand, within acs at 673.910 kb on + strand, within acs at 673.956 kb on + strand, within acs at 673.956 kb on + strand, within acs at 673.956 kb on + strand, within acs at 673.956 kb on + strand, within acs at 673.959 kb on - strand, within acs at 674.127 kb on - strand, within acs at 674.127 kb on - strand, within acs at 674.130 kb on - strand, within acs
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 670,721 - nrfC MCAODC_03320 0.42 +0.5 670,721 - nrfC MCAODC_03320 0.42 -0.7 670,896 - nrfC MCAODC_03320 0.68 -0.4 670,952 + nrfC MCAODC_03320 0.77 -0.7 671,119 + -0.4 671,192 - nrfB MCAODC_03325 0.15 -1.3 671,210 + nrfB MCAODC_03325 0.19 -0.3 671,210 + nrfB MCAODC_03325 0.19 +0.0 671,210 + nrfB MCAODC_03325 0.19 +0.3 671,211 - nrfB MCAODC_03325 0.19 +2.4 671,211 - nrfB MCAODC_03325 0.19 -1.7 671,211 - nrfB MCAODC_03325 0.19 +0.7 671,224 + nrfB MCAODC_03325 0.21 -0.4 671,224 + nrfB MCAODC_03325 0.21 -0.3 671,225 - nrfB MCAODC_03325 0.21 -0.9 671,225 - nrfB MCAODC_03325 0.21 -2.5 671,273 + nrfB MCAODC_03325 0.30 +4.2 671,332 + nrfB MCAODC_03325 0.40 +0.9 671,332 + nrfB MCAODC_03325 0.40 +0.5 671,332 + nrfB MCAODC_03325 0.40 -1.8 671,332 + nrfB MCAODC_03325 0.40 -0.7 671,332 + nrfB MCAODC_03325 0.40 +1.4 671,332 + nrfB MCAODC_03325 0.40 -1.7 671,332 + nrfB MCAODC_03325 0.40 -0.1 671,333 - nrfB MCAODC_03325 0.40 -1.0 671,333 - nrfB MCAODC_03325 0.40 -1.1 671,333 - nrfB MCAODC_03325 0.40 +0.1 671,333 - nrfB MCAODC_03325 0.40 -1.9 671,333 - nrfB MCAODC_03325 0.40 +0.9 671,333 - nrfB MCAODC_03325 0.40 +0.3 671,361 + nrfB MCAODC_03325 0.45 -0.3 671,361 + nrfB MCAODC_03325 0.45 -0.4 671,362 - nrfB MCAODC_03325 0.45 +0.0 671,362 - nrfB MCAODC_03325 0.45 -0.0 671,362 - nrfB MCAODC_03325 0.45 +0.9 671,471 - nrfB MCAODC_03325 0.65 +0.9 671,494 + nrfB MCAODC_03325 0.69 +1.9 671,494 + nrfB MCAODC_03325 0.69 +1.2 671,494 + nrfB MCAODC_03325 0.69 -0.4 671,494 + nrfB MCAODC_03325 0.69 -0.6 671,495 - nrfB MCAODC_03325 0.69 +0.3 671,495 - nrfB MCAODC_03325 0.69 -0.1 671,495 - nrfB MCAODC_03325 0.69 -1.0 671,495 - nrfB MCAODC_03325 0.69 -0.4 671,495 - nrfB MCAODC_03325 0.69 -0.5 671,512 + nrfB MCAODC_03325 0.72 -0.3 671,513 - nrfB MCAODC_03325 0.72 -0.2 671,513 - nrfB MCAODC_03325 0.72 -1.0 671,543 - nrfB MCAODC_03325 0.77 +0.8 671,554 + nrfB MCAODC_03325 0.79 -0.7 671,593 + nrfB MCAODC_03325 0.86 +1.0 671,600 - nrfB MCAODC_03325 0.87 -1.3 671,648 + -0.3 671,649 - +1.3 671,652 - -0.2 671,660 + -1.3 671,660 + -1.4 671,660 + +1.2 671,661 - +0.8 671,661 - -0.3 671,661 - +0.5 671,663 + -0.1 671,664 - +0.3 671,671 + -1.4 671,671 + -0.3 671,672 - -0.9 671,740 - -0.7 671,979 + nrfA MCAODC_03330 0.18 -1.1 671,979 + nrfA MCAODC_03330 0.18 -1.1 671,979 + nrfA MCAODC_03330 0.18 -1.6 671,980 - nrfA MCAODC_03330 0.18 -0.9 671,980 - nrfA MCAODC_03330 0.18 -0.2 672,156 + nrfA MCAODC_03330 0.31 +2.3 672,228 + nrfA MCAODC_03330 0.36 -0.8 672,240 + nrfA MCAODC_03330 0.36 -0.4 672,249 + nrfA MCAODC_03330 0.37 +0.6 672,249 + nrfA MCAODC_03330 0.37 -0.7 672,260 + nrfA MCAODC_03330 0.38 -1.4 672,260 + nrfA MCAODC_03330 0.38 -2.5 672,294 + nrfA MCAODC_03330 0.40 -0.2 672,295 - nrfA MCAODC_03330 0.40 -0.5 672,295 - nrfA MCAODC_03330 0.40 -0.8 672,354 - nrfA MCAODC_03330 0.44 -0.2 672,354 - nrfA MCAODC_03330 0.44 +0.3 672,400 - nrfA MCAODC_03330 0.48 -2.0 672,428 + nrfA MCAODC_03330 0.50 -1.1 672,431 + nrfA MCAODC_03330 0.50 -0.1 672,431 + nrfA MCAODC_03330 0.50 +0.3 672,432 - nrfA MCAODC_03330 0.50 -0.0 672,441 + nrfA MCAODC_03330 0.50 -0.0 672,503 + nrfA MCAODC_03330 0.55 -1.1 672,504 - nrfA MCAODC_03330 0.55 -1.1 672,506 + nrfA MCAODC_03330 0.55 -2.3 672,506 + nrfA MCAODC_03330 0.55 -1.0 672,602 + nrfA MCAODC_03330 0.62 -0.4 672,602 + nrfA MCAODC_03330 0.62 -0.8 672,661 - nrfA MCAODC_03330 0.66 +0.5 672,679 + nrfA MCAODC_03330 0.67 -0.1 672,679 + nrfA MCAODC_03330 0.67 -0.1 672,680 - nrfA MCAODC_03330 0.67 -0.0 672,680 - nrfA MCAODC_03330 0.67 +1.9 672,680 - nrfA MCAODC_03330 0.67 -1.7 672,717 + nrfA MCAODC_03330 0.70 +1.5 672,729 - nrfA MCAODC_03330 0.70 +0.1 672,729 - nrfA MCAODC_03330 0.70 +2.0 672,729 - nrfA MCAODC_03330 0.70 -0.2 672,777 + nrfA MCAODC_03330 0.74 -1.1 672,778 - nrfA MCAODC_03330 0.74 -0.4 672,891 - nrfA MCAODC_03330 0.82 +0.3 672,891 - nrfA MCAODC_03330 0.82 +0.5 672,891 - nrfA MCAODC_03330 0.82 -0.7 672,995 + nrfA MCAODC_03330 0.89 +0.3 672,995 + nrfA MCAODC_03330 0.89 +0.5 672,995 + nrfA MCAODC_03330 0.89 +0.7 672,995 + nrfA MCAODC_03330 0.89 -0.7 672,995 + nrfA MCAODC_03330 0.89 +1.6 672,996 - nrfA MCAODC_03330 0.89 +0.6 672,996 - nrfA MCAODC_03330 0.89 +0.9 673,045 + +0.7 673,111 + -0.8 673,215 - +0.0 673,224 + -0.4 673,224 + -0.9 673,224 + -0.1 673,224 + -2.0 673,224 + +0.3 673,225 - -0.0 673,225 - +0.9 673,225 - -2.5 673,225 - -0.7 673,225 - -0.3 673,225 - -0.2 673,225 - +0.9 673,321 - -0.5 673,326 + -0.8 673,361 - -0.7 673,415 - -1.1 673,601 - -0.3 673,626 + +0.3 673,638 - -0.3 673,638 - -2.1 673,640 + -0.3 673,652 + +0.5 673,745 + acs MCAODC_03340 0.10 -0.3 673,745 + acs MCAODC_03340 0.10 -0.1 673,745 + acs MCAODC_03340 0.10 +0.1 673,746 - acs MCAODC_03340 0.10 +1.0 673,746 - acs MCAODC_03340 0.10 -1.6 673,746 - acs MCAODC_03340 0.10 -1.3 673,820 + acs MCAODC_03340 0.14 +1.5 673,865 + acs MCAODC_03340 0.16 +1.3 673,866 - acs MCAODC_03340 0.16 +0.9 673,866 - acs MCAODC_03340 0.16 -0.2 673,866 - acs MCAODC_03340 0.16 +0.3 673,872 + acs MCAODC_03340 0.17 +1.2 673,872 + acs MCAODC_03340 0.17 -0.3 673,873 - acs MCAODC_03340 0.17 -0.8 673,873 - acs MCAODC_03340 0.17 +0.8 673,874 + acs MCAODC_03340 0.17 +0.3 673,875 - acs MCAODC_03340 0.17 -2.1 673,910 + acs MCAODC_03340 0.19 +1.4 673,956 + acs MCAODC_03340 0.21 +1.3 673,956 + acs MCAODC_03340 0.21 -0.2 673,956 + acs MCAODC_03340 0.21 -1.3 673,956 + acs MCAODC_03340 0.21 -1.4 673,959 - acs MCAODC_03340 0.21 -2.2 674,127 - acs MCAODC_03340 0.30 +0.8 674,127 - acs MCAODC_03340 0.30 -1.8 674,130 - acs MCAODC_03340 0.30 -0.1
Or see this region's nucleotide sequence