Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ulaF and ulaE overlap by 1 nucleotides ulaE and ulaD are separated by 9 nucleotides ulaD and ulaC are separated by 13 nucleotides ulaC and ulaB are separated by 9 nucleotides ulaB and ulaA are separated by 15 nucleotides
MCAODC_02640: ulaF - L-ribulose-5-phosphate 4-epimerase UlaF, at 535,952 to 536,638
ulaF
MCAODC_02645: ulaE - L-ribulose-5-phosphate 3-epimerase UlaE, at 536,638 to 537,492
ulaE
MCAODC_02650: ulaD - 3-keto-L-gulonate-6-phosphate decarboxylase UlaD, at 537,502 to 538,152
ulaD
MCAODC_02655: ulaC - PTS ascorbate transporter subunit IIA, at 538,166 to 538,630
ulaC
MCAODC_02660: ulaB - PTS ascorbate transporter subunit IIB, at 538,640 to 538,945
ulaB
MCAODC_02665: ulaA - PTS ascorbate transporter subunit IIC, at 538,961 to 540,358
ulaA
Position (kb) 537
538
539 Strain fitness (log2 ratio) -2
-1
0
1
2 at 536.569 kb on + strand, within ulaF at 536.569 kb on + strand, within ulaF at 536.569 kb on + strand, within ulaF at 536.570 kb on - strand at 536.570 kb on - strand at 536.628 kb on - strand at 536.639 kb on + strand at 536.863 kb on + strand, within ulaE at 536.863 kb on + strand, within ulaE at 536.863 kb on + strand, within ulaE at 536.863 kb on + strand, within ulaE at 536.863 kb on + strand, within ulaE at 536.875 kb on - strand, within ulaE at 536.973 kb on - strand, within ulaE at 537.126 kb on - strand, within ulaE at 537.128 kb on + strand, within ulaE at 537.128 kb on + strand, within ulaE at 537.128 kb on + strand, within ulaE at 537.128 kb on + strand, within ulaE at 537.129 kb on - strand, within ulaE at 537.129 kb on - strand, within ulaE at 537.129 kb on - strand, within ulaE at 537.129 kb on - strand, within ulaE at 537.137 kb on + strand, within ulaE at 537.186 kb on + strand, within ulaE at 537.192 kb on + strand, within ulaE at 537.199 kb on - strand, within ulaE at 537.199 kb on - strand, within ulaE at 537.374 kb on - strand, within ulaE at 537.462 kb on - strand at 537.462 kb on - strand at 537.462 kb on - strand at 537.462 kb on - strand at 537.493 kb on - strand at 537.493 kb on - strand at 537.493 kb on - strand at 537.504 kb on - strand at 537.749 kb on + strand, within ulaD at 537.895 kb on + strand, within ulaD at 537.895 kb on + strand, within ulaD at 537.930 kb on + strand, within ulaD at 537.930 kb on + strand, within ulaD at 537.930 kb on + strand, within ulaD at 537.931 kb on - strand, within ulaD at 537.992 kb on + strand, within ulaD at 537.993 kb on - strand, within ulaD at 538.110 kb on + strand at 538.111 kb on - strand at 538.111 kb on - strand at 538.111 kb on - strand at 538.145 kb on - strand at 538.167 kb on + strand at 538.167 kb on + strand at 538.168 kb on - strand at 538.203 kb on - strand at 538.203 kb on - strand at 538.298 kb on - strand, within ulaC at 538.298 kb on - strand, within ulaC at 538.382 kb on + strand, within ulaC at 538.406 kb on - strand, within ulaC at 538.461 kb on + strand, within ulaC at 538.462 kb on - strand, within ulaC at 538.462 kb on - strand, within ulaC at 538.501 kb on - strand, within ulaC at 538.501 kb on - strand, within ulaC at 538.600 kb on + strand at 538.622 kb on + strand at 538.622 kb on + strand at 538.622 kb on + strand at 538.734 kb on + strand, within ulaB at 538.734 kb on + strand, within ulaB at 538.734 kb on + strand, within ulaB at 538.734 kb on + strand, within ulaB at 538.735 kb on - strand, within ulaB at 538.735 kb on - strand, within ulaB at 538.775 kb on - strand, within ulaB at 538.775 kb on - strand, within ulaB at 538.815 kb on + strand, within ulaB at 538.839 kb on - strand, within ulaB at 538.933 kb on + strand at 538.933 kb on + strand at 538.934 kb on - strand at 538.934 kb on - strand at 538.938 kb on - strand at 538.938 kb on - strand at 538.960 kb on - strand at 538.960 kb on - strand at 538.962 kb on + strand at 538.963 kb on - strand at 539.032 kb on + strand at 539.032 kb on + strand at 539.032 kb on + strand at 539.032 kb on + strand at 539.032 kb on + strand at 539.032 kb on + strand at 539.032 kb on + strand at 539.032 kb on + strand at 539.032 kb on + strand at 539.033 kb on - strand at 539.033 kb on - strand at 539.033 kb on - strand at 539.033 kb on - strand at 539.033 kb on - strand at 539.033 kb on - strand at 539.033 kb on - strand at 539.033 kb on - strand at 539.033 kb on - strand at 539.033 kb on - strand at 539.033 kb on - strand at 539.033 kb on - strand at 539.033 kb on - strand at 539.033 kb on - strand at 539.033 kb on - strand at 539.033 kb on - strand at 539.033 kb on - strand at 539.034 kb on + strand at 539.034 kb on + strand at 539.034 kb on + strand at 539.034 kb on + strand at 539.034 kb on + strand at 539.034 kb on + strand at 539.034 kb on + strand at 539.035 kb on - strand at 539.035 kb on - strand at 539.035 kb on - strand at 539.035 kb on - strand at 539.035 kb on - strand at 539.035 kb on - strand at 539.048 kb on + strand at 539.049 kb on - strand at 539.149 kb on + strand, within ulaA
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 536,569 + ulaF MCAODC_02640 0.90 +0.9 536,569 + ulaF MCAODC_02640 0.90 -0.9 536,569 + ulaF MCAODC_02640 0.90 -1.8 536,570 - +0.9 536,570 - -0.9 536,628 - -0.4 536,639 + -0.3 536,863 + ulaE MCAODC_02645 0.26 +0.2 536,863 + ulaE MCAODC_02645 0.26 -2.4 536,863 + ulaE MCAODC_02645 0.26 -0.1 536,863 + ulaE MCAODC_02645 0.26 +0.3 536,863 + ulaE MCAODC_02645 0.26 +1.5 536,875 - ulaE MCAODC_02645 0.28 -0.7 536,973 - ulaE MCAODC_02645 0.39 -0.6 537,126 - ulaE MCAODC_02645 0.57 +0.1 537,128 + ulaE MCAODC_02645 0.57 -0.2 537,128 + ulaE MCAODC_02645 0.57 +0.0 537,128 + ulaE MCAODC_02645 0.57 -0.8 537,128 + ulaE MCAODC_02645 0.57 -0.4 537,129 - ulaE MCAODC_02645 0.57 +0.1 537,129 - ulaE MCAODC_02645 0.57 -1.3 537,129 - ulaE MCAODC_02645 0.57 -0.8 537,129 - ulaE MCAODC_02645 0.57 +0.3 537,137 + ulaE MCAODC_02645 0.58 -1.6 537,186 + ulaE MCAODC_02645 0.64 -0.3 537,192 + ulaE MCAODC_02645 0.65 -0.5 537,199 - ulaE MCAODC_02645 0.66 -0.3 537,199 - ulaE MCAODC_02645 0.66 +0.9 537,374 - ulaE MCAODC_02645 0.86 -0.9 537,462 - -0.2 537,462 - -0.3 537,462 - +2.6 537,462 - +0.1 537,493 - +0.4 537,493 - +0.1 537,493 - +0.3 537,504 - +1.5 537,749 + ulaD MCAODC_02650 0.38 -0.2 537,895 + ulaD MCAODC_02650 0.60 -1.4 537,895 + ulaD MCAODC_02650 0.60 -0.7 537,930 + ulaD MCAODC_02650 0.66 -0.4 537,930 + ulaD MCAODC_02650 0.66 +0.8 537,930 + ulaD MCAODC_02650 0.66 -0.4 537,931 - ulaD MCAODC_02650 0.66 -0.1 537,992 + ulaD MCAODC_02650 0.75 -0.4 537,993 - ulaD MCAODC_02650 0.75 -0.2 538,110 + +0.6 538,111 - +0.9 538,111 - -0.2 538,111 - +0.1 538,145 - -0.7 538,167 + -0.5 538,167 + +0.6 538,168 - +0.1 538,203 - -0.6 538,203 - +0.5 538,298 - ulaC MCAODC_02655 0.28 +0.8 538,298 - ulaC MCAODC_02655 0.28 -1.2 538,382 + ulaC MCAODC_02655 0.46 -0.1 538,406 - ulaC MCAODC_02655 0.52 +0.3 538,461 + ulaC MCAODC_02655 0.63 +0.6 538,462 - ulaC MCAODC_02655 0.64 +0.4 538,462 - ulaC MCAODC_02655 0.64 +1.1 538,501 - ulaC MCAODC_02655 0.72 +0.5 538,501 - ulaC MCAODC_02655 0.72 -0.7 538,600 + +1.7 538,622 + -0.1 538,622 + -0.7 538,622 + +0.4 538,734 + ulaB MCAODC_02660 0.31 -0.2 538,734 + ulaB MCAODC_02660 0.31 -0.1 538,734 + ulaB MCAODC_02660 0.31 +0.4 538,734 + ulaB MCAODC_02660 0.31 -1.3 538,735 - ulaB MCAODC_02660 0.31 +1.1 538,735 - ulaB MCAODC_02660 0.31 +0.1 538,775 - ulaB MCAODC_02660 0.44 +0.0 538,775 - ulaB MCAODC_02660 0.44 +0.2 538,815 + ulaB MCAODC_02660 0.57 -0.4 538,839 - ulaB MCAODC_02660 0.65 -1.9 538,933 + +0.0 538,933 + +0.3 538,934 - -1.3 538,934 - -1.6 538,938 - -0.5 538,938 - -0.2 538,960 - -0.4 538,960 - -0.8 538,962 + +0.2 538,963 - -1.0 539,032 + +0.5 539,032 + +1.0 539,032 + -0.7 539,032 + +0.5 539,032 + +0.1 539,032 + -0.1 539,032 + -0.1 539,032 + -1.1 539,032 + -0.0 539,033 - +0.2 539,033 - -0.6 539,033 - -1.3 539,033 - +0.1 539,033 - +0.1 539,033 - -1.4 539,033 - -2.1 539,033 - +0.7 539,033 - -0.7 539,033 - +0.2 539,033 - +0.4 539,033 - -0.8 539,033 - +0.6 539,033 - +0.1 539,033 - -0.3 539,033 - +2.5 539,033 - -0.8 539,034 + -0.1 539,034 + -1.2 539,034 + -0.0 539,034 + -1.3 539,034 + -0.4 539,034 + +0.3 539,034 + -0.4 539,035 - -0.3 539,035 - -0.5 539,035 - -1.2 539,035 - +0.7 539,035 - +0.3 539,035 - +0.5 539,048 + -1.1 539,049 - +1.5 539,149 + ulaA MCAODC_02665 0.13 -0.4
Or see this region's nucleotide sequence