Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt fimC and fimA are separated by 36 nucleotides fimA and fimA are separated by 157 nucleotides fimA and fimE are separated by 464 nucleotides
MCAODC_02110: fimC - type 1 fimbria chaperone FimC, at 415,697 to 416,422
fimC
MCAODC_02115: fimA - Pilin (type 1 fimbrial protein), at 416,459 to 416,905
fimA
MCAODC_02120: fimA - Type-1 fimbrial protein, A chain precursor, at 417,063 to 417,611
fimA
MCAODC_02125: fimE - type 1 fimbria switch DNA invertase FimE, at 418,076 to 418,672
fimE
Position (kb) 417
418 Strain fitness (log2 ratio) -1
0
1
2
3 at 416.120 kb on + strand, within fimC at 416.187 kb on - strand, within fimC at 416.187 kb on - strand, within fimC at 416.223 kb on + strand, within fimC at 416.224 kb on - strand, within fimC at 416.304 kb on - strand, within fimC at 416.382 kb on - strand at 416.438 kb on - strand at 416.446 kb on - strand at 416.461 kb on - strand at 416.466 kb on + strand at 416.467 kb on - strand at 416.471 kb on + strand at 416.568 kb on + strand, within fimA at 416.569 kb on - strand, within fimA at 416.637 kb on - strand, within fimA at 416.749 kb on + strand, within fimA at 416.749 kb on + strand, within fimA at 416.749 kb on + strand, within fimA at 416.750 kb on - strand, within fimA at 416.750 kb on - strand, within fimA at 416.750 kb on - strand, within fimA at 416.750 kb on - strand, within fimA at 416.750 kb on - strand, within fimA at 416.789 kb on - strand, within fimA at 416.816 kb on - strand, within fimA at 416.851 kb on + strand, within fimA at 416.973 kb on - strand at 416.976 kb on - strand at 417.070 kb on + strand at 417.098 kb on + strand at 417.098 kb on + strand at 417.098 kb on + strand at 417.130 kb on + strand, within fimA at 417.131 kb on - strand, within fimA at 417.159 kb on - strand, within fimA at 417.159 kb on - strand, within fimA at 417.317 kb on + strand, within fimA at 417.317 kb on + strand, within fimA at 417.318 kb on - strand, within fimA at 417.341 kb on + strand, within fimA at 417.342 kb on - strand, within fimA at 417.381 kb on - strand, within fimA at 417.441 kb on + strand, within fimA at 417.441 kb on + strand, within fimA at 417.558 kb on - strand at 417.640 kb on - strand at 417.665 kb on - strand at 417.899 kb on + strand at 417.904 kb on - strand at 417.905 kb on + strand at 417.906 kb on - strand at 417.946 kb on + strand at 418.115 kb on - strand at 418.150 kb on + strand, within fimE at 418.160 kb on - strand, within fimE at 418.160 kb on - strand, within fimE at 418.161 kb on + strand, within fimE at 418.161 kb on + strand, within fimE at 418.162 kb on - strand, within fimE at 418.166 kb on + strand, within fimE at 418.167 kb on - strand, within fimE at 418.167 kb on - strand, within fimE at 418.172 kb on - strand, within fimE at 418.208 kb on + strand, within fimE at 418.208 kb on + strand, within fimE at 418.259 kb on + strand, within fimE at 418.260 kb on - strand, within fimE at 418.264 kb on + strand, within fimE at 418.265 kb on - strand, within fimE at 418.265 kb on - strand, within fimE at 418.265 kb on - strand, within fimE at 418.363 kb on + strand, within fimE at 418.364 kb on - strand, within fimE at 418.367 kb on + strand, within fimE at 418.367 kb on + strand, within fimE at 418.368 kb on - strand, within fimE at 418.409 kb on + strand, within fimE at 418.410 kb on - strand, within fimE at 418.546 kb on + strand, within fimE at 418.550 kb on - strand, within fimE at 418.579 kb on + strand, within fimE at 418.579 kb on + strand, within fimE at 418.588 kb on - strand, within fimE
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 416,120 + fimC MCAODC_02110 0.58 -0.7 416,187 - fimC MCAODC_02110 0.67 -0.1 416,187 - fimC MCAODC_02110 0.67 -0.3 416,223 + fimC MCAODC_02110 0.72 +0.3 416,224 - fimC MCAODC_02110 0.73 +0.3 416,304 - fimC MCAODC_02110 0.84 +2.9 416,382 - +0.1 416,438 - +2.3 416,446 - -0.0 416,461 - -1.3 416,466 + -0.7 416,467 - -0.6 416,471 + +0.3 416,568 + fimA MCAODC_02115 0.24 +0.9 416,569 - fimA MCAODC_02115 0.25 -1.4 416,637 - fimA MCAODC_02115 0.40 -1.1 416,749 + fimA MCAODC_02115 0.65 -0.9 416,749 + fimA MCAODC_02115 0.65 -0.1 416,749 + fimA MCAODC_02115 0.65 +1.9 416,750 - fimA MCAODC_02115 0.65 +0.9 416,750 - fimA MCAODC_02115 0.65 -0.4 416,750 - fimA MCAODC_02115 0.65 +0.7 416,750 - fimA MCAODC_02115 0.65 +1.9 416,750 - fimA MCAODC_02115 0.65 +0.5 416,789 - fimA MCAODC_02115 0.74 +0.5 416,816 - fimA MCAODC_02115 0.80 -0.2 416,851 + fimA MCAODC_02115 0.88 +1.1 416,973 - +0.7 416,976 - -0.4 417,070 + +0.5 417,098 + -1.2 417,098 + +0.6 417,098 + -0.2 417,130 + fimA MCAODC_02120 0.12 -0.4 417,131 - fimA MCAODC_02120 0.12 +0.9 417,159 - fimA MCAODC_02120 0.17 -0.3 417,159 - fimA MCAODC_02120 0.17 -1.2 417,317 + fimA MCAODC_02120 0.46 +0.7 417,317 + fimA MCAODC_02120 0.46 +0.2 417,318 - fimA MCAODC_02120 0.46 +3.5 417,341 + fimA MCAODC_02120 0.51 -0.6 417,342 - fimA MCAODC_02120 0.51 -0.4 417,381 - fimA MCAODC_02120 0.58 +0.0 417,441 + fimA MCAODC_02120 0.69 -0.5 417,441 + fimA MCAODC_02120 0.69 -0.5 417,558 - +0.7 417,640 - -0.2 417,665 - +1.7 417,899 + -1.0 417,904 - +0.6 417,905 + +1.4 417,906 - +1.4 417,946 + -0.9 418,115 - -0.8 418,150 + fimE MCAODC_02125 0.12 -1.0 418,160 - fimE MCAODC_02125 0.14 +1.9 418,160 - fimE MCAODC_02125 0.14 -0.9 418,161 + fimE MCAODC_02125 0.14 +0.8 418,161 + fimE MCAODC_02125 0.14 +0.9 418,162 - fimE MCAODC_02125 0.14 +0.1 418,166 + fimE MCAODC_02125 0.15 +0.8 418,167 - fimE MCAODC_02125 0.15 -1.1 418,167 - fimE MCAODC_02125 0.15 +3.5 418,172 - fimE MCAODC_02125 0.16 +1.0 418,208 + fimE MCAODC_02125 0.22 -0.9 418,208 + fimE MCAODC_02125 0.22 -1.1 418,259 + fimE MCAODC_02125 0.31 +0.9 418,260 - fimE MCAODC_02125 0.31 +0.2 418,264 + fimE MCAODC_02125 0.31 -0.3 418,265 - fimE MCAODC_02125 0.32 +0.1 418,265 - fimE MCAODC_02125 0.32 -0.0 418,265 - fimE MCAODC_02125 0.32 -0.7 418,363 + fimE MCAODC_02125 0.48 -0.1 418,364 - fimE MCAODC_02125 0.48 +1.0 418,367 + fimE MCAODC_02125 0.49 +0.3 418,367 + fimE MCAODC_02125 0.49 +0.9 418,368 - fimE MCAODC_02125 0.49 +1.7 418,409 + fimE MCAODC_02125 0.56 -0.4 418,410 - fimE MCAODC_02125 0.56 -0.2 418,546 + fimE MCAODC_02125 0.79 -0.4 418,550 - fimE MCAODC_02125 0.79 -0.6 418,579 + fimE MCAODC_02125 0.84 -1.2 418,579 + fimE MCAODC_02125 0.84 +0.6 418,588 - fimE MCAODC_02125 0.86 +0.9
Or see this region's nucleotide sequence