Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt deoA and deoC are separated by 126 nucleotides deoC and yjjI are separated by 257 nucleotides
MCAODC_01740: deoA - thymidine phosphorylase, at 338,248 to 339,570
deoA
MCAODC_01745: deoC - deoxyribose-phosphate aldolase, at 339,697 to 340,476
deoC
MCAODC_01750: yjjI - Glycine radical enzyme, YjjI family, at 340,734 to 342,002
yjjI
Position (kb) 339
340
341 Strain fitness (log2 ratio) -2
-1
0
1
2 at 338.718 kb on + strand, within deoA at 338.718 kb on + strand, within deoA at 338.718 kb on + strand, within deoA at 338.718 kb on + strand, within deoA at 338.718 kb on + strand, within deoA at 338.718 kb on + strand, within deoA at 338.719 kb on - strand, within deoA at 338.719 kb on - strand, within deoA at 338.719 kb on - strand, within deoA at 338.719 kb on - strand, within deoA at 338.931 kb on - strand, within deoA at 338.940 kb on + strand, within deoA at 339.054 kb on + strand, within deoA at 339.055 kb on - strand, within deoA at 339.132 kb on + strand, within deoA at 339.136 kb on - strand, within deoA at 339.213 kb on + strand, within deoA at 339.214 kb on - strand, within deoA at 339.214 kb on - strand, within deoA at 339.214 kb on - strand, within deoA at 339.246 kb on + strand, within deoA at 339.246 kb on + strand, within deoA at 339.246 kb on + strand, within deoA at 339.248 kb on + strand, within deoA at 339.420 kb on + strand, within deoA at 339.421 kb on - strand, within deoA at 339.472 kb on - strand at 339.573 kb on + strand at 339.574 kb on - strand at 339.593 kb on + strand at 339.594 kb on - strand at 339.628 kb on - strand at 339.642 kb on + strand at 339.643 kb on - strand at 339.646 kb on + strand at 339.646 kb on + strand at 339.656 kb on - strand at 339.685 kb on - strand at 339.685 kb on - strand at 339.694 kb on + strand at 339.694 kb on + strand at 339.694 kb on + strand at 339.694 kb on + strand at 339.694 kb on + strand at 339.694 kb on + strand at 339.695 kb on - strand at 339.695 kb on - strand at 339.695 kb on - strand at 339.698 kb on + strand at 339.698 kb on + strand at 339.698 kb on + strand at 339.699 kb on - strand at 339.699 kb on - strand at 339.701 kb on + strand at 339.702 kb on - strand at 339.702 kb on - strand at 339.718 kb on - strand at 339.780 kb on - strand, within deoC at 339.833 kb on + strand, within deoC at 339.834 kb on - strand, within deoC at 339.896 kb on - strand, within deoC at 339.904 kb on - strand, within deoC at 339.904 kb on - strand, within deoC at 340.076 kb on - strand, within deoC at 340.076 kb on - strand, within deoC at 340.102 kb on - strand, within deoC at 340.102 kb on - strand, within deoC at 340.332 kb on - strand, within deoC at 340.335 kb on + strand, within deoC at 340.335 kb on + strand, within deoC at 340.335 kb on + strand, within deoC at 340.335 kb on + strand, within deoC at 340.336 kb on - strand, within deoC at 340.336 kb on - strand, within deoC at 340.342 kb on - strand, within deoC at 340.342 kb on - strand, within deoC at 340.342 kb on - strand, within deoC at 340.532 kb on + strand at 340.540 kb on - strand at 340.559 kb on + strand at 340.559 kb on + strand at 340.560 kb on - strand at 340.560 kb on - strand at 340.561 kb on + strand at 340.561 kb on + strand at 340.561 kb on + strand at 340.561 kb on + strand at 340.562 kb on - strand at 340.562 kb on - strand at 340.562 kb on - strand at 340.562 kb on - strand at 340.562 kb on - strand at 340.562 kb on - strand at 340.582 kb on + strand at 340.583 kb on - strand at 340.583 kb on - strand at 340.587 kb on - strand at 340.602 kb on + strand at 340.602 kb on + strand at 340.602 kb on + strand at 340.603 kb on - strand at 340.603 kb on - strand at 340.603 kb on - strand at 340.603 kb on - strand at 340.603 kb on - strand at 340.603 kb on - strand at 340.604 kb on + strand at 340.605 kb on - strand at 340.624 kb on - strand at 340.695 kb on + strand at 340.695 kb on + strand at 340.696 kb on - strand at 340.696 kb on - strand at 340.719 kb on + strand at 340.799 kb on + strand at 340.800 kb on - strand at 340.900 kb on + strand, within yjjI at 340.901 kb on - strand, within yjjI at 340.901 kb on - strand, within yjjI at 340.901 kb on - strand, within yjjI at 340.901 kb on - strand, within yjjI at 340.910 kb on + strand, within yjjI at 340.944 kb on + strand, within yjjI at 340.944 kb on + strand, within yjjI at 341.049 kb on + strand, within yjjI at 341.049 kb on + strand, within yjjI at 341.059 kb on + strand, within yjjI at 341.060 kb on - strand, within yjjI at 341.086 kb on - strand, within yjjI at 341.086 kb on - strand, within yjjI at 341.086 kb on - strand, within yjjI at 341.443 kb on - strand, within yjjI
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 338,718 + deoA MCAODC_01740 0.36 -0.3 338,718 + deoA MCAODC_01740 0.36 +0.3 338,718 + deoA MCAODC_01740 0.36 +0.2 338,718 + deoA MCAODC_01740 0.36 -0.1 338,718 + deoA MCAODC_01740 0.36 +0.9 338,718 + deoA MCAODC_01740 0.36 +0.9 338,719 - deoA MCAODC_01740 0.36 +0.2 338,719 - deoA MCAODC_01740 0.36 -0.5 338,719 - deoA MCAODC_01740 0.36 +1.1 338,719 - deoA MCAODC_01740 0.36 -0.4 338,931 - deoA MCAODC_01740 0.52 -0.3 338,940 + deoA MCAODC_01740 0.52 +0.7 339,054 + deoA MCAODC_01740 0.61 -0.9 339,055 - deoA MCAODC_01740 0.61 -1.4 339,132 + deoA MCAODC_01740 0.67 +0.3 339,136 - deoA MCAODC_01740 0.67 +0.7 339,213 + deoA MCAODC_01740 0.73 -1.1 339,214 - deoA MCAODC_01740 0.73 -1.9 339,214 - deoA MCAODC_01740 0.73 +0.3 339,214 - deoA MCAODC_01740 0.73 -1.4 339,246 + deoA MCAODC_01740 0.75 -1.3 339,246 + deoA MCAODC_01740 0.75 -0.9 339,246 + deoA MCAODC_01740 0.75 +0.2 339,248 + deoA MCAODC_01740 0.76 +0.9 339,420 + deoA MCAODC_01740 0.89 -0.6 339,421 - deoA MCAODC_01740 0.89 -0.6 339,472 - +0.3 339,573 + -0.4 339,574 - +1.9 339,593 + -0.6 339,594 - -0.1 339,628 - -1.6 339,642 + -0.1 339,643 - -2.6 339,646 + -0.4 339,646 + -1.2 339,656 - -1.3 339,685 - +0.7 339,685 - -0.6 339,694 + -0.7 339,694 + -0.2 339,694 + +0.5 339,694 + -0.7 339,694 + +0.0 339,694 + -2.6 339,695 - -0.3 339,695 - +0.7 339,695 - -0.8 339,698 + -0.9 339,698 + +0.3 339,698 + -0.2 339,699 - +0.5 339,699 - -0.9 339,701 + +2.5 339,702 - +0.3 339,702 - -0.5 339,718 - -0.2 339,780 - deoC MCAODC_01745 0.11 +0.3 339,833 + deoC MCAODC_01745 0.17 -0.1 339,834 - deoC MCAODC_01745 0.18 -0.4 339,896 - deoC MCAODC_01745 0.26 +1.4 339,904 - deoC MCAODC_01745 0.27 -0.4 339,904 - deoC MCAODC_01745 0.27 +0.9 340,076 - deoC MCAODC_01745 0.49 -0.1 340,076 - deoC MCAODC_01745 0.49 +0.3 340,102 - deoC MCAODC_01745 0.52 +0.3 340,102 - deoC MCAODC_01745 0.52 +0.0 340,332 - deoC MCAODC_01745 0.81 -0.0 340,335 + deoC MCAODC_01745 0.82 +0.2 340,335 + deoC MCAODC_01745 0.82 +0.3 340,335 + deoC MCAODC_01745 0.82 +0.4 340,335 + deoC MCAODC_01745 0.82 +1.3 340,336 - deoC MCAODC_01745 0.82 +0.3 340,336 - deoC MCAODC_01745 0.82 -0.4 340,342 - deoC MCAODC_01745 0.83 +0.9 340,342 - deoC MCAODC_01745 0.83 +2.0 340,342 - deoC MCAODC_01745 0.83 +0.1 340,532 + -0.2 340,540 - -1.4 340,559 + +0.0 340,559 + -0.7 340,560 - -0.1 340,560 - +0.0 340,561 + -0.1 340,561 + +0.3 340,561 + +0.2 340,561 + +0.7 340,562 - -0.1 340,562 - -1.4 340,562 - -0.9 340,562 - +0.8 340,562 - -2.4 340,562 - +0.7 340,582 + +0.7 340,583 - +2.6 340,583 - +0.3 340,587 - +0.6 340,602 + +0.8 340,602 + -1.2 340,602 + -0.7 340,603 - -0.5 340,603 - +0.6 340,603 - +0.1 340,603 - -0.3 340,603 - -0.1 340,603 - +0.6 340,604 + -0.7 340,605 - -0.6 340,624 - -0.9 340,695 + +0.3 340,695 + -0.2 340,696 - +0.9 340,696 - -1.1 340,719 + -0.5 340,799 + -1.8 340,800 - -1.1 340,900 + yjjI MCAODC_01750 0.13 -1.4 340,901 - yjjI MCAODC_01750 0.13 +0.1 340,901 - yjjI MCAODC_01750 0.13 -0.1 340,901 - yjjI MCAODC_01750 0.13 -0.4 340,901 - yjjI MCAODC_01750 0.13 -0.1 340,910 + yjjI MCAODC_01750 0.14 +0.9 340,944 + yjjI MCAODC_01750 0.17 -1.0 340,944 + yjjI MCAODC_01750 0.17 -0.7 341,049 + yjjI MCAODC_01750 0.25 -0.7 341,049 + yjjI MCAODC_01750 0.25 +0.6 341,059 + yjjI MCAODC_01750 0.26 -1.0 341,060 - yjjI MCAODC_01750 0.26 -0.6 341,086 - yjjI MCAODC_01750 0.28 -0.4 341,086 - yjjI MCAODC_01750 0.28 -0.8 341,086 - yjjI MCAODC_01750 0.28 -0.1 341,443 - yjjI MCAODC_01750 0.56 -1.5
Or see this region's nucleotide sequence