Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt kefC and kefF overlap by 8 nucleotides kefF and yaaU are separated by 107 nucleotides yaaU and fixX are separated by 57 nucleotides fixX and fixX overlap by 4 nucleotides
MCAODC_01380: kefC - glutathione-regulated potassium-efflux system protein KefC, at 263,150 to 265,012
kefC
MCAODC_01385: kefF - glutathione-regulated potassium-efflux system oxidoreductase KefF, at 265,005 to 265,535
kefF
MCAODC_01390: yaaU - Putative metabolite transport protein YaaU, at 265,643 to 266,974
yaaU
MCAODC_01395: fixX - ferredoxin-like protein FixX, at 267,032 to 267,319
fixX
MCAODC_01400: fixX - ferredoxin-like protein FixX, at 267,316 to 268,602
fixX
Position (kb) 265
266
267 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 264.692 kb on + strand, within kefC at 264.693 kb on - strand, within kefC at 264.693 kb on - strand, within kefC at 264.693 kb on - strand, within kefC at 264.697 kb on + strand, within kefC at 264.697 kb on + strand, within kefC at 264.697 kb on + strand, within kefC at 264.698 kb on - strand, within kefC at 264.698 kb on - strand, within kefC at 264.698 kb on - strand, within kefC at 264.698 kb on - strand, within kefC at 264.806 kb on - strand, within kefC at 264.808 kb on + strand, within kefC at 264.809 kb on - strand, within kefC at 264.850 kb on + strand at 264.850 kb on + strand at 264.851 kb on - strand at 264.892 kb on + strand at 264.941 kb on + strand at 264.942 kb on - strand at 264.953 kb on + strand at 264.979 kb on - strand at 265.000 kb on + strand at 265.000 kb on + strand at 265.001 kb on - strand at 265.001 kb on - strand at 265.046 kb on + strand at 265.046 kb on + strand at 265.046 kb on + strand at 265.046 kb on + strand at 265.046 kb on + strand at 265.047 kb on - strand at 265.047 kb on - strand at 265.048 kb on + strand at 265.048 kb on + strand at 265.048 kb on + strand at 265.088 kb on + strand, within kefF at 265.089 kb on - strand, within kefF at 265.089 kb on - strand, within kefF at 265.089 kb on - strand, within kefF at 265.089 kb on - strand, within kefF at 265.274 kb on - strand, within kefF at 265.274 kb on - strand, within kefF at 265.313 kb on + strand, within kefF at 265.421 kb on - strand, within kefF at 265.421 kb on - strand, within kefF at 265.484 kb on + strand at 265.484 kb on + strand at 265.519 kb on + strand at 265.520 kb on - strand at 265.520 kb on - strand at 265.526 kb on + strand at 265.526 kb on + strand at 265.535 kb on + strand at 265.535 kb on + strand at 265.535 kb on + strand at 265.536 kb on - strand at 265.536 kb on - strand at 265.540 kb on - strand at 265.577 kb on + strand at 265.578 kb on - strand at 265.583 kb on + strand at 265.583 kb on + strand at 265.584 kb on - strand at 265.584 kb on - strand at 265.584 kb on - strand at 265.584 kb on - strand at 265.584 kb on - strand at 265.584 kb on - strand at 265.585 kb on + strand at 265.585 kb on + strand at 265.585 kb on + strand at 265.586 kb on - strand at 265.586 kb on - strand at 265.586 kb on - strand at 265.586 kb on - strand at 265.599 kb on - strand at 265.600 kb on + strand at 265.601 kb on - strand at 265.601 kb on - strand at 265.607 kb on + strand at 265.607 kb on + strand at 265.607 kb on + strand at 265.608 kb on - strand at 265.608 kb on - strand at 265.610 kb on + strand at 265.611 kb on - strand at 265.629 kb on + strand at 265.672 kb on + strand at 265.672 kb on + strand at 265.673 kb on - strand at 265.673 kb on - strand at 265.673 kb on - strand at 265.673 kb on - strand at 265.751 kb on - strand at 265.751 kb on - strand at 265.764 kb on - strand at 265.764 kb on - strand at 265.774 kb on + strand at 265.785 kb on + strand, within yaaU at 265.785 kb on + strand, within yaaU at 265.786 kb on - strand, within yaaU at 265.789 kb on + strand, within yaaU at 265.789 kb on + strand, within yaaU at 265.790 kb on - strand, within yaaU at 265.796 kb on - strand, within yaaU at 265.805 kb on + strand, within yaaU at 265.834 kb on + strand, within yaaU at 265.841 kb on + strand, within yaaU at 265.841 kb on + strand, within yaaU at 265.841 kb on + strand, within yaaU at 265.842 kb on - strand, within yaaU at 265.849 kb on + strand, within yaaU at 265.849 kb on + strand, within yaaU at 265.850 kb on - strand, within yaaU at 265.850 kb on - strand, within yaaU at 265.897 kb on + strand, within yaaU at 265.897 kb on + strand, within yaaU at 265.898 kb on - strand, within yaaU at 265.898 kb on - strand, within yaaU at 265.898 kb on - strand, within yaaU at 265.898 kb on - strand, within yaaU at 265.902 kb on + strand, within yaaU at 265.944 kb on + strand, within yaaU at 265.944 kb on + strand, within yaaU at 266.087 kb on - strand, within yaaU at 266.098 kb on + strand, within yaaU at 266.187 kb on + strand, within yaaU at 266.187 kb on + strand, within yaaU at 266.188 kb on - strand, within yaaU at 266.188 kb on - strand, within yaaU at 266.188 kb on - strand, within yaaU at 266.358 kb on - strand, within yaaU at 266.358 kb on - strand, within yaaU at 266.373 kb on - strand, within yaaU at 266.375 kb on + strand, within yaaU at 266.375 kb on + strand, within yaaU at 266.376 kb on - strand, within yaaU at 266.478 kb on + strand, within yaaU at 266.478 kb on + strand, within yaaU at 266.479 kb on - strand, within yaaU at 266.479 kb on - strand, within yaaU at 266.520 kb on + strand, within yaaU at 266.521 kb on - strand, within yaaU at 266.629 kb on + strand, within yaaU at 266.629 kb on + strand, within yaaU at 266.707 kb on + strand, within yaaU at 266.708 kb on - strand, within yaaU at 266.751 kb on + strand, within yaaU at 266.870 kb on + strand at 266.876 kb on + strand at 266.877 kb on - strand at 266.877 kb on - strand at 266.877 kb on - strand at 266.878 kb on + strand at 266.878 kb on + strand at 266.878 kb on + strand at 266.878 kb on + strand at 266.878 kb on + strand at 266.878 kb on + strand at 266.879 kb on - strand at 266.879 kb on - strand at 266.879 kb on - strand at 266.879 kb on - strand at 266.879 kb on - strand at 266.879 kb on - strand at 266.879 kb on - strand at 266.880 kb on + strand at 266.880 kb on + strand at 266.880 kb on + strand at 266.881 kb on - strand at 266.881 kb on - strand at 266.881 kb on - strand at 266.881 kb on - strand at 266.881 kb on - strand at 266.979 kb on + strand at 267.015 kb on + strand at 267.019 kb on + strand at 267.177 kb on + strand, within fixX at 267.177 kb on + strand, within fixX at 267.177 kb on + strand, within fixX at 267.178 kb on - strand, within fixX at 267.178 kb on - strand, within fixX at 267.178 kb on - strand, within fixX at 267.178 kb on - strand, within fixX at 267.178 kb on - strand, within fixX at 267.224 kb on - strand, within fixX at 267.277 kb on + strand, within fixX at 267.277 kb on + strand, within fixX at 267.277 kb on + strand, within fixX at 267.515 kb on + strand, within fixX at 267.519 kb on + strand, within fixX at 267.519 kb on + strand, within fixX at 267.519 kb on + strand, within fixX at 267.520 kb on - strand, within fixX at 267.520 kb on - strand, within fixX at 267.520 kb on - strand, within fixX at 267.520 kb on - strand, within fixX at 267.520 kb on - strand, within fixX at 267.520 kb on - strand, within fixX at 267.520 kb on - strand, within fixX at 267.520 kb on - strand, within fixX at 267.681 kb on + strand, within fixX at 267.681 kb on + strand, within fixX at 267.681 kb on + strand, within fixX at 267.681 kb on + strand, within fixX at 267.764 kb on - strand, within fixX at 267.776 kb on + strand, within fixX at 267.921 kb on + strand, within fixX at 267.921 kb on + strand, within fixX at 267.922 kb on - strand, within fixX at 267.923 kb on + strand, within fixX at 267.923 kb on + strand, within fixX at 267.924 kb on - strand, within fixX at 267.970 kb on + strand, within fixX at 267.970 kb on + strand, within fixX at 267.970 kb on + strand, within fixX
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 264,692 + kefC MCAODC_01380 0.83 +2.2 264,693 - kefC MCAODC_01380 0.83 +1.5 264,693 - kefC MCAODC_01380 0.83 -0.7 264,693 - kefC MCAODC_01380 0.83 +0.5 264,697 + kefC MCAODC_01380 0.83 -0.1 264,697 + kefC MCAODC_01380 0.83 -0.0 264,697 + kefC MCAODC_01380 0.83 +0.2 264,698 - kefC MCAODC_01380 0.83 -1.3 264,698 - kefC MCAODC_01380 0.83 +0.4 264,698 - kefC MCAODC_01380 0.83 +0.3 264,698 - kefC MCAODC_01380 0.83 -1.2 264,806 - kefC MCAODC_01380 0.89 -0.5 264,808 + kefC MCAODC_01380 0.89 -1.6 264,809 - kefC MCAODC_01380 0.89 -0.9 264,850 + -1.1 264,850 + -0.5 264,851 - -0.4 264,892 + +0.6 264,941 + -0.8 264,942 - -2.7 264,953 + +0.1 264,979 - -1.6 265,000 + -1.2 265,000 + +0.3 265,001 - -0.3 265,001 - -0.6 265,046 + -0.3 265,046 + -0.1 265,046 + -0.6 265,046 + -0.4 265,046 + +1.0 265,047 - -0.4 265,047 - -1.2 265,048 + +0.8 265,048 + -1.9 265,048 + -0.5 265,088 + kefF MCAODC_01385 0.16 -1.5 265,089 - kefF MCAODC_01385 0.16 -0.3 265,089 - kefF MCAODC_01385 0.16 +0.9 265,089 - kefF MCAODC_01385 0.16 -0.3 265,089 - kefF MCAODC_01385 0.16 -0.3 265,274 - kefF MCAODC_01385 0.51 -0.7 265,274 - kefF MCAODC_01385 0.51 +1.3 265,313 + kefF MCAODC_01385 0.58 -0.0 265,421 - kefF MCAODC_01385 0.78 -1.2 265,421 - kefF MCAODC_01385 0.78 -1.3 265,484 + -0.7 265,484 + -1.2 265,519 + -0.5 265,520 - -0.6 265,520 - -0.6 265,526 + -1.4 265,526 + -1.1 265,535 + +2.2 265,535 + +0.3 265,535 + +1.0 265,536 - +0.2 265,536 - -0.0 265,540 - +0.1 265,577 + -1.3 265,578 - -0.0 265,583 + -0.9 265,583 + +0.0 265,584 - -1.3 265,584 - +0.6 265,584 - +1.9 265,584 - +0.3 265,584 - -0.3 265,584 - -0.0 265,585 + -0.8 265,585 + +1.9 265,585 + -1.9 265,586 - +0.3 265,586 - -1.1 265,586 - +1.0 265,586 - -1.3 265,599 - -1.4 265,600 + -1.0 265,601 - -0.9 265,601 - -0.5 265,607 + +2.9 265,607 + -2.1 265,607 + -1.8 265,608 - -0.2 265,608 - +0.8 265,610 + -1.1 265,611 - +0.6 265,629 + -0.3 265,672 + -0.4 265,672 + +0.8 265,673 - -0.8 265,673 - +1.6 265,673 - +0.0 265,673 - +1.3 265,751 - -0.4 265,751 - -0.8 265,764 - +0.0 265,764 - +0.8 265,774 + -0.4 265,785 + yaaU MCAODC_01390 0.11 +0.1 265,785 + yaaU MCAODC_01390 0.11 -1.6 265,786 - yaaU MCAODC_01390 0.11 -0.8 265,789 + yaaU MCAODC_01390 0.11 -1.6 265,789 + yaaU MCAODC_01390 0.11 -0.6 265,790 - yaaU MCAODC_01390 0.11 -1.6 265,796 - yaaU MCAODC_01390 0.11 -0.1 265,805 + yaaU MCAODC_01390 0.12 -0.3 265,834 + yaaU MCAODC_01390 0.14 -0.1 265,841 + yaaU MCAODC_01390 0.15 +1.9 265,841 + yaaU MCAODC_01390 0.15 -0.4 265,841 + yaaU MCAODC_01390 0.15 -0.7 265,842 - yaaU MCAODC_01390 0.15 +0.1 265,849 + yaaU MCAODC_01390 0.15 -0.0 265,849 + yaaU MCAODC_01390 0.15 +0.0 265,850 - yaaU MCAODC_01390 0.16 -0.8 265,850 - yaaU MCAODC_01390 0.16 -0.3 265,897 + yaaU MCAODC_01390 0.19 +0.1 265,897 + yaaU MCAODC_01390 0.19 -0.0 265,898 - yaaU MCAODC_01390 0.19 -0.7 265,898 - yaaU MCAODC_01390 0.19 +0.5 265,898 - yaaU MCAODC_01390 0.19 +0.2 265,898 - yaaU MCAODC_01390 0.19 +0.6 265,902 + yaaU MCAODC_01390 0.19 +0.7 265,944 + yaaU MCAODC_01390 0.23 +0.2 265,944 + yaaU MCAODC_01390 0.23 +0.2 266,087 - yaaU MCAODC_01390 0.33 -1.4 266,098 + yaaU MCAODC_01390 0.34 -1.1 266,187 + yaaU MCAODC_01390 0.41 +0.9 266,187 + yaaU MCAODC_01390 0.41 -0.6 266,188 - yaaU MCAODC_01390 0.41 -0.9 266,188 - yaaU MCAODC_01390 0.41 +0.3 266,188 - yaaU MCAODC_01390 0.41 -1.1 266,358 - yaaU MCAODC_01390 0.54 +0.4 266,358 - yaaU MCAODC_01390 0.54 -0.3 266,373 - yaaU MCAODC_01390 0.55 -0.6 266,375 + yaaU MCAODC_01390 0.55 -0.5 266,375 + yaaU MCAODC_01390 0.55 +0.3 266,376 - yaaU MCAODC_01390 0.55 +2.5 266,478 + yaaU MCAODC_01390 0.63 -2.9 266,478 + yaaU MCAODC_01390 0.63 -0.2 266,479 - yaaU MCAODC_01390 0.63 -0.8 266,479 - yaaU MCAODC_01390 0.63 -0.8 266,520 + yaaU MCAODC_01390 0.66 +0.3 266,521 - yaaU MCAODC_01390 0.66 -0.2 266,629 + yaaU MCAODC_01390 0.74 -0.3 266,629 + yaaU MCAODC_01390 0.74 -0.9 266,707 + yaaU MCAODC_01390 0.80 +1.9 266,708 - yaaU MCAODC_01390 0.80 +1.0 266,751 + yaaU MCAODC_01390 0.83 -1.1 266,870 + +1.0 266,876 + +0.6 266,877 - +0.9 266,877 - -1.4 266,877 - -0.1 266,878 + -1.0 266,878 + -1.1 266,878 + -0.4 266,878 + -0.1 266,878 + +0.5 266,878 + +0.2 266,879 - +0.5 266,879 - -0.8 266,879 - -0.2 266,879 - -1.4 266,879 - +0.7 266,879 - +0.3 266,879 - -0.1 266,880 + +0.3 266,880 + +0.2 266,880 + -1.7 266,881 - -0.7 266,881 - -0.2 266,881 - -1.4 266,881 - +0.3 266,881 - -0.3 266,979 + -0.2 267,015 + -0.9 267,019 + +0.6 267,177 + fixX MCAODC_01395 0.50 +1.5 267,177 + fixX MCAODC_01395 0.50 -1.9 267,177 + fixX MCAODC_01395 0.50 -0.2 267,178 - fixX MCAODC_01395 0.51 +0.3 267,178 - fixX MCAODC_01395 0.51 -0.5 267,178 - fixX MCAODC_01395 0.51 -0.9 267,178 - fixX MCAODC_01395 0.51 -0.8 267,178 - fixX MCAODC_01395 0.51 +1.5 267,224 - fixX MCAODC_01395 0.67 +0.2 267,277 + fixX MCAODC_01395 0.85 +0.7 267,277 + fixX MCAODC_01395 0.85 +0.9 267,277 + fixX MCAODC_01395 0.85 +0.3 267,515 + fixX MCAODC_01400 0.15 +0.2 267,519 + fixX MCAODC_01400 0.16 -0.4 267,519 + fixX MCAODC_01400 0.16 +0.9 267,519 + fixX MCAODC_01400 0.16 +0.6 267,520 - fixX MCAODC_01400 0.16 +0.2 267,520 - fixX MCAODC_01400 0.16 +0.8 267,520 - fixX MCAODC_01400 0.16 -0.9 267,520 - fixX MCAODC_01400 0.16 -0.7 267,520 - fixX MCAODC_01400 0.16 -0.9 267,520 - fixX MCAODC_01400 0.16 -2.7 267,520 - fixX MCAODC_01400 0.16 +0.9 267,520 - fixX MCAODC_01400 0.16 +0.3 267,681 + fixX MCAODC_01400 0.28 +0.9 267,681 + fixX MCAODC_01400 0.28 +0.3 267,681 + fixX MCAODC_01400 0.28 -0.6 267,681 + fixX MCAODC_01400 0.28 +2.5 267,764 - fixX MCAODC_01400 0.35 -2.3 267,776 + fixX MCAODC_01400 0.36 +0.9 267,921 + fixX MCAODC_01400 0.47 +0.5 267,921 + fixX MCAODC_01400 0.47 -0.3 267,922 - fixX MCAODC_01400 0.47 -0.5 267,923 + fixX MCAODC_01400 0.47 -0.1 267,923 + fixX MCAODC_01400 0.47 +0.6 267,924 - fixX MCAODC_01400 0.47 -0.4 267,970 + fixX MCAODC_01400 0.51 -0.4 267,970 + fixX MCAODC_01400 0.51 -1.8 267,970 + fixX MCAODC_01400 0.51 +0.1
Or see this region's nucleotide sequence