Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt rluA and espY1 are separated by 417 nucleotides espY1 and djlA are separated by 294 nucleotides
MCAODC_01320: rluA - bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA, at 251,932 to 252,591
rluA
MCAODC_01325: espY1 - Type III secretion system effector EspY1, at 253,009 to 253,746
espY1
MCAODC_01330: djlA - co-chaperone DjlA, at 254,041 to 254,856
djlA
Position (kb) 253
254 Strain fitness (log2 ratio) -2
-1
0
1
2 at 252.147 kb on - strand, within rluA at 252.179 kb on + strand, within rluA at 252.179 kb on + strand, within rluA at 252.217 kb on + strand, within rluA at 252.217 kb on + strand, within rluA at 252.218 kb on - strand, within rluA at 252.218 kb on - strand, within rluA at 252.218 kb on - strand, within rluA at 252.218 kb on - strand, within rluA at 252.316 kb on + strand, within rluA at 252.361 kb on + strand, within rluA at 252.362 kb on - strand, within rluA at 252.362 kb on - strand, within rluA at 252.433 kb on - strand, within rluA at 252.433 kb on - strand, within rluA at 252.473 kb on - strand, within rluA at 252.515 kb on + strand, within rluA at 252.515 kb on + strand, within rluA at 252.515 kb on + strand, within rluA at 252.516 kb on - strand, within rluA at 252.516 kb on - strand, within rluA at 252.551 kb on - strand at 252.558 kb on + strand at 252.558 kb on + strand at 252.558 kb on + strand at 252.558 kb on + strand at 252.558 kb on + strand at 252.559 kb on - strand at 252.561 kb on + strand at 252.562 kb on - strand at 252.571 kb on - strand at 252.607 kb on + strand at 252.607 kb on + strand at 252.607 kb on + strand at 252.610 kb on - strand at 252.610 kb on - strand at 252.621 kb on - strand at 252.636 kb on + strand at 252.640 kb on + strand at 252.640 kb on + strand at 252.640 kb on + strand at 252.640 kb on + strand at 252.640 kb on + strand at 252.640 kb on + strand at 252.641 kb on - strand at 252.641 kb on - strand at 252.641 kb on - strand at 252.641 kb on - strand at 252.641 kb on - strand at 252.641 kb on - strand at 252.702 kb on + strand at 252.779 kb on + strand at 252.779 kb on + strand at 252.779 kb on + strand at 252.780 kb on - strand at 252.781 kb on + strand at 252.782 kb on - strand at 252.804 kb on - strand at 252.823 kb on - strand at 252.834 kb on - strand at 252.838 kb on - strand at 252.879 kb on + strand at 252.899 kb on + strand at 252.911 kb on + strand at 252.912 kb on - strand at 252.912 kb on - strand at 252.912 kb on - strand at 252.933 kb on + strand at 252.934 kb on - strand at 252.996 kb on - strand at 252.996 kb on - strand at 253.000 kb on + strand at 253.001 kb on - strand at 253.018 kb on - strand at 253.033 kb on - strand at 253.047 kb on + strand at 253.048 kb on - strand at 253.107 kb on + strand, within espY1 at 253.108 kb on - strand, within espY1 at 253.108 kb on - strand, within espY1 at 253.112 kb on - strand, within espY1 at 253.121 kb on + strand, within espY1 at 253.122 kb on - strand, within espY1 at 253.123 kb on + strand, within espY1 at 253.123 kb on + strand, within espY1 at 253.123 kb on + strand, within espY1 at 253.124 kb on - strand, within espY1 at 253.124 kb on - strand, within espY1 at 253.209 kb on + strand, within espY1 at 253.209 kb on + strand, within espY1 at 253.271 kb on + strand, within espY1 at 253.272 kb on - strand, within espY1 at 253.272 kb on - strand, within espY1 at 253.272 kb on - strand, within espY1 at 253.281 kb on + strand, within espY1 at 253.300 kb on - strand, within espY1 at 253.336 kb on + strand, within espY1 at 253.369 kb on + strand, within espY1 at 253.408 kb on - strand, within espY1 at 253.408 kb on - strand, within espY1 at 253.477 kb on - strand, within espY1 at 253.518 kb on + strand, within espY1 at 253.683 kb on + strand at 253.683 kb on + strand at 253.686 kb on - strand at 253.686 kb on - strand at 253.686 kb on - strand at 253.705 kb on - strand at 253.738 kb on + strand at 253.752 kb on + strand at 253.795 kb on - strand at 253.795 kb on - strand at 253.798 kb on + strand at 253.825 kb on + strand at 253.826 kb on - strand at 253.888 kb on - strand at 253.906 kb on - strand at 253.935 kb on + strand at 253.935 kb on + strand at 254.035 kb on - strand at 254.047 kb on - strand at 254.047 kb on - strand at 254.064 kb on + strand at 254.065 kb on - strand at 254.178 kb on + strand, within djlA at 254.179 kb on - strand, within djlA at 254.179 kb on - strand, within djlA at 254.179 kb on - strand, within djlA at 254.236 kb on - strand, within djlA at 254.236 kb on - strand, within djlA at 254.280 kb on + strand, within djlA at 254.281 kb on - strand, within djlA at 254.281 kb on - strand, within djlA at 254.374 kb on + strand, within djlA at 254.393 kb on + strand, within djlA at 254.394 kb on - strand, within djlA at 254.394 kb on - strand, within djlA at 254.394 kb on - strand, within djlA at 254.394 kb on - strand, within djlA at 254.474 kb on - strand, within djlA at 254.531 kb on + strand, within djlA at 254.532 kb on - strand, within djlA at 254.622 kb on + strand, within djlA at 254.628 kb on + strand, within djlA at 254.628 kb on + strand, within djlA at 254.629 kb on - strand, within djlA at 254.629 kb on - strand, within djlA at 254.740 kb on - strand, within djlA
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 252,147 - rluA MCAODC_01320 0.33 +0.1 252,179 + rluA MCAODC_01320 0.37 -0.4 252,179 + rluA MCAODC_01320 0.37 -0.4 252,217 + rluA MCAODC_01320 0.43 +1.8 252,217 + rluA MCAODC_01320 0.43 +0.3 252,218 - rluA MCAODC_01320 0.43 -0.1 252,218 - rluA MCAODC_01320 0.43 -1.0 252,218 - rluA MCAODC_01320 0.43 -1.9 252,218 - rluA MCAODC_01320 0.43 +1.7 252,316 + rluA MCAODC_01320 0.58 -0.4 252,361 + rluA MCAODC_01320 0.65 -0.4 252,362 - rluA MCAODC_01320 0.65 +1.5 252,362 - rluA MCAODC_01320 0.65 -1.0 252,433 - rluA MCAODC_01320 0.76 -0.5 252,433 - rluA MCAODC_01320 0.76 +0.0 252,473 - rluA MCAODC_01320 0.82 -0.0 252,515 + rluA MCAODC_01320 0.88 +1.2 252,515 + rluA MCAODC_01320 0.88 -0.9 252,515 + rluA MCAODC_01320 0.88 +1.6 252,516 - rluA MCAODC_01320 0.88 -0.4 252,516 - rluA MCAODC_01320 0.88 -0.1 252,551 - +0.0 252,558 + +1.0 252,558 + -0.6 252,558 + +0.4 252,558 + +1.3 252,558 + +1.4 252,559 - -0.4 252,561 + -1.3 252,562 - +0.5 252,571 - -0.3 252,607 + -0.6 252,607 + -0.0 252,607 + +0.3 252,610 - -0.3 252,610 - -1.9 252,621 - +0.9 252,636 + -0.4 252,640 + -1.0 252,640 + -0.7 252,640 + -0.2 252,640 + -0.3 252,640 + +0.6 252,640 + -0.2 252,641 - -0.1 252,641 - +0.2 252,641 - -0.5 252,641 - +0.9 252,641 - +0.7 252,641 - -0.2 252,702 + +0.1 252,779 + +0.5 252,779 + +0.1 252,779 + -2.1 252,780 - -0.1 252,781 + +0.6 252,782 - -0.1 252,804 - +0.3 252,823 - -0.6 252,834 - -0.4 252,838 - +1.3 252,879 + +0.1 252,899 + +1.9 252,911 + -0.2 252,912 - -0.6 252,912 - +0.5 252,912 - -0.4 252,933 + +0.4 252,934 - -0.3 252,996 - +0.4 252,996 - +0.1 253,000 + +1.3 253,001 - +0.0 253,018 - -0.0 253,033 - +0.2 253,047 + +0.2 253,048 - -0.4 253,107 + espY1 MCAODC_01325 0.13 -0.6 253,108 - espY1 MCAODC_01325 0.13 +0.9 253,108 - espY1 MCAODC_01325 0.13 -0.7 253,112 - espY1 MCAODC_01325 0.14 +1.2 253,121 + espY1 MCAODC_01325 0.15 +0.8 253,122 - espY1 MCAODC_01325 0.15 +0.1 253,123 + espY1 MCAODC_01325 0.15 -0.4 253,123 + espY1 MCAODC_01325 0.15 -0.7 253,123 + espY1 MCAODC_01325 0.15 +0.9 253,124 - espY1 MCAODC_01325 0.16 +0.6 253,124 - espY1 MCAODC_01325 0.16 +1.9 253,209 + espY1 MCAODC_01325 0.27 -0.7 253,209 + espY1 MCAODC_01325 0.27 +0.1 253,271 + espY1 MCAODC_01325 0.36 -1.1 253,272 - espY1 MCAODC_01325 0.36 -0.7 253,272 - espY1 MCAODC_01325 0.36 -0.7 253,272 - espY1 MCAODC_01325 0.36 +1.9 253,281 + espY1 MCAODC_01325 0.37 -0.1 253,300 - espY1 MCAODC_01325 0.39 -0.1 253,336 + espY1 MCAODC_01325 0.44 -0.7 253,369 + espY1 MCAODC_01325 0.49 -0.7 253,408 - espY1 MCAODC_01325 0.54 +0.3 253,408 - espY1 MCAODC_01325 0.54 -0.5 253,477 - espY1 MCAODC_01325 0.63 -2.2 253,518 + espY1 MCAODC_01325 0.69 +1.9 253,683 + -0.2 253,683 + +0.1 253,686 - -0.2 253,686 - +0.4 253,686 - -0.5 253,705 - -0.4 253,738 + +2.4 253,752 + -0.6 253,795 - +0.2 253,795 - -0.8 253,798 + -0.3 253,825 + -0.2 253,826 - -0.3 253,888 - +0.1 253,906 - +0.5 253,935 + +0.6 253,935 + -1.1 254,035 - +1.9 254,047 - +0.2 254,047 - -0.1 254,064 + +0.2 254,065 - -0.7 254,178 + djlA MCAODC_01330 0.17 -1.9 254,179 - djlA MCAODC_01330 0.17 -0.6 254,179 - djlA MCAODC_01330 0.17 -1.8 254,179 - djlA MCAODC_01330 0.17 -0.3 254,236 - djlA MCAODC_01330 0.24 +1.3 254,236 - djlA MCAODC_01330 0.24 +0.3 254,280 + djlA MCAODC_01330 0.29 +1.9 254,281 - djlA MCAODC_01330 0.29 +0.3 254,281 - djlA MCAODC_01330 0.29 +0.1 254,374 + djlA MCAODC_01330 0.41 +0.9 254,393 + djlA MCAODC_01330 0.43 -0.6 254,394 - djlA MCAODC_01330 0.43 -1.1 254,394 - djlA MCAODC_01330 0.43 +0.0 254,394 - djlA MCAODC_01330 0.43 -0.2 254,394 - djlA MCAODC_01330 0.43 +0.5 254,474 - djlA MCAODC_01330 0.53 +0.4 254,531 + djlA MCAODC_01330 0.60 +0.1 254,532 - djlA MCAODC_01330 0.60 -0.9 254,622 + djlA MCAODC_01330 0.71 +1.9 254,628 + djlA MCAODC_01330 0.72 -0.2 254,628 + djlA MCAODC_01330 0.72 +0.8 254,629 - djlA MCAODC_01330 0.72 -0.6 254,629 - djlA MCAODC_01330 0.72 +0.1 254,740 - djlA MCAODC_01330 0.86 +0.1
Or see this region's nucleotide sequence