Experiment: TP9
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt can and hpt are separated by 40 nucleotides hpt and gcd are separated by 205 nucleotides gcd and cueO are separated by 201 nucleotides
MCAODC_00955: can - carbonate dehydratase, at 170,168 to 170,830
can
MCAODC_00960: hpt - hypoxanthine phosphoribosyltransferase, at 170,871 to 171,407
hpt
MCAODC_00965: gcd - quinoprotein glucose dehydrogenase, at 171,613 to 174,003
gcd
MCAODC_00970: cueO - multicopper oxidase CueO, at 174,205 to 175,755
cueO
Position (kb) 171
172
173
174
175 Strain fitness (log2 ratio) -2
-1
0
1
2 at 170.829 kb on - strand at 170.872 kb on + strand at 170.873 kb on - strand at 170.873 kb on - strand at 170.902 kb on + strand at 170.902 kb on + strand at 171.029 kb on + strand, within hpt at 171.063 kb on + strand, within hpt at 171.064 kb on - strand, within hpt at 171.064 kb on - strand, within hpt at 171.089 kb on + strand, within hpt at 171.090 kb on - strand, within hpt at 171.090 kb on - strand, within hpt at 171.090 kb on - strand, within hpt at 171.107 kb on + strand, within hpt at 171.140 kb on + strand, within hpt at 171.199 kb on + strand, within hpt at 171.199 kb on + strand, within hpt at 171.215 kb on + strand, within hpt at 171.215 kb on + strand, within hpt at 171.234 kb on + strand, within hpt at 171.269 kb on + strand, within hpt at 171.269 kb on + strand, within hpt at 171.269 kb on + strand, within hpt at 171.270 kb on - strand, within hpt at 171.270 kb on - strand, within hpt at 171.270 kb on - strand, within hpt at 171.323 kb on - strand, within hpt at 171.323 kb on - strand, within hpt at 171.387 kb on + strand at 171.387 kb on + strand at 171.388 kb on - strand at 171.388 kb on - strand at 171.394 kb on - strand at 171.398 kb on + strand at 171.399 kb on - strand at 171.419 kb on + strand at 171.487 kb on + strand at 171.487 kb on + strand at 171.489 kb on + strand at 171.489 kb on + strand at 171.524 kb on + strand at 171.525 kb on - strand at 171.570 kb on + strand at 171.570 kb on + strand at 171.581 kb on - strand at 171.622 kb on - strand at 171.622 kb on - strand at 171.622 kb on - strand at 171.657 kb on - strand at 171.688 kb on + strand at 171.688 kb on + strand at 171.688 kb on + strand at 171.689 kb on - strand at 171.689 kb on - strand at 171.689 kb on - strand at 171.692 kb on + strand at 171.692 kb on + strand at 171.693 kb on - strand at 171.737 kb on - strand at 171.744 kb on + strand at 171.812 kb on + strand at 172.009 kb on - strand, within gcd at 172.011 kb on + strand, within gcd at 172.012 kb on - strand, within gcd at 172.061 kb on + strand, within gcd at 172.089 kb on + strand, within gcd at 172.090 kb on - strand, within gcd at 172.170 kb on + strand, within gcd at 172.189 kb on - strand, within gcd at 172.295 kb on - strand, within gcd at 172.295 kb on - strand, within gcd at 172.381 kb on - strand, within gcd at 172.401 kb on - strand, within gcd at 172.401 kb on - strand, within gcd at 172.420 kb on + strand, within gcd at 172.420 kb on + strand, within gcd at 172.420 kb on + strand, within gcd at 172.480 kb on - strand, within gcd at 172.585 kb on - strand, within gcd at 172.585 kb on - strand, within gcd at 172.609 kb on + strand, within gcd at 172.609 kb on + strand, within gcd at 172.610 kb on - strand, within gcd at 172.610 kb on - strand, within gcd at 172.800 kb on + strand, within gcd at 172.801 kb on - strand, within gcd at 172.837 kb on + strand, within gcd at 172.838 kb on - strand, within gcd at 172.838 kb on - strand, within gcd at 172.861 kb on + strand, within gcd at 172.861 kb on + strand, within gcd at 172.861 kb on + strand, within gcd at 172.862 kb on - strand, within gcd at 172.928 kb on - strand, within gcd at 172.981 kb on + strand, within gcd at 172.982 kb on - strand, within gcd at 173.073 kb on + strand, within gcd at 173.074 kb on - strand, within gcd at 173.074 kb on - strand, within gcd at 173.122 kb on - strand, within gcd at 173.185 kb on + strand, within gcd at 173.186 kb on - strand, within gcd at 173.186 kb on - strand, within gcd at 173.197 kb on - strand, within gcd at 173.253 kb on + strand, within gcd at 173.545 kb on + strand, within gcd at 173.545 kb on + strand, within gcd at 173.545 kb on + strand, within gcd at 173.546 kb on - strand, within gcd at 173.546 kb on - strand, within gcd at 173.558 kb on - strand, within gcd at 173.558 kb on - strand, within gcd at 173.604 kb on + strand, within gcd at 173.604 kb on + strand, within gcd at 173.604 kb on + strand, within gcd at 173.604 kb on + strand, within gcd at 173.604 kb on + strand, within gcd at 173.604 kb on + strand, within gcd at 173.604 kb on + strand, within gcd at 173.604 kb on + strand, within gcd at 173.605 kb on - strand, within gcd at 173.605 kb on - strand, within gcd at 173.605 kb on - strand, within gcd at 173.623 kb on + strand, within gcd at 173.623 kb on + strand, within gcd at 173.624 kb on - strand, within gcd at 173.624 kb on - strand, within gcd at 173.624 kb on - strand, within gcd at 173.625 kb on + strand, within gcd at 173.626 kb on - strand, within gcd at 173.626 kb on - strand, within gcd at 173.626 kb on - strand, within gcd at 173.649 kb on + strand, within gcd at 173.649 kb on + strand, within gcd at 173.650 kb on - strand, within gcd at 173.650 kb on - strand, within gcd at 173.650 kb on - strand, within gcd at 173.673 kb on + strand, within gcd at 173.674 kb on - strand, within gcd at 173.679 kb on + strand, within gcd at 173.694 kb on + strand, within gcd at 173.694 kb on + strand, within gcd at 173.694 kb on + strand, within gcd at 173.694 kb on + strand, within gcd at 173.694 kb on + strand, within gcd at 173.695 kb on - strand, within gcd at 173.695 kb on - strand, within gcd at 173.695 kb on - strand, within gcd at 173.736 kb on + strand, within gcd at 173.736 kb on + strand, within gcd at 173.794 kb on - strand at 173.802 kb on + strand at 173.802 kb on + strand at 173.803 kb on - strand at 173.803 kb on - strand at 173.803 kb on - strand at 173.806 kb on + strand at 173.806 kb on + strand at 173.806 kb on + strand at 173.806 kb on + strand at 173.807 kb on - strand at 173.807 kb on - strand at 173.807 kb on - strand at 173.807 kb on - strand at 173.818 kb on + strand at 173.818 kb on + strand at 173.819 kb on - strand at 173.819 kb on - strand at 173.890 kb on + strand at 173.891 kb on - strand at 173.891 kb on - strand at 173.891 kb on - strand at 173.891 kb on - strand at 173.891 kb on - strand at 173.891 kb on - strand at 173.891 kb on - strand at 173.904 kb on + strand at 173.904 kb on + strand at 173.911 kb on + strand at 173.911 kb on + strand at 173.911 kb on + strand at 173.912 kb on - strand at 173.912 kb on - strand at 173.912 kb on - strand at 173.912 kb on - strand at 173.912 kb on - strand at 173.965 kb on + strand at 173.965 kb on + strand at 173.965 kb on + strand at 173.965 kb on + strand at 173.965 kb on + strand at 173.965 kb on + strand at 173.965 kb on + strand at 173.965 kb on + strand at 173.966 kb on - strand at 173.966 kb on - strand at 173.966 kb on - strand at 173.966 kb on - strand at 173.966 kb on - strand at 173.966 kb on - strand at 173.966 kb on - strand at 173.967 kb on + strand at 173.967 kb on + strand at 173.967 kb on + strand at 173.968 kb on - strand at 173.977 kb on + strand at 173.977 kb on + strand at 174.001 kb on + strand at 174.001 kb on + strand at 174.001 kb on + strand at 174.001 kb on + strand at 174.002 kb on - strand at 174.185 kb on + strand at 174.207 kb on - strand at 174.213 kb on + strand at 174.213 kb on + strand at 174.267 kb on + strand at 174.267 kb on + strand at 174.267 kb on + strand at 174.268 kb on - strand at 174.268 kb on - strand at 174.269 kb on + strand at 174.269 kb on + strand at 174.269 kb on + strand at 174.269 kb on + strand at 174.269 kb on + strand at 174.269 kb on + strand at 174.269 kb on + strand at 174.269 kb on + strand at 174.269 kb on + strand at 174.269 kb on + strand at 174.269 kb on + strand at 174.269 kb on + strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.270 kb on - strand at 174.298 kb on - strand at 174.331 kb on + strand at 174.331 kb on + strand at 174.332 kb on - strand at 174.332 kb on - strand at 174.342 kb on + strand at 174.397 kb on - strand, within cueO at 174.456 kb on + strand, within cueO at 174.457 kb on - strand, within cueO at 174.470 kb on + strand, within cueO at 174.501 kb on + strand, within cueO at 174.501 kb on + strand, within cueO at 174.501 kb on + strand, within cueO at 174.501 kb on + strand, within cueO at 174.502 kb on - strand, within cueO at 174.532 kb on - strand, within cueO at 174.571 kb on - strand, within cueO at 174.579 kb on + strand, within cueO at 174.580 kb on - strand, within cueO at 174.644 kb on + strand, within cueO at 174.676 kb on - strand, within cueO at 174.693 kb on + strand, within cueO at 174.736 kb on + strand, within cueO at 174.737 kb on - strand, within cueO at 174.751 kb on - strand, within cueO at 174.751 kb on - strand, within cueO at 174.754 kb on + strand, within cueO at 174.754 kb on + strand, within cueO at 174.754 kb on + strand, within cueO at 174.755 kb on - strand, within cueO at 174.755 kb on - strand, within cueO at 174.755 kb on - strand, within cueO at 174.755 kb on - strand, within cueO at 174.755 kb on - strand, within cueO at 174.783 kb on + strand, within cueO at 174.783 kb on + strand, within cueO at 174.783 kb on + strand, within cueO at 174.784 kb on - strand, within cueO at 174.784 kb on - strand, within cueO at 174.786 kb on + strand, within cueO at 174.786 kb on + strand, within cueO at 174.787 kb on - strand, within cueO at 174.787 kb on - strand, within cueO at 174.992 kb on + strand, within cueO at 174.993 kb on - strand, within cueO
Per-strain Table
Position Strand Gene LocusTag Fraction TP9 remove 170,829 - -1.1 170,872 + +1.5 170,873 - +1.3 170,873 - -1.5 170,902 + -0.1 170,902 + +0.3 171,029 + hpt MCAODC_00960 0.29 -0.1 171,063 + hpt MCAODC_00960 0.36 +1.5 171,064 - hpt MCAODC_00960 0.36 +0.9 171,064 - hpt MCAODC_00960 0.36 +2.2 171,089 + hpt MCAODC_00960 0.41 -1.7 171,090 - hpt MCAODC_00960 0.41 +0.9 171,090 - hpt MCAODC_00960 0.41 +0.4 171,090 - hpt MCAODC_00960 0.41 +0.2 171,107 + hpt MCAODC_00960 0.44 -0.4 171,140 + hpt MCAODC_00960 0.50 -0.3 171,199 + hpt MCAODC_00960 0.61 -1.2 171,199 + hpt MCAODC_00960 0.61 +0.8 171,215 + hpt MCAODC_00960 0.64 +0.9 171,215 + hpt MCAODC_00960 0.64 -0.1 171,234 + hpt MCAODC_00960 0.68 +1.9 171,269 + hpt MCAODC_00960 0.74 +0.7 171,269 + hpt MCAODC_00960 0.74 -0.9 171,269 + hpt MCAODC_00960 0.74 +0.8 171,270 - hpt MCAODC_00960 0.74 +0.9 171,270 - hpt MCAODC_00960 0.74 +1.9 171,270 - hpt MCAODC_00960 0.74 -0.2 171,323 - hpt MCAODC_00960 0.84 +1.0 171,323 - hpt MCAODC_00960 0.84 +0.1 171,387 + +0.5 171,387 + +0.5 171,388 - +0.5 171,388 - -0.7 171,394 - -1.4 171,398 + -0.0 171,399 - +0.9 171,419 + +1.0 171,487 + +0.1 171,487 + -1.1 171,489 + +1.4 171,489 + +0.5 171,524 + -0.5 171,525 - +0.6 171,570 + -1.1 171,570 + -0.9 171,581 - +0.9 171,622 - -2.1 171,622 - +0.1 171,622 - -0.1 171,657 - +0.6 171,688 + +1.6 171,688 + +0.1 171,688 + +0.9 171,689 - +0.8 171,689 - -1.5 171,689 - -0.1 171,692 + -1.8 171,692 + -0.9 171,693 - -1.2 171,737 - -1.3 171,744 + +0.9 171,812 + -0.5 172,009 - gcd MCAODC_00965 0.17 +0.9 172,011 + gcd MCAODC_00965 0.17 -0.6 172,012 - gcd MCAODC_00965 0.17 -2.3 172,061 + gcd MCAODC_00965 0.19 -0.4 172,089 + gcd MCAODC_00965 0.20 -2.1 172,090 - gcd MCAODC_00965 0.20 -0.4 172,170 + gcd MCAODC_00965 0.23 +1.9 172,189 - gcd MCAODC_00965 0.24 +0.7 172,295 - gcd MCAODC_00965 0.29 -0.7 172,295 - gcd MCAODC_00965 0.29 -0.4 172,381 - gcd MCAODC_00965 0.32 -1.0 172,401 - gcd MCAODC_00965 0.33 +0.3 172,401 - gcd MCAODC_00965 0.33 +2.1 172,420 + gcd MCAODC_00965 0.34 +2.6 172,420 + gcd MCAODC_00965 0.34 -0.9 172,420 + gcd MCAODC_00965 0.34 -1.1 172,480 - gcd MCAODC_00965 0.36 -0.7 172,585 - gcd MCAODC_00965 0.41 +0.5 172,585 - gcd MCAODC_00965 0.41 +0.7 172,609 + gcd MCAODC_00965 0.42 -0.7 172,609 + gcd MCAODC_00965 0.42 +0.3 172,610 - gcd MCAODC_00965 0.42 -0.4 172,610 - gcd MCAODC_00965 0.42 -0.9 172,800 + gcd MCAODC_00965 0.50 +1.3 172,801 - gcd MCAODC_00965 0.50 +0.1 172,837 + gcd MCAODC_00965 0.51 -1.2 172,838 - gcd MCAODC_00965 0.51 -0.7 172,838 - gcd MCAODC_00965 0.51 +0.6 172,861 + gcd MCAODC_00965 0.52 -0.0 172,861 + gcd MCAODC_00965 0.52 -0.5 172,861 + gcd MCAODC_00965 0.52 +0.1 172,862 - gcd MCAODC_00965 0.52 -0.1 172,928 - gcd MCAODC_00965 0.55 -0.9 172,981 + gcd MCAODC_00965 0.57 -0.8 172,982 - gcd MCAODC_00965 0.57 -0.7 173,073 + gcd MCAODC_00965 0.61 +0.5 173,074 - gcd MCAODC_00965 0.61 -0.6 173,074 - gcd MCAODC_00965 0.61 -0.1 173,122 - gcd MCAODC_00965 0.63 -0.8 173,185 + gcd MCAODC_00965 0.66 +0.8 173,186 - gcd MCAODC_00965 0.66 -1.1 173,186 - gcd MCAODC_00965 0.66 +1.4 173,197 - gcd MCAODC_00965 0.66 +0.6 173,253 + gcd MCAODC_00965 0.69 -1.3 173,545 + gcd MCAODC_00965 0.81 -0.6 173,545 + gcd MCAODC_00965 0.81 +0.7 173,545 + gcd MCAODC_00965 0.81 -1.4 173,546 - gcd MCAODC_00965 0.81 -1.0 173,546 - gcd MCAODC_00965 0.81 +0.4 173,558 - gcd MCAODC_00965 0.81 +0.5 173,558 - gcd MCAODC_00965 0.81 +0.6 173,604 + gcd MCAODC_00965 0.83 -0.1 173,604 + gcd MCAODC_00965 0.83 -0.8 173,604 + gcd MCAODC_00965 0.83 -0.1 173,604 + gcd MCAODC_00965 0.83 +0.3 173,604 + gcd MCAODC_00965 0.83 +1.1 173,604 + gcd MCAODC_00965 0.83 -0.7 173,604 + gcd MCAODC_00965 0.83 -0.5 173,604 + gcd MCAODC_00965 0.83 +0.1 173,605 - gcd MCAODC_00965 0.83 +0.3 173,605 - gcd MCAODC_00965 0.83 -0.3 173,605 - gcd MCAODC_00965 0.83 +1.9 173,623 + gcd MCAODC_00965 0.84 +0.0 173,623 + gcd MCAODC_00965 0.84 -2.4 173,624 - gcd MCAODC_00965 0.84 -0.4 173,624 - gcd MCAODC_00965 0.84 +2.0 173,624 - gcd MCAODC_00965 0.84 +0.7 173,625 + gcd MCAODC_00965 0.84 +0.8 173,626 - gcd MCAODC_00965 0.84 +1.9 173,626 - gcd MCAODC_00965 0.84 -0.4 173,626 - gcd MCAODC_00965 0.84 +0.3 173,649 + gcd MCAODC_00965 0.85 +0.6 173,649 + gcd MCAODC_00965 0.85 -1.1 173,650 - gcd MCAODC_00965 0.85 -0.1 173,650 - gcd MCAODC_00965 0.85 -0.9 173,650 - gcd MCAODC_00965 0.85 -0.4 173,673 + gcd MCAODC_00965 0.86 -0.2 173,674 - gcd MCAODC_00965 0.86 -0.9 173,679 + gcd MCAODC_00965 0.86 -0.1 173,694 + gcd MCAODC_00965 0.87 +0.3 173,694 + gcd MCAODC_00965 0.87 -0.9 173,694 + gcd MCAODC_00965 0.87 -0.1 173,694 + gcd MCAODC_00965 0.87 +0.4 173,694 + gcd MCAODC_00965 0.87 +0.4 173,695 - gcd MCAODC_00965 0.87 +0.3 173,695 - gcd MCAODC_00965 0.87 -1.0 173,695 - gcd MCAODC_00965 0.87 -0.8 173,736 + gcd MCAODC_00965 0.89 -0.8 173,736 + gcd MCAODC_00965 0.89 +0.7 173,794 - -0.3 173,802 + +0.3 173,802 + -0.1 173,803 - +0.1 173,803 - +0.6 173,803 - -1.8 173,806 + -0.5 173,806 + +1.3 173,806 + -1.3 173,806 + -2.6 173,807 - -0.6 173,807 - -1.6 173,807 - +1.0 173,807 - +0.8 173,818 + -0.9 173,818 + -0.4 173,819 - +1.9 173,819 - -1.4 173,890 + -0.6 173,891 - -1.8 173,891 - -0.4 173,891 - -0.3 173,891 - +0.2 173,891 - -0.9 173,891 - +0.2 173,891 - -0.6 173,904 + -0.4 173,904 + -0.9 173,911 + -0.1 173,911 + -0.4 173,911 + +0.0 173,912 - +0.1 173,912 - +0.0 173,912 - -1.3 173,912 - +1.1 173,912 - +0.9 173,965 + +0.9 173,965 + -1.7 173,965 + -1.9 173,965 + +1.5 173,965 + +0.3 173,965 + -0.0 173,965 + -0.5 173,965 + -1.0 173,966 - +0.3 173,966 - -1.3 173,966 - +0.7 173,966 - +0.9 173,966 - -0.4 173,966 - +0.3 173,966 - +0.1 173,967 + -0.2 173,967 + +1.9 173,967 + +0.3 173,968 - -0.0 173,977 + -0.0 173,977 + +0.2 174,001 + +1.1 174,001 + -0.4 174,001 + +0.0 174,001 + -0.1 174,002 - +1.9 174,185 + -0.2 174,207 - -0.3 174,213 + -0.1 174,213 + -0.7 174,267 + -0.1 174,267 + -0.7 174,267 + -0.1 174,268 - +1.9 174,268 - -1.0 174,269 + -0.1 174,269 + -0.4 174,269 + +1.9 174,269 + -0.4 174,269 + +0.6 174,269 + -1.2 174,269 + +0.3 174,269 + +0.2 174,269 + -0.7 174,269 + -1.0 174,269 + +1.1 174,269 + -0.6 174,270 - +0.5 174,270 - +1.9 174,270 - -0.1 174,270 - -2.7 174,270 - -0.0 174,270 - +0.7 174,270 - +0.3 174,270 - -1.1 174,270 - -0.8 174,270 - +0.3 174,270 - +0.9 174,270 - +0.9 174,270 - +0.1 174,270 - -0.9 174,270 - -0.4 174,270 - +0.4 174,270 - -0.1 174,270 - +0.5 174,298 - -2.6 174,331 + +1.9 174,331 + +0.9 174,332 - -0.5 174,332 - -0.8 174,342 + +0.9 174,397 - cueO MCAODC_00970 0.12 -0.6 174,456 + cueO MCAODC_00970 0.16 +1.2 174,457 - cueO MCAODC_00970 0.16 -0.4 174,470 + cueO MCAODC_00970 0.17 -1.4 174,501 + cueO MCAODC_00970 0.19 -1.2 174,501 + cueO MCAODC_00970 0.19 +0.2 174,501 + cueO MCAODC_00970 0.19 -0.1 174,501 + cueO MCAODC_00970 0.19 +0.3 174,502 - cueO MCAODC_00970 0.19 +0.2 174,532 - cueO MCAODC_00970 0.21 +1.6 174,571 - cueO MCAODC_00970 0.24 -0.7 174,579 + cueO MCAODC_00970 0.24 -0.3 174,580 - cueO MCAODC_00970 0.24 +0.6 174,644 + cueO MCAODC_00970 0.28 -0.7 174,676 - cueO MCAODC_00970 0.30 +0.5 174,693 + cueO MCAODC_00970 0.31 +0.1 174,736 + cueO MCAODC_00970 0.34 -0.9 174,737 - cueO MCAODC_00970 0.34 +0.1 174,751 - cueO MCAODC_00970 0.35 -0.8 174,751 - cueO MCAODC_00970 0.35 -0.8 174,754 + cueO MCAODC_00970 0.35 -2.6 174,754 + cueO MCAODC_00970 0.35 +0.3 174,754 + cueO MCAODC_00970 0.35 -0.3 174,755 - cueO MCAODC_00970 0.35 -0.9 174,755 - cueO MCAODC_00970 0.35 -0.6 174,755 - cueO MCAODC_00970 0.35 -0.4 174,755 - cueO MCAODC_00970 0.35 +0.3 174,755 - cueO MCAODC_00970 0.35 +1.2 174,783 + cueO MCAODC_00970 0.37 -1.1 174,783 + cueO MCAODC_00970 0.37 -0.3 174,783 + cueO MCAODC_00970 0.37 +1.4 174,784 - cueO MCAODC_00970 0.37 +0.9 174,784 - cueO MCAODC_00970 0.37 -1.4 174,786 + cueO MCAODC_00970 0.37 -0.0 174,786 + cueO MCAODC_00970 0.37 +0.6 174,787 - cueO MCAODC_00970 0.38 +0.7 174,787 - cueO MCAODC_00970 0.38 +2.5 174,992 + cueO MCAODC_00970 0.51 -0.6 174,993 - cueO MCAODC_00970 0.51 -2.2
Or see this region's nucleotide sequence