Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF975

Experiment: Ying_Nucleobase14 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF974 and GFF975 overlap by 4 nucleotidesGFF975 and GFF976 are separated by 81 nucleotides GFF974 - Acyl-CoA dehydrogenase, long-chain specific, mitochondrial precursor (EC 1.3.99.13), at 710,568 to 711,737 GFF974 GFF975 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 711,734 to 712,900 GFF975 GFF976 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 712,982 to 714,148 GFF976 Position (kb) 711 712 713Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 710.761 kb on + strand, within GFF974at 710.845 kb on + strand, within GFF974at 710.846 kb on - strand, within GFF974at 710.960 kb on - strand, within GFF974at 710.960 kb on - strand, within GFF974at 711.035 kb on + strand, within GFF974at 711.035 kb on + strand, within GFF974at 711.273 kb on - strand, within GFF974at 711.273 kb on - strand, within GFF974at 711.388 kb on + strand, within GFF974at 711.388 kb on + strand, within GFF974at 711.388 kb on + strand, within GFF974at 711.388 kb on + strand, within GFF974at 711.388 kb on + strand, within GFF974at 711.389 kb on - strand, within GFF974at 711.389 kb on - strand, within GFF974at 711.391 kb on + strand, within GFF974at 711.391 kb on + strand, within GFF974at 711.391 kb on + strand, within GFF974at 711.535 kb on + strand, within GFF974at 711.586 kb on + strand, within GFF974at 711.587 kb on - strand, within GFF974at 711.777 kb on + strandat 711.840 kb on + strandat 711.841 kb on - strandat 711.856 kb on - strand, within GFF975at 711.856 kb on - strand, within GFF975at 711.989 kb on + strand, within GFF975at 711.989 kb on + strand, within GFF975at 711.989 kb on + strand, within GFF975at 711.989 kb on + strand, within GFF975at 711.990 kb on - strand, within GFF975at 711.990 kb on - strand, within GFF975at 712.117 kb on - strand, within GFF975at 712.117 kb on - strand, within GFF975at 712.191 kb on + strand, within GFF975at 712.284 kb on + strand, within GFF975at 712.285 kb on - strand, within GFF975at 712.285 kb on - strand, within GFF975at 712.386 kb on + strand, within GFF975at 712.386 kb on + strand, within GFF975at 712.387 kb on - strand, within GFF975at 712.412 kb on + strand, within GFF975at 712.412 kb on + strand, within GFF975at 712.412 kb on + strand, within GFF975at 712.412 kb on + strand, within GFF975at 712.412 kb on + strand, within GFF975at 712.413 kb on - strand, within GFF975at 712.413 kb on - strand, within GFF975at 712.413 kb on - strand, within GFF975at 712.413 kb on - strand, within GFF975at 712.413 kb on - strand, within GFF975at 712.426 kb on - strand, within GFF975at 712.426 kb on - strand, within GFF975at 712.426 kb on - strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.433 kb on + strand, within GFF975at 712.434 kb on - strand, within GFF975at 712.434 kb on - strand, within GFF975at 712.434 kb on - strand, within GFF975at 712.502 kb on + strand, within GFF975at 712.503 kb on - strand, within GFF975at 712.530 kb on - strand, within GFF975at 712.571 kb on + strand, within GFF975at 712.572 kb on - strand, within GFF975at 712.572 kb on - strand, within GFF975at 712.838 kb on + strandat 712.839 kb on - strandat 712.894 kb on + strandat 712.894 kb on + strandat 712.894 kb on + strandat 712.895 kb on - strandat 712.936 kb on - strandat 712.994 kb on - strandat 712.994 kb on - strandat 713.082 kb on + strandat 713.098 kb on - strandat 713.110 kb on - strand, within GFF976at 713.116 kb on - strand, within GFF976at 713.175 kb on + strand, within GFF976at 713.175 kb on + strand, within GFF976at 713.176 kb on - strand, within GFF976at 713.176 kb on - strand, within GFF976at 713.176 kb on - strand, within GFF976at 713.220 kb on + strand, within GFF976at 713.297 kb on - strand, within GFF976at 713.346 kb on + strand, within GFF976at 713.346 kb on + strand, within GFF976at 713.346 kb on + strand, within GFF976at 713.347 kb on - strand, within GFF976at 713.347 kb on - strand, within GFF976at 713.347 kb on - strand, within GFF976at 713.357 kb on + strand, within GFF976at 713.357 kb on + strand, within GFF976at 713.436 kb on + strand, within GFF976at 713.437 kb on - strand, within GFF976at 713.474 kb on + strand, within GFF976at 713.580 kb on + strand, within GFF976at 713.580 kb on + strand, within GFF976at 713.580 kb on + strand, within GFF976at 713.581 kb on - strand, within GFF976at 713.581 kb on - strand, within GFF976at 713.703 kb on + strand, within GFF976at 713.703 kb on + strand, within GFF976at 713.704 kb on - strand, within GFF976

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1
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710,761 + GFF974 0.16 +0.3
710,845 + GFF974 0.24 +1.0
710,846 - GFF974 0.24 -0.5
710,960 - GFF974 0.34 -0.7
710,960 - GFF974 0.34 +0.2
711,035 + GFF974 0.40 -1.9
711,035 + GFF974 0.40 -2.0
711,273 - GFF974 0.60 +0.1
711,273 - GFF974 0.60 -0.1
711,388 + GFF974 0.70 -1.1
711,388 + GFF974 0.70 -1.5
711,388 + GFF974 0.70 -0.0
711,388 + GFF974 0.70 -1.8
711,388 + GFF974 0.70 +0.2
711,389 - GFF974 0.70 -0.2
711,389 - GFF974 0.70 -1.8
711,391 + GFF974 0.70 +2.1
711,391 + GFF974 0.70 -0.8
711,391 + GFF974 0.70 -0.8
711,535 + GFF974 0.83 -3.8
711,586 + GFF974 0.87 -0.1
711,587 - GFF974 0.87 -0.5
711,777 + -0.0
711,840 + -0.6
711,841 - +1.0
711,856 - GFF975 0.10 +2.5
711,856 - GFF975 0.10 +0.3
711,989 + GFF975 0.22 -1.8
711,989 + GFF975 0.22 +0.4
711,989 + GFF975 0.22 +0.9
711,989 + GFF975 0.22 +2.2
711,990 - GFF975 0.22 -1.8
711,990 - GFF975 0.22 +1.4
712,117 - GFF975 0.33 -2.5
712,117 - GFF975 0.33 -0.8
712,191 + GFF975 0.39 +0.0
712,284 + GFF975 0.47 -0.3
712,285 - GFF975 0.47 +0.2
712,285 - GFF975 0.47 +0.6
712,386 + GFF975 0.56 -0.9
712,386 + GFF975 0.56 +0.4
712,387 - GFF975 0.56 +0.1
712,412 + GFF975 0.58 +2.1
712,412 + GFF975 0.58 -1.7
712,412 + GFF975 0.58 -0.3
712,412 + GFF975 0.58 -0.5
712,412 + GFF975 0.58 -1.6
712,413 - GFF975 0.58 +1.3
712,413 - GFF975 0.58 +0.7
712,413 - GFF975 0.58 +1.0
712,413 - GFF975 0.58 +1.2
712,413 - GFF975 0.58 +1.8
712,426 - GFF975 0.59 -1.9
712,426 - GFF975 0.59 +1.4
712,426 - GFF975 0.59 +0.6
712,433 + GFF975 0.60 -0.1
712,433 + GFF975 0.60 +1.1
712,433 + GFF975 0.60 +0.5
712,433 + GFF975 0.60 -0.1
712,433 + GFF975 0.60 +0.2
712,433 + GFF975 0.60 -1.4
712,433 + GFF975 0.60 -1.9
712,434 - GFF975 0.60 -0.2
712,434 - GFF975 0.60 +0.2
712,434 - GFF975 0.60 -0.8
712,502 + GFF975 0.66 +0.9
712,503 - GFF975 0.66 -0.0
712,530 - GFF975 0.68 +0.1
712,571 + GFF975 0.72 -0.3
712,572 - GFF975 0.72 -0.4
712,572 - GFF975 0.72 +0.2
712,838 + +0.1
712,839 - +0.0
712,894 + -0.0
712,894 + -0.0
712,894 + -0.9
712,895 - -0.6
712,936 - -0.2
712,994 - -0.2
712,994 - -0.9
713,082 + -1.3
713,098 - -1.0
713,110 - GFF976 0.11 -0.9
713,116 - GFF976 0.11 -0.6
713,175 + GFF976 0.17 -0.6
713,175 + GFF976 0.17 +0.4
713,176 - GFF976 0.17 +0.2
713,176 - GFF976 0.17 +0.5
713,176 - GFF976 0.17 -0.4
713,220 + GFF976 0.20 +0.1
713,297 - GFF976 0.27 -2.6
713,346 + GFF976 0.31 -1.2
713,346 + GFF976 0.31 +0.2
713,346 + GFF976 0.31 +0.0
713,347 - GFF976 0.31 +1.0
713,347 - GFF976 0.31 +1.0
713,347 - GFF976 0.31 -0.2
713,357 + GFF976 0.32 +0.0
713,357 + GFF976 0.32 -0.3
713,436 + GFF976 0.39 -1.4
713,437 - GFF976 0.39 +1.6
713,474 + GFF976 0.42 -0.4
713,580 + GFF976 0.51 +0.4
713,580 + GFF976 0.51 +0.1
713,580 + GFF976 0.51 +1.6
713,581 - GFF976 0.51 +0.2
713,581 - GFF976 0.51 +0.9
713,703 + GFF976 0.62 -0.3
713,703 + GFF976 0.62 -1.6
713,704 - GFF976 0.62 -0.1

Or see this region's nucleotide sequence