Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF930 and GFF931 are separated by 13 nucleotides GFF931 and GFF932 are separated by 33 nucleotides GFF932 and GFF933 are separated by 9 nucleotides GFF933 and GFF934 are separated by 31 nucleotides
GFF930 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 662,050 to 663,228
GFF930
GFF931 - Enoyl-CoA hydratase (EC 4.2.1.17), at 663,242 to 664,087
GFF931
GFF932 - Thiolase, at 664,121 to 665,368
GFF932
GFF933 - 3-oxoacyl-[acyl-carrier protein] reductase (EC 1.1.1.100), at 665,378 to 666,145
GFF933
GFF934 - Butyryl-CoA dehydrogenase (EC 1.3.99.2), at 666,177 to 667,337
GFF934
Position (kb) 664
665
666 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 663.782 kb on + strand, within GFF931 at 663.783 kb on - strand, within GFF931 at 663.907 kb on + strand, within GFF931 at 664.029 kb on + strand at 664.029 kb on + strand at 664.029 kb on + strand at 664.030 kb on - strand at 664.030 kb on - strand at 664.030 kb on - strand at 664.082 kb on + strand at 664.083 kb on - strand at 664.150 kb on - strand at 664.274 kb on + strand, within GFF932 at 664.428 kb on - strand, within GFF932 at 664.428 kb on - strand, within GFF932 at 664.620 kb on - strand, within GFF932 at 664.640 kb on + strand, within GFF932 at 664.640 kb on + strand, within GFF932 at 664.641 kb on - strand, within GFF932 at 664.751 kb on + strand, within GFF932 at 664.763 kb on + strand, within GFF932 at 664.764 kb on - strand, within GFF932 at 664.764 kb on - strand, within GFF932 at 664.764 kb on - strand, within GFF932 at 664.764 kb on - strand, within GFF932 at 664.764 kb on - strand, within GFF932 at 665.506 kb on - strand, within GFF933 at 665.506 kb on - strand, within GFF933 at 665.935 kb on - strand, within GFF933 at 665.988 kb on - strand, within GFF933 at 666.089 kb on + strand at 666.090 kb on - strand at 666.090 kb on - strand at 666.091 kb on + strand at 666.091 kb on + strand at 666.092 kb on - strand at 666.092 kb on - strand at 666.284 kb on - strand at 666.284 kb on - strand at 666.284 kb on - strand at 666.284 kb on - strand at 666.284 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 663,782 + GFF931 0.64 +0.6 663,783 - GFF931 0.64 -0.5 663,907 + GFF931 0.79 -0.2 664,029 + +0.3 664,029 + -0.5 664,029 + -1.4 664,030 - -2.3 664,030 - +0.2 664,030 - -1.4 664,082 + -0.1 664,083 - +0.4 664,150 - +0.1 664,274 + GFF932 0.12 +0.2 664,428 - GFF932 0.25 -0.0 664,428 - GFF932 0.25 -1.7 664,620 - GFF932 0.40 -1.2 664,640 + GFF932 0.42 +0.3 664,640 + GFF932 0.42 -1.7 664,641 - GFF932 0.42 +0.5 664,751 + GFF932 0.50 -1.8 664,763 + GFF932 0.51 -1.0 664,764 - GFF932 0.52 +0.5 664,764 - GFF932 0.52 +0.5 664,764 - GFF932 0.52 -0.4 664,764 - GFF932 0.52 +1.8 664,764 - GFF932 0.52 -3.8 665,506 - GFF933 0.17 -1.0 665,506 - GFF933 0.17 +1.7 665,935 - GFF933 0.73 -1.9 665,988 - GFF933 0.79 +1.2 666,089 + -1.4 666,090 - +0.7 666,090 - -1.6 666,091 + +0.3 666,091 + +0.2 666,092 - -0.8 666,092 - +1.3 666,284 - +0.3 666,284 - -0.0 666,284 - +0.8 666,284 - +0.2 666,284 - +0.4
Or see this region's nucleotide sequence