Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF873 and GFF874 are separated by 8 nucleotides GFF874 and GFF875 are separated by 51 nucleotides
GFF873 - Methylcrotonyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.4), at 595,649 to 597,610
GFF873
GFF874 - Methylcrotonyl-CoA carboxylase carboxyl transferase subunit (EC 6.4.1.4), at 597,619 to 599,238
GFF874
GFF875 - Enoyl-CoA hydratase [isoleucine degradation] (EC 4.2.1.17) / 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) / 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3), at 599,290 to 601,422
GFF875
Position (kb) 597
598
599
600 Strain fitness (log2 ratio) -2
-1
0
1 at 596.755 kb on - strand, within GFF873 at 596.805 kb on + strand, within GFF873 at 596.806 kb on - strand, within GFF873 at 596.806 kb on - strand, within GFF873 at 596.806 kb on - strand, within GFF873 at 597.429 kb on + strand at 597.430 kb on - strand at 597.430 kb on - strand at 597.513 kb on + strand at 597.514 kb on - strand at 597.514 kb on - strand at 597.971 kb on + strand, within GFF874 at 597.971 kb on + strand, within GFF874 at 598.122 kb on - strand, within GFF874 at 598.227 kb on - strand, within GFF874 at 598.499 kb on + strand, within GFF874 at 598.499 kb on + strand, within GFF874 at 598.499 kb on + strand, within GFF874 at 598.499 kb on + strand, within GFF874 at 598.637 kb on + strand, within GFF874 at 598.637 kb on + strand, within GFF874 at 598.638 kb on - strand, within GFF874 at 598.658 kb on + strand, within GFF874 at 599.291 kb on + strand at 599.291 kb on + strand at 599.291 kb on + strand at 599.292 kb on - strand at 599.654 kb on + strand, within GFF875 at 599.654 kb on + strand, within GFF875 at 599.738 kb on + strand, within GFF875 at 599.739 kb on - strand, within GFF875
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 596,755 - GFF873 0.56 -0.7 596,805 + GFF873 0.59 +0.4 596,806 - GFF873 0.59 -1.6 596,806 - GFF873 0.59 -0.9 596,806 - GFF873 0.59 -0.5 597,429 + -1.4 597,430 - -1.0 597,430 - -0.4 597,513 + -0.7 597,514 - -0.8 597,514 - -0.5 597,971 + GFF874 0.22 -1.7 597,971 + GFF874 0.22 +1.2 598,122 - GFF874 0.31 -0.3 598,227 - GFF874 0.38 -0.3 598,499 + GFF874 0.54 -0.1 598,499 + GFF874 0.54 -0.0 598,499 + GFF874 0.54 -2.1 598,499 + GFF874 0.54 +0.6 598,637 + GFF874 0.63 -1.0 598,637 + GFF874 0.63 +0.4 598,638 - GFF874 0.63 -0.9 598,658 + GFF874 0.64 -1.1 599,291 + +0.2 599,291 + -0.8 599,291 + +0.4 599,292 - -0.4 599,654 + GFF875 0.17 +0.3 599,654 + GFF875 0.17 -0.5 599,738 + GFF875 0.21 -0.2 599,739 - GFF875 0.21 -0.1
Or see this region's nucleotide sequence