Experiment: Ying_Nucleobase14 rep C; time point 1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1076 and GFF709 are separated by 39 nucleotides GFF709 and GFF710 are separated by 16 nucleotides GFF710 and GFF711 are separated by 82 nucleotides GFF711 and GFF712 are separated by 56 nucleotides
GFF1076 - tRNA-Leu-CAA, at 388,659 to 388,740
GFF1076
GFF709 - Cysteine synthase B (EC 2.5.1.47), at 388,780 to 389,682
GFF709
GFF710 - Nudix hydrolase family protein, at 389,699 to 390,259
GFF710
GFF711 - Rhodanese-like domain protein, at 390,342 to 390,569
GFF711
GFF712 - D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95), at 390,626 to 391,669
GFF712
Position (kb) 389
390
391 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 388.787 kb on - strand at 389.248 kb on + strand, within GFF709 at 389.458 kb on + strand, within GFF709 at 389.488 kb on + strand, within GFF709 at 389.488 kb on + strand, within GFF709 at 389.488 kb on + strand, within GFF709 at 389.488 kb on + strand, within GFF709 at 390.056 kb on + strand, within GFF710 at 390.056 kb on + strand, within GFF710 at 390.056 kb on + strand, within GFF710 at 390.056 kb on + strand, within GFF710 at 390.056 kb on + strand, within GFF710 at 390.057 kb on - strand, within GFF710 at 390.057 kb on - strand, within GFF710 at 390.057 kb on - strand, within GFF710 at 390.057 kb on - strand, within GFF710 at 390.107 kb on + strand, within GFF710 at 390.108 kb on - strand, within GFF710 at 390.108 kb on - strand, within GFF710 at 390.108 kb on - strand, within GFF710 at 390.306 kb on + strand at 390.307 kb on - strand at 390.307 kb on - strand at 390.307 kb on - strand at 390.307 kb on - strand at 390.328 kb on + strand at 390.329 kb on - strand at 390.701 kb on - strand at 390.701 kb on - strand at 390.701 kb on - strand at 390.746 kb on + strand, within GFF712 at 390.746 kb on + strand, within GFF712 at 390.746 kb on + strand, within GFF712 at 390.747 kb on - strand, within GFF712 at 390.747 kb on - strand, within GFF712 at 390.747 kb on - strand, within GFF712 at 390.747 kb on - strand, within GFF712 at 390.747 kb on - strand, within GFF712 at 390.747 kb on - strand, within GFF712 at 390.935 kb on + strand, within GFF712 at 390.936 kb on - strand, within GFF712 at 390.944 kb on + strand, within GFF712 at 390.944 kb on + strand, within GFF712 at 390.945 kb on - strand, within GFF712 at 390.963 kb on - strand, within GFF712 at 390.963 kb on - strand, within GFF712 at 391.232 kb on + strand, within GFF712 at 391.232 kb on + strand, within GFF712 at 391.232 kb on + strand, within GFF712 at 391.232 kb on + strand, within GFF712 at 391.232 kb on + strand, within GFF712 at 391.232 kb on + strand, within GFF712 at 391.233 kb on - strand, within GFF712 at 391.233 kb on - strand, within GFF712
Per-strain Table
Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1 remove 388,787 - -2.2 389,248 + GFF709 0.52 -0.8 389,458 + GFF709 0.75 -1.8 389,488 + GFF709 0.78 -1.1 389,488 + GFF709 0.78 -1.3 389,488 + GFF709 0.78 -0.2 389,488 + GFF709 0.78 -1.3 390,056 + GFF710 0.64 -0.3 390,056 + GFF710 0.64 +0.0 390,056 + GFF710 0.64 -0.2 390,056 + GFF710 0.64 -0.4 390,056 + GFF710 0.64 +0.9 390,057 - GFF710 0.64 -0.3 390,057 - GFF710 0.64 -0.4 390,057 - GFF710 0.64 +1.2 390,057 - GFF710 0.64 +0.4 390,107 + GFF710 0.73 -0.9 390,108 - GFF710 0.73 -0.1 390,108 - GFF710 0.73 -0.8 390,108 - GFF710 0.73 -1.1 390,306 + -0.5 390,307 - -0.0 390,307 - -3.0 390,307 - -1.4 390,307 - -0.1 390,328 + -0.3 390,329 - +0.3 390,701 - -0.6 390,701 - -2.2 390,701 - +0.0 390,746 + GFF712 0.11 +1.3 390,746 + GFF712 0.11 +2.5 390,746 + GFF712 0.11 +1.1 390,747 - GFF712 0.12 -0.4 390,747 - GFF712 0.12 -1.1 390,747 - GFF712 0.12 -1.0 390,747 - GFF712 0.12 +0.1 390,747 - GFF712 0.12 +0.9 390,747 - GFF712 0.12 -0.5 390,935 + GFF712 0.30 -1.5 390,936 - GFF712 0.30 -0.8 390,944 + GFF712 0.30 -1.1 390,944 + GFF712 0.30 +0.2 390,945 - GFF712 0.31 +0.1 390,963 - GFF712 0.32 +0.2 390,963 - GFF712 0.32 -0.2 391,232 + GFF712 0.58 -0.6 391,232 + GFF712 0.58 -1.4 391,232 + GFF712 0.58 -0.6 391,232 + GFF712 0.58 +1.7 391,232 + GFF712 0.58 -0.8 391,232 + GFF712 0.58 +0.5 391,233 - GFF712 0.58 +0.9 391,233 - GFF712 0.58 +0.1
Or see this region's nucleotide sequence