Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF663

Experiment: Ying_Nucleobase14 rep C; time point 1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF662 and GFF663 are separated by 81 nucleotidesGFF663 and GFF664 are separated by 52 nucleotidesGFF664 and GFF665 are separated by 9 nucleotides GFF662 - Ferric iron ABC transporter, ATP-binding protein, at 344,311 to 345,426 GFF662 GFF663 - Ferric iron ABC transporter, permease protein, at 345,508 to 347,115 GFF663 GFF664 - FIG00932412: hypothetical protein, at 347,168 to 347,611 GFF664 GFF665 - PhnB protein; putative DNA binding 3-demethylubiquinone-9 3-methyltransferase domain protein, at 347,621 to 348,052 GFF665 Position (kb) 345 346 347 348Strain fitness (log2 ratio) -3 -2 -1 0 1at 344.603 kb on + strand, within GFF662at 344.603 kb on + strand, within GFF662at 344.753 kb on + strand, within GFF662at 344.754 kb on - strand, within GFF662at 344.763 kb on - strand, within GFF662at 344.763 kb on - strand, within GFF662at 345.161 kb on + strand, within GFF662at 345.161 kb on + strand, within GFF662at 345.161 kb on + strand, within GFF662at 345.161 kb on + strand, within GFF662at 345.161 kb on + strand, within GFF662at 345.162 kb on - strand, within GFF662at 345.162 kb on - strand, within GFF662at 345.162 kb on - strand, within GFF662at 345.440 kb on + strandat 345.440 kb on + strandat 345.440 kb on + strandat 345.440 kb on + strandat 345.441 kb on - strandat 345.444 kb on + strandat 345.445 kb on - strandat 345.445 kb on - strandat 345.445 kb on - strandat 345.448 kb on + strandat 345.448 kb on + strandat 345.448 kb on + strandat 345.449 kb on - strandat 345.449 kb on - strandat 345.655 kb on + strandat 345.655 kb on + strandat 345.805 kb on + strand, within GFF663at 345.805 kb on + strand, within GFF663at 345.806 kb on - strand, within GFF663at 345.806 kb on - strand, within GFF663at 345.817 kb on + strand, within GFF663at 345.817 kb on + strand, within GFF663at 345.818 kb on - strand, within GFF663at 345.823 kb on + strand, within GFF663at 345.824 kb on - strand, within GFF663at 345.824 kb on - strand, within GFF663at 345.824 kb on - strand, within GFF663at 345.956 kb on + strand, within GFF663at 345.958 kb on + strand, within GFF663at 345.958 kb on + strand, within GFF663at 345.958 kb on + strand, within GFF663at 345.958 kb on + strand, within GFF663at 345.958 kb on + strand, within GFF663at 345.958 kb on + strand, within GFF663at 345.959 kb on - strand, within GFF663at 345.959 kb on - strand, within GFF663at 345.959 kb on - strand, within GFF663at 345.959 kb on - strand, within GFF663at 345.964 kb on + strand, within GFF663at 345.964 kb on + strand, within GFF663at 345.964 kb on + strand, within GFF663at 345.965 kb on - strand, within GFF663at 345.965 kb on - strand, within GFF663at 345.965 kb on - strand, within GFF663at 345.965 kb on - strand, within GFF663at 345.965 kb on - strand, within GFF663at 346.147 kb on + strand, within GFF663at 346.148 kb on - strand, within GFF663at 346.148 kb on - strand, within GFF663at 346.180 kb on + strand, within GFF663at 346.180 kb on + strand, within GFF663at 346.180 kb on + strand, within GFF663at 346.180 kb on + strand, within GFF663at 346.181 kb on - strand, within GFF663at 346.181 kb on - strand, within GFF663at 346.624 kb on + strand, within GFF663at 346.624 kb on + strand, within GFF663at 346.624 kb on + strand, within GFF663at 346.711 kb on + strand, within GFF663at 346.712 kb on - strand, within GFF663at 346.712 kb on - strand, within GFF663at 346.712 kb on - strand, within GFF663at 347.002 kb on + strandat 347.114 kb on - strandat 347.158 kb on + strandat 347.158 kb on + strandat 347.159 kb on - strandat 347.298 kb on - strand, within GFF664at 347.324 kb on + strand, within GFF664at 347.324 kb on + strand, within GFF664at 347.324 kb on + strand, within GFF664at 347.325 kb on - strand, within GFF664at 347.333 kb on + strand, within GFF664at 347.375 kb on + strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.376 kb on - strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.540 kb on + strand, within GFF664at 347.541 kb on - strand, within GFF664at 347.541 kb on - strand, within GFF664at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.883 kb on + strand, within GFF665at 347.884 kb on - strand, within GFF665at 347.946 kb on + strand, within GFF665at 347.946 kb on + strand, within GFF665at 347.947 kb on - strand, within GFF665at 347.947 kb on - strand, within GFF665at 347.988 kb on + strand, within GFF665at 347.989 kb on - strand, within GFF665at 348.021 kb on + strandat 348.021 kb on + strandat 348.021 kb on + strandat 348.021 kb on + strandat 348.022 kb on - strandat 348.030 kb on + strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strandat 348.031 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Ying_Nucleobase14 rep C; time point 1
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344,603 + GFF662 0.26 -0.1
344,603 + GFF662 0.26 -2.7
344,753 + GFF662 0.40 -0.7
344,754 - GFF662 0.40 +0.1
344,763 - GFF662 0.41 +0.1
344,763 - GFF662 0.41 -0.1
345,161 + GFF662 0.76 +0.7
345,161 + GFF662 0.76 +0.9
345,161 + GFF662 0.76 -0.6
345,161 + GFF662 0.76 +0.1
345,161 + GFF662 0.76 -0.9
345,162 - GFF662 0.76 -0.0
345,162 - GFF662 0.76 -0.7
345,162 - GFF662 0.76 +0.5
345,440 + +0.1
345,440 + +0.1
345,440 + -0.1
345,440 + -0.1
345,441 - -2.5
345,444 + +0.1
345,445 - -0.3
345,445 - -1.0
345,445 - -1.2
345,448 + -0.3
345,448 + -0.3
345,448 + -0.4
345,449 - -0.7
345,449 - -0.2
345,655 + -0.1
345,655 + -0.4
345,805 + GFF663 0.18 +0.7
345,805 + GFF663 0.18 +0.3
345,806 - GFF663 0.19 -0.2
345,806 - GFF663 0.19 -0.1
345,817 + GFF663 0.19 -0.3
345,817 + GFF663 0.19 -1.6
345,818 - GFF663 0.19 -2.3
345,823 + GFF663 0.20 -0.2
345,824 - GFF663 0.20 -2.6
345,824 - GFF663 0.20 -0.3
345,824 - GFF663 0.20 +0.7
345,956 + GFF663 0.28 -0.1
345,958 + GFF663 0.28 -3.3
345,958 + GFF663 0.28 -0.5
345,958 + GFF663 0.28 -1.0
345,958 + GFF663 0.28 -0.5
345,958 + GFF663 0.28 -3.3
345,958 + GFF663 0.28 -0.6
345,959 - GFF663 0.28 -2.8
345,959 - GFF663 0.28 -0.2
345,959 - GFF663 0.28 +1.0
345,959 - GFF663 0.28 -0.3
345,964 + GFF663 0.28 -0.2
345,964 + GFF663 0.28 +0.2
345,964 + GFF663 0.28 -0.6
345,965 - GFF663 0.28 -0.5
345,965 - GFF663 0.28 -0.1
345,965 - GFF663 0.28 -0.8
345,965 - GFF663 0.28 -0.3
345,965 - GFF663 0.28 -0.8
346,147 + GFF663 0.40 -0.0
346,148 - GFF663 0.40 -1.3
346,148 - GFF663 0.40 +0.6
346,180 + GFF663 0.42 -1.3
346,180 + GFF663 0.42 +0.3
346,180 + GFF663 0.42 -0.0
346,180 + GFF663 0.42 -0.7
346,181 - GFF663 0.42 +0.1
346,181 - GFF663 0.42 +0.1
346,624 + GFF663 0.69 +0.5
346,624 + GFF663 0.69 +1.0
346,624 + GFF663 0.69 -0.4
346,711 + GFF663 0.75 -1.3
346,712 - GFF663 0.75 -0.4
346,712 - GFF663 0.75 -0.6
346,712 - GFF663 0.75 -0.3
347,002 + -0.8
347,114 - -0.2
347,158 + +1.2
347,158 + -0.2
347,159 - +0.5
347,298 - GFF664 0.29 +0.3
347,324 + GFF664 0.35 -1.0
347,324 + GFF664 0.35 +0.1
347,324 + GFF664 0.35 +0.6
347,325 - GFF664 0.35 +0.1
347,333 + GFF664 0.37 +0.2
347,375 + GFF664 0.47 +0.1
347,376 - GFF664 0.47 +0.7
347,376 - GFF664 0.47 +0.2
347,376 - GFF664 0.47 -2.0
347,376 - GFF664 0.47 +0.6
347,376 - GFF664 0.47 -0.6
347,540 + GFF664 0.84 -0.5
347,540 + GFF664 0.84 +0.1
347,540 + GFF664 0.84 -0.0
347,540 + GFF664 0.84 +0.5
347,540 + GFF664 0.84 -0.4
347,540 + GFF664 0.84 +0.1
347,541 - GFF664 0.84 -0.0
347,541 - GFF664 0.84 +0.2
347,883 + GFF665 0.61 +0.4
347,883 + GFF665 0.61 -2.0
347,883 + GFF665 0.61 -2.7
347,883 + GFF665 0.61 -0.6
347,883 + GFF665 0.61 +0.5
347,883 + GFF665 0.61 -0.2
347,883 + GFF665 0.61 -2.8
347,884 - GFF665 0.61 +0.5
347,946 + GFF665 0.75 -0.2
347,946 + GFF665 0.75 +0.4
347,947 - GFF665 0.75 +0.3
347,947 - GFF665 0.75 +0.1
347,988 + GFF665 0.85 -0.1
347,989 - GFF665 0.85 -2.2
348,021 + -0.2
348,021 + +0.1
348,021 + -0.5
348,021 + -1.4
348,022 - +0.6
348,030 + -2.1
348,031 - -1.1
348,031 - -1.3
348,031 - -2.3
348,031 - -0.6

Or see this region's nucleotide sequence