Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5706

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
2,729,387	+		GFF5705	0.67	-0.8
2,729,387	+		GFF5705	0.67	-0.4
2,729,387	+		GFF5705	0.67	-1.9
2,729,387	+		GFF5705	0.67	+1.0
2,729,387	+		GFF5705	0.67	+0.3
2,729,387	+		GFF5705	0.67	+0.1
2,729,387	+		GFF5705	0.67	+0.4
2,729,388	-		GFF5705	0.68	-0.1
2,729,388	-		GFF5705	0.68	+0.1
2,729,388	-		GFF5705	0.68	+1.7
2,729,388	-		GFF5705	0.68	+0.5
2,729,388	-		GFF5705	0.68	-0.8
2,729,388	-		GFF5705	0.68	-0.5
2,729,388	-		GFF5705	0.68	-0.0
2,729,388	-		GFF5705	0.68	+0.2
2,729,388	-		GFF5705	0.68	+0.5
2,729,668	+				+0.7
2,729,668	+				+0.3
2,729,668	+				+0.4
2,729,668	+				+0.0
2,729,669	-				+0.3
2,729,669	-				-0.2
2,729,669	-				+0.4
2,729,669	-				+0.0
2,729,701	+				-1.4
2,729,701	+				-0.9
2,729,701	+				-1.8
2,729,701	+				-1.9
2,729,701	+				-0.2
2,729,701	+				-1.6
2,729,702	-				-0.7
2,729,702	-				+0.7
2,729,702	-				-1.0
2,729,702	-				-1.3
2,729,702	-				-0.2
2,729,702	-				-0.4
2,729,838	-				+1.7
2,730,665	-		GFF5706	0.89	+0.9
2,730,665	-		GFF5706	0.89	-1.1
2,730,859	-				+1.5
2,730,859	-				+2.1
2,731,008	+		GFF5707	0.24	+1.0
2,731,009	-		GFF5707	0.25	-0.3
2,731,009	-		GFF5707	0.25	+0.7
2,731,227	+		GFF5707	0.47	-0.0
2,731,228	-		GFF5707	0.47	-0.6
2,731,560	+		GFF5707	0.81	-0.0
2,731,683	+				+0.5
2,731,684	-				-0.9
2,731,684	-				+0.4