Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5569

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
2,579,142	-				-0.4
2,579,183	-				-0.1
2,579,462	+		GFF5568	0.53	+0.6
2,579,463	-		GFF5568	0.53	+0.8
2,579,910	+		GFF5569	0.17	-0.2
2,579,910	-		GFF5569	0.17	+0.5
2,579,911	-		GFF5569	0.17	-0.5
2,579,911	-		GFF5569	0.17	+0.5
2,579,911	-		GFF5569	0.17	+3.0
2,580,225	+		GFF5569	0.45	-0.8
2,580,225	+		GFF5569	0.45	+0.1
2,580,225	+		GFF5569	0.45	-0.2
2,580,225	+		GFF5569	0.45	-0.1
2,580,226	-		GFF5569	0.45	+1.9
2,580,226	-		GFF5569	0.45	+1.3
2,580,226	-		GFF5569	0.45	-0.0
2,580,226	-		GFF5569	0.45	+0.2
2,580,282	+		GFF5569	0.50	-0.0
2,580,282	+		GFF5569	0.50	+0.5
2,580,283	-		GFF5569	0.50	-0.9
2,580,432	+		GFF5569	0.63	+0.0
2,580,432	+		GFF5569	0.63	-0.3
2,580,432	+		GFF5569	0.63	+0.2
2,580,432	+		GFF5569	0.63	-1.4
2,580,432	+		GFF5569	0.63	-0.8
2,580,432	+		GFF5569	0.63	+0.1
2,580,433	-		GFF5569	0.63	-0.5
2,580,433	-		GFF5569	0.63	+1.1
2,580,433	-		GFF5569	0.63	+0.5
2,580,433	-		GFF5569	0.63	+0.3
2,580,433	-		GFF5569	0.63	-1.9
2,580,433	-		GFF5569	0.63	-1.0
2,581,102	+		GFF5570	0.37	-0.4
2,581,102	+		GFF5570	0.37	-0.3
2,581,103	-		GFF5570	0.37	-1.0
2,581,223	-		GFF5570	0.59	+0.1
2,581,240	+		GFF5570	0.62	-0.9
2,581,240	+		GFF5570	0.62	+1.4
2,581,241	-		GFF5570	0.62	+0.5
2,581,535	+		GFF5571	0.19	-0.6