Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5513

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
2,513,502	+		GFF5512	0.45	-0.7
2,513,502	+		GFF5512	0.45	-0.5
2,513,502	+		GFF5512	0.45	+1.0
2,513,503	-		GFF5512	0.45	+1.0
2,513,503	-		GFF5512	0.45	+0.0
2,513,503	-		GFF5512	0.45	-0.9
2,513,514	+		GFF5512	0.46	+0.6
2,513,515	-		GFF5512	0.46	+0.5
2,513,515	-		GFF5512	0.46	-1.3
2,513,515	-		GFF5512	0.46	+0.1
2,513,763	+		GFF5512	0.63	-0.4
2,513,868	+		GFF5512	0.71	+0.1
2,513,868	+		GFF5512	0.71	-1.8
2,514,309	+				+0.4
2,514,310	-				-1.5
2,514,693	+		GFF5513	0.58	-0.4
2,514,693	+		GFF5513	0.58	-1.3
2,514,693	+		GFF5513	0.58	-0.2
2,514,693	+		GFF5513	0.58	+0.5
2,514,694	-		GFF5513	0.58	-1.4
2,514,694	-		GFF5513	0.58	-1.3
2,514,930	+				-0.4
2,514,930	+				-2.5
2,514,931	-				-0.4
2,514,931	-				+0.3
2,514,931	-				-2.3
2,515,024	+				+0.7
2,515,025	-				-2.2
2,515,068	-				-0.1
2,515,114	+				+0.6
2,515,273	+				-0.3
2,515,324	+				-2.3
2,515,606	+		GFF5514	0.21	-0.8
2,515,606	+		GFF5514	0.21	+0.3
2,515,606	+		GFF5514	0.21	-0.3
2,515,606	+		GFF5514	0.21	+0.4
2,515,606	+		GFF5514	0.21	-0.3
2,515,607	-		GFF5514	0.21	-0.4
2,515,607	-		GFF5514	0.21	+0.6
2,515,607	-		GFF5514	0.21	-0.3
2,515,607	-		GFF5514	0.21	+0.8
2,515,607	-		GFF5514	0.21	-0.9
2,515,666	+		GFF5514	0.23	-0.2
2,515,666	+		GFF5514	0.23	-0.2
2,515,738	+		GFF5514	0.26	-0.0
2,515,738	+		GFF5514	0.26	-0.2
2,515,739	-		GFF5514	0.26	+0.3
2,515,741	+		GFF5514	0.26	-0.9
2,515,741	+		GFF5514	0.26	-1.1
2,515,741	+		GFF5514	0.26	-1.0
2,515,742	-		GFF5514	0.27	-0.1
2,515,742	-		GFF5514	0.27	+0.7
2,515,957	+		GFF5514	0.36	-0.2
2,515,958	-		GFF5514	0.36	+0.1