Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5364

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
2,366,428	-		GFF5363	0.21	+0.8
2,366,583	+		GFF5363	0.34	-0.1
2,366,584	-		GFF5363	0.34	-0.2
2,366,584	-		GFF5363	0.34	-1.2
2,366,779	-		GFF5363	0.51	+1.5
2,366,814	+		GFF5363	0.54	-0.4
2,366,851	-		GFF5363	0.57	+0.5
2,366,922	+		GFF5363	0.63	-0.6
2,366,922	+		GFF5363	0.63	+0.4
2,366,922	+		GFF5363	0.63	+0.7
2,366,923	-		GFF5363	0.63	-0.5
2,366,923	-		GFF5363	0.63	-1.0
2,366,961	+		GFF5363	0.66	-2.8
2,366,961	+		GFF5363	0.66	+0.5
2,367,429	+		GFF5364	0.18	+0.5
2,367,429	+		GFF5364	0.18	+1.5
2,367,430	-		GFF5364	0.19	-0.8
2,367,430	-		GFF5364	0.19	+1.7
2,367,624	+		GFF5364	0.67	-1.6
2,367,625	-		GFF5364	0.67	-3.3
2,367,681	+		GFF5364	0.81	+2.0
2,367,682	-		GFF5364	0.82	-1.3
2,367,682	-		GFF5364	0.82	-1.9
2,367,682	-		GFF5364	0.82	-1.3
2,367,682	-		GFF5364	0.82	-0.9
2,367,682	-		GFF5364	0.82	-2.2
2,367,682	-		GFF5364	0.82	-0.9
2,367,777	+		GFF5365	0.16	+0.1
2,367,777	+		GFF5365	0.16	-0.6
2,367,778	-		GFF5365	0.16	+0.0
2,367,863	+		GFF5365	0.60	-0.6
2,367,863	+		GFF5365	0.60	-0.2
2,367,864	-		GFF5365	0.61	-0.1
2,367,864	-		GFF5365	0.61	-0.1
2,367,864	-		GFF5365	0.61	-0.1
2,367,956	-				+0.1
2,368,024	+				+0.3
2,368,222	+		GFF5366	0.19	+0.1
2,368,222	+		GFF5366	0.19	-0.9
2,368,222	+		GFF5366	0.19	-0.6
2,368,222	+		GFF5366	0.19	-1.9
2,368,222	+		GFF5366	0.19	-1.4
2,368,223	-		GFF5366	0.19	-0.2
2,368,223	-		GFF5366	0.19	+0.0
2,368,223	-		GFF5366	0.19	+0.8
2,368,348	+		GFF5366	0.31	-0.2
2,368,349	-		GFF5366	0.31	-0.7
2,368,532	-		GFF5366	0.47	+0.6
2,368,534	+		GFF5366	0.48	+0.4
2,368,655	-		GFF5366	0.58	+0.2
2,368,744	+		GFF5366	0.67	+0.4
2,368,745	-		GFF5366	0.67	+0.4
2,368,745	-		GFF5366	0.67	+0.5