Strain Fitness in Hydrogenophaga sp. GW460-11-11-14-LB1 around GFF5253

Experiment: Ying_Nucleobase14 rep C; time point 1

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Ying_Nucleobase14 rep C; time point 1
2,268,040	+		GFF5252	0.22	+0.0
2,268,041	-		GFF5252	0.22	+1.0
2,268,041	-		GFF5252	0.22	-1.8
2,268,094	+		GFF5252	0.28	+0.6
2,268,094	+		GFF5252	0.28	-0.5
2,268,337	+		GFF5252	0.54	-1.8
2,268,337	+		GFF5252	0.54	+0.7
2,268,532	+		GFF5252	0.75	-0.4
2,268,533	-		GFF5252	0.75	+0.5
2,268,553	+		GFF5252	0.77	+0.4
2,268,656	-		GFF5252	0.88	+1.8
2,268,807	+				-1.1
2,268,808	-				-0.3
2,268,810	+				-0.2
2,268,824	-				-0.2
2,268,824	-				-1.0
2,268,829	+				+0.3
2,268,829	+				+0.2
2,268,830	-				+0.2
2,269,133	+		GFF5253	0.14	-0.6
2,269,134	+		GFF5253	0.14	-0.4
2,269,202	+		GFF5253	0.18	+0.5
2,269,202	+		GFF5253	0.18	-0.2
2,269,203	-		GFF5253	0.18	+0.3
2,269,203	-		GFF5253	0.18	-0.0
2,269,203	-		GFF5253	0.18	+2.0
2,269,203	-		GFF5253	0.18	-0.6
2,269,203	-		GFF5253	0.18	-0.0
2,269,307	+		GFF5253	0.25	-1.1
2,269,307	+		GFF5253	0.25	+0.3
2,269,308	-		GFF5253	0.25	+0.4
2,269,454	+		GFF5253	0.35	-0.2
2,269,455	-		GFF5253	0.35	+0.4
2,269,499	+		GFF5253	0.38	+0.4
2,269,533	-		GFF5253	0.40	+1.0
2,270,157	-		GFF5253	0.80	+0.7
2,270,384	+				-0.0
2,270,827	+		GFF5254	0.40	-1.2
2,270,828	-		GFF5254	0.40	-0.1
2,270,887	+		GFF5254	0.46	+0.4
2,270,887	+		GFF5254	0.46	+1.7
2,271,131	-		GFF5254	0.72	-0.4
2,271,389	+				+0.3
2,271,389	-				+0.3